Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14435 and HMPREF1078_RS14440 are separated by 96 nucleotides HMPREF1078_RS14440 and HMPREF1078_RS14445 are separated by 23 nucleotides HMPREF1078_RS14445 and HMPREF1078_RS18905 are separated by 96 nucleotides HMPREF1078_RS18905 and HMPREF1078_RS14455 are separated by 164 nucleotides
HMPREF1078_RS14435: HMPREF1078_RS14435 - DNA-binding domain-containing protein, at 378,718 to 379,500
_RS14435
HMPREF1078_RS14440: HMPREF1078_RS14440 - phosphatase PAP2 family protein, at 379,597 to 380,154
_RS14440
HMPREF1078_RS14445: HMPREF1078_RS14445 - hypothetical protein, at 380,178 to 380,387
_RS14445
HMPREF1078_RS18905: HMPREF1078_RS18905 - diacylglycerol kinase family protein, at 380,484 to 380,855
_RS18905
HMPREF1078_RS14455: HMPREF1078_RS14455 - TolC family protein, at 381,020 to 382,501
_RS14455
Position (kb) 380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 379.567 kb on + strand at 379.568 kb on - strand at 379.590 kb on + strand at 379.616 kb on + strand at 379.616 kb on + strand at 379.616 kb on + strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.618 kb on + strand at 379.653 kb on + strand, within HMPREF1078_RS14440 at 379.653 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.778 kb on + strand, within HMPREF1078_RS14440 at 379.779 kb on - strand, within HMPREF1078_RS14440 at 379.779 kb on - strand, within HMPREF1078_RS14440 at 379.848 kb on + strand, within HMPREF1078_RS14440 at 379.848 kb on + strand, within HMPREF1078_RS14440 at 379.922 kb on + strand, within HMPREF1078_RS14440 at 379.934 kb on + strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.941 kb on + strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.947 kb on + strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.951 kb on - strand, within HMPREF1078_RS14440 at 379.951 kb on - strand, within HMPREF1078_RS14440 at 380.005 kb on + strand, within HMPREF1078_RS14440 at 380.058 kb on + strand, within HMPREF1078_RS14440 at 380.058 kb on + strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.159 kb on - strand at 380.159 kb on - strand at 380.159 kb on - strand at 380.162 kb on + strand at 380.162 kb on + strand at 380.163 kb on - strand at 380.169 kb on + strand at 380.179 kb on + strand at 380.180 kb on - strand at 380.180 kb on - strand at 380.198 kb on + strand at 380.210 kb on + strand, within HMPREF1078_RS14445 at 380.220 kb on + strand, within HMPREF1078_RS14445 at 380.229 kb on + strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.236 kb on - strand, within HMPREF1078_RS14445 at 380.247 kb on - strand, within HMPREF1078_RS14445 at 380.288 kb on + strand, within HMPREF1078_RS14445 at 380.326 kb on - strand, within HMPREF1078_RS14445 at 380.374 kb on - strand at 380.387 kb on + strand at 380.407 kb on + strand at 380.408 kb on - strand at 380.412 kb on - strand at 380.426 kb on + strand at 380.427 kb on - strand at 380.466 kb on - strand at 380.466 kb on - strand at 380.466 kb on - strand at 380.535 kb on + strand, within HMPREF1078_RS18905 at 380.535 kb on + strand, within HMPREF1078_RS18905 at 380.536 kb on - strand, within HMPREF1078_RS18905 at 380.544 kb on - strand, within HMPREF1078_RS18905 at 380.548 kb on - strand, within HMPREF1078_RS18905 at 380.611 kb on - strand, within HMPREF1078_RS18905 at 380.704 kb on - strand, within HMPREF1078_RS18905 at 380.726 kb on + strand, within HMPREF1078_RS18905 at 380.739 kb on - strand, within HMPREF1078_RS18905 at 380.755 kb on - strand, within HMPREF1078_RS18905 at 380.779 kb on - strand, within HMPREF1078_RS18905 at 380.784 kb on + strand, within HMPREF1078_RS18905 at 380.807 kb on - strand, within HMPREF1078_RS18905 at 380.858 kb on + strand at 380.859 kb on - strand at 380.863 kb on - strand at 380.892 kb on + strand at 380.892 kb on + strand at 380.893 kb on - strand at 380.895 kb on + strand at 380.895 kb on + strand at 380.896 kb on - strand at 380.896 kb on - strand at 380.896 kb on - strand at 380.898 kb on + strand at 380.916 kb on + strand at 380.917 kb on - strand at 380.917 kb on - strand at 380.917 kb on - strand at 380.969 kb on - strand at 380.969 kb on - strand at 380.970 kb on + strand at 380.970 kb on + strand at 380.971 kb on - strand at 380.983 kb on + strand at 381.014 kb on - strand at 381.016 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.034 kb on + strand at 381.034 kb on + strand at 381.035 kb on - strand at 381.035 kb on - strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.037 kb on - strand at 381.037 kb on - strand at 381.037 kb on - strand at 381.091 kb on + strand at 381.092 kb on - strand at 381.092 kb on - strand at 381.092 kb on - strand at 381.191 kb on + strand, within HMPREF1078_RS14455 at 381.197 kb on - strand, within HMPREF1078_RS14455 at 381.252 kb on - strand, within HMPREF1078_RS14455 at 381.252 kb on - strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.256 kb on + strand, within HMPREF1078_RS14455 at 381.263 kb on + strand, within HMPREF1078_RS14455 at 381.263 kb on + strand, within HMPREF1078_RS14455 at 381.264 kb on - strand, within HMPREF1078_RS14455 at 381.264 kb on - strand, within HMPREF1078_RS14455 at 381.311 kb on - strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.355 kb on - strand, within HMPREF1078_RS14455 at 381.370 kb on + strand, within HMPREF1078_RS14455 at 381.376 kb on - strand, within HMPREF1078_RS14455 at 381.434 kb on + strand, within HMPREF1078_RS14455 at 381.435 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.464 kb on - strand, within HMPREF1078_RS14455 at 381.464 kb on - strand, within HMPREF1078_RS14455 at 381.519 kb on + strand, within HMPREF1078_RS14455 at 381.519 kb on + strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.669 kb on + strand, within HMPREF1078_RS14455 at 381.669 kb on + strand, within HMPREF1078_RS14455 at 381.670 kb on - strand, within HMPREF1078_RS14455 at 381.698 kb on - strand, within HMPREF1078_RS14455 at 381.788 kb on - strand, within HMPREF1078_RS14455
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 379,567 + +0.6 379,568 - -1.2 379,590 + -0.5 379,616 + +0.6 379,616 + +0.1 379,616 + -0.5 379,617 - -1.9 379,617 - -1.0 379,617 - -0.9 379,617 - -0.6 379,617 - +1.0 379,617 - +0.5 379,618 + +0.2 379,653 + HMPREF1078_RS14440 0.10 -0.4 379,653 + HMPREF1078_RS14440 0.10 +0.7 379,757 + HMPREF1078_RS14440 0.29 -0.1 379,757 + HMPREF1078_RS14440 0.29 +0.2 379,757 + HMPREF1078_RS14440 0.29 -0.4 379,757 + HMPREF1078_RS14440 0.29 +0.7 379,757 + HMPREF1078_RS14440 0.29 -0.8 379,758 - HMPREF1078_RS14440 0.29 -3.1 379,758 - HMPREF1078_RS14440 0.29 +0.7 379,758 - HMPREF1078_RS14440 0.29 -0.3 379,778 + HMPREF1078_RS14440 0.32 -0.8 379,779 - HMPREF1078_RS14440 0.33 -0.3 379,779 - HMPREF1078_RS14440 0.33 -0.7 379,848 + HMPREF1078_RS14440 0.45 -1.3 379,848 + HMPREF1078_RS14440 0.45 +0.1 379,922 + HMPREF1078_RS14440 0.58 +0.7 379,934 + HMPREF1078_RS14440 0.60 +0.1 379,935 - HMPREF1078_RS14440 0.61 -1.9 379,935 - HMPREF1078_RS14440 0.61 -0.1 379,935 - HMPREF1078_RS14440 0.61 -1.6 379,935 - HMPREF1078_RS14440 0.61 -0.7 379,935 - HMPREF1078_RS14440 0.61 +0.8 379,941 + HMPREF1078_RS14440 0.62 +0.2 379,942 - HMPREF1078_RS14440 0.62 -1.0 379,942 - HMPREF1078_RS14440 0.62 -0.3 379,942 - HMPREF1078_RS14440 0.62 +0.3 379,945 + HMPREF1078_RS14440 0.62 +0.1 379,945 + HMPREF1078_RS14440 0.62 +0.8 379,945 + HMPREF1078_RS14440 0.62 -0.5 379,945 + HMPREF1078_RS14440 0.62 +0.7 379,945 + HMPREF1078_RS14440 0.62 -0.1 379,945 + HMPREF1078_RS14440 0.62 -0.9 379,946 - HMPREF1078_RS14440 0.63 -0.2 379,946 - HMPREF1078_RS14440 0.63 -1.6 379,946 - HMPREF1078_RS14440 0.63 -1.4 379,946 - HMPREF1078_RS14440 0.63 +0.5 379,946 - HMPREF1078_RS14440 0.63 -1.3 379,946 - HMPREF1078_RS14440 0.63 +0.9 379,946 - HMPREF1078_RS14440 0.63 +1.2 379,946 - HMPREF1078_RS14440 0.63 -0.3 379,946 - HMPREF1078_RS14440 0.63 +0.1 379,946 - HMPREF1078_RS14440 0.63 -1.1 379,946 - HMPREF1078_RS14440 0.63 -0.1 379,947 + HMPREF1078_RS14440 0.63 +0.7 379,948 - HMPREF1078_RS14440 0.63 -2.8 379,948 - HMPREF1078_RS14440 0.63 -0.5 379,948 - HMPREF1078_RS14440 0.63 +0.3 379,948 - HMPREF1078_RS14440 0.63 +0.2 379,951 - HMPREF1078_RS14440 0.63 +0.4 379,951 - HMPREF1078_RS14440 0.63 +0.7 380,005 + HMPREF1078_RS14440 0.73 +1.7 380,058 + HMPREF1078_RS14440 0.83 +0.8 380,058 + HMPREF1078_RS14440 0.83 -0.0 380,059 - HMPREF1078_RS14440 0.83 -0.2 380,059 - HMPREF1078_RS14440 0.83 +1.1 380,059 - HMPREF1078_RS14440 0.83 -0.4 380,059 - HMPREF1078_RS14440 0.83 -0.5 380,159 - -0.2 380,159 - +0.1 380,159 - +0.2 380,162 + +0.1 380,162 + +0.5 380,163 - +1.4 380,169 + -0.2 380,179 + -0.3 380,180 - +0.0 380,180 - +0.7 380,198 + -0.4 380,210 + HMPREF1078_RS14445 0.15 +1.0 380,220 + HMPREF1078_RS14445 0.20 +0.5 380,229 + HMPREF1078_RS14445 0.24 -0.2 380,230 - HMPREF1078_RS14445 0.25 -0.9 380,230 - HMPREF1078_RS14445 0.25 -0.9 380,230 - HMPREF1078_RS14445 0.25 -1.5 380,236 - HMPREF1078_RS14445 0.28 -0.2 380,247 - HMPREF1078_RS14445 0.33 -0.8 380,288 + HMPREF1078_RS14445 0.52 -0.2 380,326 - HMPREF1078_RS14445 0.70 -0.5 380,374 - -0.7 380,387 + +1.1 380,407 + +0.9 380,408 - +0.8 380,412 - +0.4 380,426 + +0.2 380,427 - +0.6 380,466 - +0.4 380,466 - +1.0 380,466 - +0.4 380,535 + HMPREF1078_RS18905 0.14 -0.6 380,535 + HMPREF1078_RS18905 0.14 -0.9 380,536 - HMPREF1078_RS18905 0.14 -2.4 380,544 - HMPREF1078_RS18905 0.16 -0.5 380,548 - HMPREF1078_RS18905 0.17 -2.1 380,611 - HMPREF1078_RS18905 0.34 -0.9 380,704 - HMPREF1078_RS18905 0.59 +0.9 380,726 + HMPREF1078_RS18905 0.65 -0.3 380,739 - HMPREF1078_RS18905 0.69 -1.3 380,755 - HMPREF1078_RS18905 0.73 +0.0 380,779 - HMPREF1078_RS18905 0.79 -2.5 380,784 + HMPREF1078_RS18905 0.81 -0.8 380,807 - HMPREF1078_RS18905 0.87 -2.6 380,858 + -0.1 380,859 - -1.3 380,863 - +0.4 380,892 + -0.9 380,892 + -1.1 380,893 - -0.1 380,895 + -0.9 380,895 + -0.5 380,896 - -0.1 380,896 - -1.2 380,896 - -2.0 380,898 + -2.0 380,916 + +0.4 380,917 - -1.9 380,917 - +0.3 380,917 - -0.6 380,969 - -2.2 380,969 - -0.2 380,970 + +1.3 380,970 + +0.2 380,971 - +0.4 380,983 + -0.2 381,014 - +0.7 381,016 + -0.2 381,032 + -1.9 381,032 + -0.3 381,032 + -0.8 381,032 + -0.1 381,032 + -1.4 381,032 + +0.1 381,033 - -0.8 381,033 - +0.0 381,033 - -1.4 381,033 - -1.3 381,033 - -1.5 381,033 - -1.4 381,034 + +0.5 381,034 + +0.6 381,035 - -0.9 381,035 - +0.5 381,036 + +1.5 381,036 + +0.8 381,036 + +0.4 381,036 + -0.2 381,036 + +0.9 381,036 + +0.8 381,037 - +0.2 381,037 - +0.1 381,037 - -1.6 381,091 + -2.1 381,092 - -0.5 381,092 - -0.1 381,092 - -1.3 381,191 + HMPREF1078_RS14455 0.12 -0.4 381,197 - HMPREF1078_RS14455 0.12 -0.9 381,252 - HMPREF1078_RS14455 0.16 -2.6 381,252 - HMPREF1078_RS14455 0.16 -0.7 381,253 + HMPREF1078_RS14455 0.16 +0.1 381,253 + HMPREF1078_RS14455 0.16 +0.2 381,253 + HMPREF1078_RS14455 0.16 +1.8 381,256 + HMPREF1078_RS14455 0.16 +3.9 381,263 + HMPREF1078_RS14455 0.16 +0.2 381,263 + HMPREF1078_RS14455 0.16 -0.6 381,264 - HMPREF1078_RS14455 0.16 +0.2 381,264 - HMPREF1078_RS14455 0.16 -1.1 381,311 - HMPREF1078_RS14455 0.20 +0.9 381,352 + HMPREF1078_RS14455 0.22 +0.0 381,352 + HMPREF1078_RS14455 0.22 -0.3 381,352 + HMPREF1078_RS14455 0.22 +0.5 381,355 - HMPREF1078_RS14455 0.23 -0.9 381,370 + HMPREF1078_RS14455 0.24 -0.0 381,376 - HMPREF1078_RS14455 0.24 +1.3 381,434 + HMPREF1078_RS14455 0.28 -0.6 381,435 - HMPREF1078_RS14455 0.28 -0.8 381,437 - HMPREF1078_RS14455 0.28 -1.7 381,437 - HMPREF1078_RS14455 0.28 +1.7 381,437 - HMPREF1078_RS14455 0.28 -1.2 381,464 - HMPREF1078_RS14455 0.30 +0.7 381,464 - HMPREF1078_RS14455 0.30 -0.2 381,519 + HMPREF1078_RS14455 0.34 +1.4 381,519 + HMPREF1078_RS14455 0.34 -0.0 381,626 - HMPREF1078_RS14455 0.41 -0.5 381,626 - HMPREF1078_RS14455 0.41 +1.9 381,626 - HMPREF1078_RS14455 0.41 -0.2 381,626 - HMPREF1078_RS14455 0.41 +0.5 381,626 - HMPREF1078_RS14455 0.41 +2.3 381,669 + HMPREF1078_RS14455 0.44 +0.6 381,669 + HMPREF1078_RS14455 0.44 -1.7 381,670 - HMPREF1078_RS14455 0.44 -0.8 381,698 - HMPREF1078_RS14455 0.46 -0.1 381,788 - HMPREF1078_RS14455 0.52 -1.0
Or see this region's nucleotide sequence