Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02185 and HMPREF1078_RS19455 overlap by 4 nucleotides HMPREF1078_RS19455 and HMPREF1078_RS02190 are separated by 13 nucleotides HMPREF1078_RS02190 and HMPREF1078_RS02195 are separated by 34 nucleotides
HMPREF1078_RS02185: HMPREF1078_RS02185 - sodium:solute symporter family protein, at 543,006 to 544,562
_RS02185
HMPREF1078_RS19455: HMPREF1078_RS19455 - hypothetical protein, at 544,559 to 544,699
_RS19455
HMPREF1078_RS02190: HMPREF1078_RS02190 - hypothetical protein, at 544,713 to 545,138
_RS02190
HMPREF1078_RS02195: HMPREF1078_RS02195 - phenylacetate--CoA ligase, at 545,173 to 546,474
_RS02195
Position (kb) 544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 543.590 kb on + strand, within HMPREF1078_RS02185 at 543.665 kb on - strand, within HMPREF1078_RS02185 at 543.811 kb on - strand, within HMPREF1078_RS02185 at 544.016 kb on + strand, within HMPREF1078_RS02185 at 544.016 kb on + strand, within HMPREF1078_RS02185 at 544.017 kb on - strand, within HMPREF1078_RS02185 at 544.017 kb on - strand, within HMPREF1078_RS02185 at 544.019 kb on - strand, within HMPREF1078_RS02185 at 544.021 kb on - strand, within HMPREF1078_RS02185 at 544.021 kb on - strand, within HMPREF1078_RS02185 at 544.032 kb on - strand, within HMPREF1078_RS02185 at 544.035 kb on - strand, within HMPREF1078_RS02185 at 544.063 kb on - strand, within HMPREF1078_RS02185 at 544.099 kb on - strand, within HMPREF1078_RS02185 at 544.188 kb on - strand, within HMPREF1078_RS02185 at 544.191 kb on + strand, within HMPREF1078_RS02185 at 544.192 kb on - strand, within HMPREF1078_RS02185 at 544.192 kb on - strand, within HMPREF1078_RS02185 at 544.198 kb on - strand, within HMPREF1078_RS02185 at 544.211 kb on + strand, within HMPREF1078_RS02185 at 544.252 kb on + strand, within HMPREF1078_RS02185 at 544.269 kb on - strand, within HMPREF1078_RS02185 at 544.288 kb on - strand, within HMPREF1078_RS02185 at 544.313 kb on + strand, within HMPREF1078_RS02185 at 544.319 kb on + strand, within HMPREF1078_RS02185 at 544.320 kb on - strand, within HMPREF1078_RS02185 at 544.320 kb on - strand, within HMPREF1078_RS02185 at 544.401 kb on - strand, within HMPREF1078_RS02185 at 544.462 kb on + strand at 544.496 kb on + strand at 544.496 kb on + strand at 544.497 kb on - strand at 544.497 kb on - strand at 544.499 kb on - strand at 544.523 kb on + strand at 544.529 kb on + strand at 544.529 kb on + strand at 544.529 kb on + strand at 544.529 kb on + strand at 544.530 kb on - strand at 544.533 kb on + strand at 544.534 kb on - strand at 544.534 kb on - strand at 544.536 kb on + strand at 544.537 kb on - strand at 544.546 kb on - strand at 544.583 kb on - strand, within HMPREF1078_RS19455 at 544.585 kb on + strand, within HMPREF1078_RS19455 at 544.586 kb on - strand, within HMPREF1078_RS19455 at 544.586 kb on - strand, within HMPREF1078_RS19455 at 544.662 kb on + strand, within HMPREF1078_RS19455 at 544.702 kb on - strand at 544.702 kb on - strand at 544.702 kb on - strand at 544.742 kb on + strand at 544.742 kb on + strand at 544.742 kb on + strand at 544.837 kb on + strand, within HMPREF1078_RS02190 at 544.838 kb on - strand, within HMPREF1078_RS02190 at 544.838 kb on - strand, within HMPREF1078_RS02190 at 544.838 kb on - strand, within HMPREF1078_RS02190 at 544.841 kb on + strand, within HMPREF1078_RS02190 at 544.841 kb on + strand, within HMPREF1078_RS02190 at 544.843 kb on + strand, within HMPREF1078_RS02190 at 544.843 kb on + strand, within HMPREF1078_RS02190 at 544.844 kb on - strand, within HMPREF1078_RS02190 at 544.970 kb on + strand, within HMPREF1078_RS02190 at 544.971 kb on - strand, within HMPREF1078_RS02190 at 544.972 kb on + strand, within HMPREF1078_RS02190 at 544.972 kb on + strand, within HMPREF1078_RS02190 at 544.996 kb on - strand, within HMPREF1078_RS02190 at 544.998 kb on - strand, within HMPREF1078_RS02190 at 545.053 kb on - strand, within HMPREF1078_RS02190 at 545.053 kb on - strand, within HMPREF1078_RS02190 at 545.146 kb on - strand at 545.166 kb on + strand at 545.314 kb on + strand, within HMPREF1078_RS02195 at 545.315 kb on - strand, within HMPREF1078_RS02195 at 545.397 kb on + strand, within HMPREF1078_RS02195 at 545.406 kb on - strand, within HMPREF1078_RS02195 at 545.480 kb on - strand, within HMPREF1078_RS02195 at 545.497 kb on - strand, within HMPREF1078_RS02195 at 545.650 kb on + strand, within HMPREF1078_RS02195 at 545.690 kb on - strand, within HMPREF1078_RS02195 at 545.694 kb on + strand, within HMPREF1078_RS02195 at 545.695 kb on - strand, within HMPREF1078_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 543,590 + HMPREF1078_RS02185 0.38 +0.5 543,665 - HMPREF1078_RS02185 0.42 -0.6 543,811 - HMPREF1078_RS02185 0.52 +0.6 544,016 + HMPREF1078_RS02185 0.65 -1.5 544,016 + HMPREF1078_RS02185 0.65 +0.2 544,017 - HMPREF1078_RS02185 0.65 -1.0 544,017 - HMPREF1078_RS02185 0.65 -0.0 544,019 - HMPREF1078_RS02185 0.65 -0.2 544,021 - HMPREF1078_RS02185 0.65 +0.6 544,021 - HMPREF1078_RS02185 0.65 +1.5 544,032 - HMPREF1078_RS02185 0.66 -1.6 544,035 - HMPREF1078_RS02185 0.66 -1.2 544,063 - HMPREF1078_RS02185 0.68 +0.9 544,099 - HMPREF1078_RS02185 0.70 -0.6 544,188 - HMPREF1078_RS02185 0.76 -3.4 544,191 + HMPREF1078_RS02185 0.76 +0.7 544,192 - HMPREF1078_RS02185 0.76 +2.0 544,192 - HMPREF1078_RS02185 0.76 -0.4 544,198 - HMPREF1078_RS02185 0.77 +0.4 544,211 + HMPREF1078_RS02185 0.77 +0.6 544,252 + HMPREF1078_RS02185 0.80 -0.5 544,269 - HMPREF1078_RS02185 0.81 +1.0 544,288 - HMPREF1078_RS02185 0.82 -0.6 544,313 + HMPREF1078_RS02185 0.84 +2.1 544,319 + HMPREF1078_RS02185 0.84 -1.3 544,320 - HMPREF1078_RS02185 0.84 -0.6 544,320 - HMPREF1078_RS02185 0.84 -3.2 544,401 - HMPREF1078_RS02185 0.90 -0.6 544,462 + -0.9 544,496 + +2.3 544,496 + +0.2 544,497 - -0.4 544,497 - -0.6 544,499 - +1.1 544,523 + +1.4 544,529 + -0.1 544,529 + +0.0 544,529 + -0.5 544,529 + +0.3 544,530 - -0.9 544,533 + +0.1 544,534 - -0.1 544,534 - +0.1 544,536 + +1.7 544,537 - +1.3 544,546 - +0.4 544,583 - HMPREF1078_RS19455 0.17 -1.9 544,585 + HMPREF1078_RS19455 0.18 +1.0 544,586 - HMPREF1078_RS19455 0.19 -2.3 544,586 - HMPREF1078_RS19455 0.19 -1.1 544,662 + HMPREF1078_RS19455 0.73 -0.7 544,702 - +0.0 544,702 - -0.3 544,702 - -0.5 544,742 + -1.3 544,742 + +0.2 544,742 + -0.6 544,837 + HMPREF1078_RS02190 0.29 +0.9 544,838 - HMPREF1078_RS02190 0.29 -0.2 544,838 - HMPREF1078_RS02190 0.29 -1.2 544,838 - HMPREF1078_RS02190 0.29 -0.9 544,841 + HMPREF1078_RS02190 0.30 -0.6 544,841 + HMPREF1078_RS02190 0.30 +0.0 544,843 + HMPREF1078_RS02190 0.31 -0.3 544,843 + HMPREF1078_RS02190 0.31 -1.0 544,844 - HMPREF1078_RS02190 0.31 +0.9 544,970 + HMPREF1078_RS02190 0.60 -0.9 544,971 - HMPREF1078_RS02190 0.61 +0.4 544,972 + HMPREF1078_RS02190 0.61 +0.6 544,972 + HMPREF1078_RS02190 0.61 +0.2 544,996 - HMPREF1078_RS02190 0.66 -1.4 544,998 - HMPREF1078_RS02190 0.67 -0.6 545,053 - HMPREF1078_RS02190 0.80 +0.3 545,053 - HMPREF1078_RS02190 0.80 +1.0 545,146 - -1.5 545,166 + +0.4 545,314 + HMPREF1078_RS02195 0.11 +0.3 545,315 - HMPREF1078_RS02195 0.11 -0.8 545,397 + HMPREF1078_RS02195 0.17 -0.1 545,406 - HMPREF1078_RS02195 0.18 +1.0 545,480 - HMPREF1078_RS02195 0.24 -0.7 545,497 - HMPREF1078_RS02195 0.25 +0.3 545,650 + HMPREF1078_RS02195 0.37 -0.4 545,690 - HMPREF1078_RS02195 0.40 +0.0 545,694 + HMPREF1078_RS02195 0.40 +0.3 545,695 - HMPREF1078_RS02195 0.40 -0.1
Or see this region's nucleotide sequence