Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19870 and HMPREF1078_RS18690 overlap by 20 nucleotides HMPREF1078_RS18690 and HMPREF1078_RS08755 are separated by 136 nucleotides HMPREF1078_RS08755 and HMPREF1078_RS08760 are separated by 28 nucleotides HMPREF1078_RS08760 and HMPREF1078_RS08765 are separated by 28 nucleotides HMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotides HMPREF1078_RS19190 and HMPREF1078_RS19195 are separated by 30 nucleotides
HMPREF1078_RS19870: HMPREF1078_RS19870 - hypothetical protein, at 338,136 to 338,371
_RS19870
HMPREF1078_RS18690: HMPREF1078_RS18690 - site-specific integrase, at 338,352 to 338,555
_RS18690
HMPREF1078_RS08755: HMPREF1078_RS08755 - tRNA-Lys, at 338,692 to 338,764
_RS08755
HMPREF1078_RS08760: HMPREF1078_RS08760 - tRNA-Lys, at 338,793 to 338,865
_RS08760
HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966
_RS08765
HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861
_RS19190
HMPREF1078_RS19195: HMPREF1078_RS19195 - type I asparaginase, at 339,892 to 340,962
_RS19195
Position (kb) 339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.063 kb on + strand at 338.070 kb on - strand at 338.071 kb on + strand at 338.071 kb on + strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.079 kb on - strand at 338.080 kb on + strand at 338.087 kb on - strand at 338.140 kb on - strand at 338.152 kb on + strand at 338.153 kb on - strand at 338.187 kb on - strand, within HMPREF1078_RS19870 at 338.189 kb on - strand, within HMPREF1078_RS19870 at 338.227 kb on - strand, within HMPREF1078_RS19870 at 338.286 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.369 kb on - strand at 338.369 kb on - strand at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.416 kb on - strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.451 kb on + strand, within HMPREF1078_RS18690 at 338.488 kb on - strand, within HMPREF1078_RS18690 at 338.566 kb on + strand at 338.615 kb on + strand at 338.616 kb on - strand at 338.620 kb on - strand at 338.623 kb on + strand at 338.623 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.639 kb on - strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.646 kb on - strand at 338.673 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.686 kb on - strand at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.745 kb on - strand, within HMPREF1078_RS08755 at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.787 kb on - strand at 338.787 kb on - strand at 338.857 kb on + strand, within HMPREF1078_RS08760 at 338.868 kb on + strand at 338.958 kb on + strand, within HMPREF1078_RS08765 at 338.975 kb on + strand at 339.074 kb on - strand at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.166 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.217 kb on - strand, within HMPREF1078_RS19190 at 339.223 kb on + strand, within HMPREF1078_RS19190 at 339.224 kb on - strand, within HMPREF1078_RS19190 at 339.320 kb on + strand, within HMPREF1078_RS19190 at 339.361 kb on + strand, within HMPREF1078_RS19190 at 339.389 kb on + strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.393 kb on + strand, within HMPREF1078_RS19190 at 339.411 kb on + strand, within HMPREF1078_RS19190 at 339.436 kb on - strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.481 kb on - strand, within HMPREF1078_RS19190 at 339.483 kb on + strand, within HMPREF1078_RS19190 at 339.484 kb on - strand, within HMPREF1078_RS19190 at 339.508 kb on - strand, within HMPREF1078_RS19190 at 339.528 kb on + strand, within HMPREF1078_RS19190 at 339.637 kb on - strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.672 kb on + strand, within HMPREF1078_RS19190 at 339.757 kb on - strand, within HMPREF1078_RS19190 at 339.812 kb on + strand at 339.838 kb on + strand at 339.839 kb on - strand at 339.894 kb on - strand at 340.036 kb on + strand, within HMPREF1078_RS19195 at 340.037 kb on - strand, within HMPREF1078_RS19195 at 340.060 kb on - strand, within HMPREF1078_RS19195 at 340.060 kb on - strand, within HMPREF1078_RS19195 at 340.112 kb on - strand, within HMPREF1078_RS19195 at 340.117 kb on + strand, within HMPREF1078_RS19195 at 340.118 kb on - strand, within HMPREF1078_RS19195 at 340.173 kb on - strand, within HMPREF1078_RS19195 at 340.173 kb on - strand, within HMPREF1078_RS19195 at 340.343 kb on + strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.362 kb on - strand, within HMPREF1078_RS19195 at 340.362 kb on - strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.370 kb on + strand, within HMPREF1078_RS19195 at 340.371 kb on - strand, within HMPREF1078_RS19195 at 340.371 kb on - strand, within HMPREF1078_RS19195 at 340.375 kb on - strand, within HMPREF1078_RS19195 at 340.375 kb on - strand, within HMPREF1078_RS19195 at 340.446 kb on + strand, within HMPREF1078_RS19195 at 340.575 kb on + strand, within HMPREF1078_RS19195 at 340.615 kb on - strand, within HMPREF1078_RS19195 at 340.618 kb on + strand, within HMPREF1078_RS19195 at 340.619 kb on - strand, within HMPREF1078_RS19195 at 340.697 kb on + strand, within HMPREF1078_RS19195 at 340.726 kb on + strand, within HMPREF1078_RS19195 at 340.727 kb on - strand, within HMPREF1078_RS19195 at 340.802 kb on + strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.830 kb on + strand, within HMPREF1078_RS19195
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 338,063 + +0.9 338,070 - -2.5 338,071 + +0.9 338,071 + +0.1 338,072 - -0.3 338,072 - -1.1 338,072 - +0.4 338,072 - -0.6 338,076 + +1.0 338,076 + +0.3 338,076 + +0.3 338,076 + +0.7 338,076 + -0.2 338,077 - -0.2 338,077 - -0.1 338,077 - +0.8 338,077 - -0.7 338,078 + -1.4 338,078 + -1.3 338,078 + -0.8 338,079 - +0.3 338,080 + +0.7 338,087 - +0.2 338,140 - -0.1 338,152 + -0.0 338,153 - +0.3 338,187 - HMPREF1078_RS19870 0.22 -0.8 338,189 - HMPREF1078_RS19870 0.22 +0.5 338,227 - HMPREF1078_RS19870 0.39 -0.3 338,286 + HMPREF1078_RS19870 0.64 -1.6 338,292 + HMPREF1078_RS19870 0.66 +0.7 338,292 + HMPREF1078_RS19870 0.66 +0.2 338,292 + HMPREF1078_RS19870 0.66 +1.0 338,292 + HMPREF1078_RS19870 0.66 -0.1 338,292 + HMPREF1078_RS19870 0.66 -3.1 338,293 - HMPREF1078_RS19870 0.67 +0.1 338,293 - HMPREF1078_RS19870 0.67 +0.9 338,293 - HMPREF1078_RS19870 0.67 +0.3 338,368 + -0.2 338,368 + -0.1 338,368 + +0.2 338,368 + +1.2 338,369 - +1.7 338,369 - -0.3 338,379 + HMPREF1078_RS18690 0.13 -0.5 338,379 + HMPREF1078_RS18690 0.13 -1.5 338,379 + HMPREF1078_RS18690 0.13 -1.3 338,402 + HMPREF1078_RS18690 0.25 -1.4 338,402 + HMPREF1078_RS18690 0.25 +0.8 338,416 - HMPREF1078_RS18690 0.31 -1.7 338,429 + HMPREF1078_RS18690 0.38 +0.3 338,429 + HMPREF1078_RS18690 0.38 +0.1 338,429 + HMPREF1078_RS18690 0.38 -1.1 338,429 + HMPREF1078_RS18690 0.38 +0.4 338,429 + HMPREF1078_RS18690 0.38 -2.4 338,430 - HMPREF1078_RS18690 0.38 -3.1 338,430 - HMPREF1078_RS18690 0.38 -0.7 338,430 - HMPREF1078_RS18690 0.38 -1.4 338,430 - HMPREF1078_RS18690 0.38 -0.5 338,430 - HMPREF1078_RS18690 0.38 +0.8 338,430 - HMPREF1078_RS18690 0.38 +0.4 338,451 + HMPREF1078_RS18690 0.49 -0.1 338,488 - HMPREF1078_RS18690 0.67 -1.4 338,566 + -0.7 338,615 + -0.0 338,616 - -0.7 338,620 - +0.1 338,623 + +0.9 338,623 + -0.8 338,638 + +2.2 338,638 + -0.9 338,638 + +0.1 338,638 + -1.2 338,639 - -0.3 338,640 + +0.2 338,640 + -1.1 338,640 + -0.8 338,640 + +0.3 338,641 - -1.6 338,641 - -1.0 338,641 - +0.3 338,646 - -0.9 338,673 + +0.4 338,685 + -1.5 338,685 + -1.6 338,685 + +0.9 338,686 - +0.3 338,728 + HMPREF1078_RS08755 0.49 -1.4 338,728 + HMPREF1078_RS08755 0.49 -2.5 338,728 + HMPREF1078_RS08755 0.49 -0.4 338,729 - HMPREF1078_RS08755 0.51 +0.7 338,729 - HMPREF1078_RS08755 0.51 +0.4 338,729 - HMPREF1078_RS08755 0.51 +1.8 338,729 - HMPREF1078_RS08755 0.51 -1.8 338,729 - HMPREF1078_RS08755 0.51 +0.0 338,729 - HMPREF1078_RS08755 0.51 +0.1 338,745 - HMPREF1078_RS08755 0.73 +0.7 338,757 - -1.1 338,757 - +0.5 338,757 - -0.5 338,757 - +0.1 338,787 - -0.9 338,787 - -0.1 338,857 + HMPREF1078_RS08760 0.88 -0.1 338,868 + +0.7 338,958 + HMPREF1078_RS08765 0.88 +1.3 338,975 + -2.0 339,074 - -1.1 339,165 + HMPREF1078_RS19190 0.13 +0.4 339,165 + HMPREF1078_RS19190 0.13 -1.0 339,166 - HMPREF1078_RS19190 0.13 -1.8 339,168 - HMPREF1078_RS19190 0.14 -0.1 339,168 - HMPREF1078_RS19190 0.14 -1.5 339,168 - HMPREF1078_RS19190 0.14 +1.1 339,168 - HMPREF1078_RS19190 0.14 -0.7 339,186 + HMPREF1078_RS19190 0.16 +0.1 339,186 + HMPREF1078_RS19190 0.16 -1.6 339,217 - HMPREF1078_RS19190 0.20 -1.2 339,223 + HMPREF1078_RS19190 0.21 +1.1 339,224 - HMPREF1078_RS19190 0.21 -0.7 339,320 + HMPREF1078_RS19190 0.33 -1.3 339,361 + HMPREF1078_RS19190 0.38 -0.6 339,389 + HMPREF1078_RS19190 0.41 +0.2 339,390 - HMPREF1078_RS19190 0.41 +0.1 339,390 - HMPREF1078_RS19190 0.41 -0.6 339,393 + HMPREF1078_RS19190 0.42 -0.3 339,411 + HMPREF1078_RS19190 0.44 +0.5 339,436 - HMPREF1078_RS19190 0.47 -1.3 339,441 + HMPREF1078_RS19190 0.48 -0.9 339,441 + HMPREF1078_RS19190 0.48 +0.4 339,441 + HMPREF1078_RS19190 0.48 -0.7 339,441 + HMPREF1078_RS19190 0.48 +1.1 339,461 + HMPREF1078_RS19190 0.50 +0.9 339,461 + HMPREF1078_RS19190 0.50 -2.3 339,462 - HMPREF1078_RS19190 0.50 +0.3 339,462 - HMPREF1078_RS19190 0.50 -0.0 339,481 - HMPREF1078_RS19190 0.53 -2.2 339,483 + HMPREF1078_RS19190 0.53 -1.3 339,484 - HMPREF1078_RS19190 0.53 +0.0 339,508 - HMPREF1078_RS19190 0.56 +0.9 339,528 + HMPREF1078_RS19190 0.58 -1.0 339,637 - HMPREF1078_RS19190 0.72 +0.1 339,661 + HMPREF1078_RS19190 0.75 -2.1 339,661 + HMPREF1078_RS19190 0.75 -3.5 339,672 + HMPREF1078_RS19190 0.76 -1.4 339,757 - HMPREF1078_RS19190 0.87 -3.5 339,812 + +0.1 339,838 + +0.3 339,839 - +0.2 339,894 - -2.3 340,036 + HMPREF1078_RS19195 0.13 -2.9 340,037 - HMPREF1078_RS19195 0.14 -0.5 340,060 - HMPREF1078_RS19195 0.16 -1.9 340,060 - HMPREF1078_RS19195 0.16 +0.4 340,112 - HMPREF1078_RS19195 0.21 +0.3 340,117 + HMPREF1078_RS19195 0.21 +2.3 340,118 - HMPREF1078_RS19195 0.21 +0.8 340,173 - HMPREF1078_RS19195 0.26 -0.9 340,173 - HMPREF1078_RS19195 0.26 -1.7 340,343 + HMPREF1078_RS19195 0.42 -1.8 340,344 - HMPREF1078_RS19195 0.42 +0.5 340,344 - HMPREF1078_RS19195 0.42 +0.1 340,344 - HMPREF1078_RS19195 0.42 -0.7 340,362 - HMPREF1078_RS19195 0.44 +0.2 340,362 - HMPREF1078_RS19195 0.44 +1.0 340,366 + HMPREF1078_RS19195 0.44 +0.2 340,366 + HMPREF1078_RS19195 0.44 +0.4 340,366 + HMPREF1078_RS19195 0.44 -3.1 340,366 + HMPREF1078_RS19195 0.44 -0.3 340,366 + HMPREF1078_RS19195 0.44 +0.5 340,367 - HMPREF1078_RS19195 0.44 -1.9 340,367 - HMPREF1078_RS19195 0.44 +0.8 340,367 - HMPREF1078_RS19195 0.44 +0.9 340,370 + HMPREF1078_RS19195 0.45 -1.6 340,371 - HMPREF1078_RS19195 0.45 -0.9 340,371 - HMPREF1078_RS19195 0.45 -0.4 340,375 - HMPREF1078_RS19195 0.45 +0.7 340,375 - HMPREF1078_RS19195 0.45 -3.7 340,446 + HMPREF1078_RS19195 0.52 -2.7 340,575 + HMPREF1078_RS19195 0.64 -0.3 340,615 - HMPREF1078_RS19195 0.68 -1.5 340,618 + HMPREF1078_RS19195 0.68 +0.4 340,619 - HMPREF1078_RS19195 0.68 +0.3 340,697 + HMPREF1078_RS19195 0.75 -0.7 340,726 + HMPREF1078_RS19195 0.78 -1.6 340,727 - HMPREF1078_RS19195 0.78 -0.1 340,802 + HMPREF1078_RS19195 0.85 -1.0 340,828 - HMPREF1078_RS19195 0.87 -0.1 340,828 - HMPREF1078_RS19195 0.87 -1.9 340,828 - HMPREF1078_RS19195 0.87 +0.5 340,830 + HMPREF1078_RS19195 0.88 +2.2
Or see this region's nucleotide sequence