Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19865 and HMPREF1078_RS08165 are separated by 118 nucleotides HMPREF1078_RS08165 and HMPREF1078_RS19560 are separated by 177 nucleotides HMPREF1078_RS19560 and HMPREF1078_RS18645 are separated by 128 nucleotides HMPREF1078_RS18645 and HMPREF1078_RS08170 are separated by 210 nucleotides HMPREF1078_RS08170 and HMPREF1078_RS08175 are separated by 54 nucleotides
HMPREF1078_RS19865: HMPREF1078_RS19865 - hypothetical protein, at 201,442 to 201,696
_RS19865
HMPREF1078_RS08165: HMPREF1078_RS08165 - helix-turn-helix domain-containing protein, at 201,815 to 202,027
_RS08165
HMPREF1078_RS19560: HMPREF1078_RS19560 - Ppx/GppA family phosphatase, at 202,205 to 202,381
_RS19560
HMPREF1078_RS18645: HMPREF1078_RS18645 - transposase, at 202,510 to 202,638
_RS18645
HMPREF1078_RS08170: HMPREF1078_RS08170 - methylglyoxal synthase, at 202,849 to 203,385
_RS08170
HMPREF1078_RS08175: HMPREF1078_RS08175 - arginase family protein, at 203,440 to 204,249
_RS08175
Position (kb) 202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.536 kb on + strand, within HMPREF1078_RS19865 at 201.537 kb on - strand, within HMPREF1078_RS19865 at 201.537 kb on - strand, within HMPREF1078_RS19865 at 201.541 kb on + strand, within HMPREF1078_RS19865 at 201.542 kb on - strand, within HMPREF1078_RS19865 at 201.542 kb on - strand, within HMPREF1078_RS19865 at 201.543 kb on + strand, within HMPREF1078_RS19865 at 201.543 kb on + strand, within HMPREF1078_RS19865 at 201.544 kb on - strand, within HMPREF1078_RS19865 at 201.544 kb on - strand, within HMPREF1078_RS19865 at 201.558 kb on + strand, within HMPREF1078_RS19865 at 201.558 kb on + strand, within HMPREF1078_RS19865 at 201.571 kb on - strand, within HMPREF1078_RS19865 at 201.581 kb on + strand, within HMPREF1078_RS19865 at 201.584 kb on + strand, within HMPREF1078_RS19865 at 201.585 kb on - strand, within HMPREF1078_RS19865 at 201.585 kb on - strand, within HMPREF1078_RS19865 at 201.610 kb on + strand, within HMPREF1078_RS19865 at 201.610 kb on + strand, within HMPREF1078_RS19865 at 201.641 kb on - strand, within HMPREF1078_RS19865 at 201.689 kb on + strand at 201.690 kb on - strand at 201.710 kb on + strand at 201.769 kb on + strand at 201.769 kb on + strand at 201.770 kb on - strand at 201.770 kb on - strand at 201.770 kb on - strand at 201.773 kb on + strand at 201.773 kb on + strand at 201.773 kb on + strand at 201.774 kb on - strand at 201.774 kb on - strand at 201.898 kb on - strand, within HMPREF1078_RS08165 at 201.901 kb on - strand, within HMPREF1078_RS08165 at 201.901 kb on - strand, within HMPREF1078_RS08165 at 201.904 kb on + strand, within HMPREF1078_RS08165 at 201.904 kb on + strand, within HMPREF1078_RS08165 at 201.905 kb on - strand, within HMPREF1078_RS08165 at 201.905 kb on - strand, within HMPREF1078_RS08165 at 202.062 kb on + strand at 202.066 kb on + strand at 202.067 kb on - strand at 202.154 kb on - strand at 202.202 kb on + strand at 202.203 kb on - strand at 202.222 kb on + strand at 202.249 kb on + strand, within HMPREF1078_RS19560 at 202.249 kb on + strand, within HMPREF1078_RS19560 at 202.249 kb on + strand, within HMPREF1078_RS19560 at 202.250 kb on - strand, within HMPREF1078_RS19560 at 202.278 kb on + strand, within HMPREF1078_RS19560 at 202.289 kb on - strand, within HMPREF1078_RS19560 at 202.304 kb on + strand, within HMPREF1078_RS19560 at 202.305 kb on - strand, within HMPREF1078_RS19560 at 202.306 kb on + strand, within HMPREF1078_RS19560 at 202.330 kb on - strand, within HMPREF1078_RS19560 at 202.330 kb on - strand, within HMPREF1078_RS19560 at 202.340 kb on - strand, within HMPREF1078_RS19560 at 202.362 kb on + strand, within HMPREF1078_RS19560 at 202.362 kb on + strand, within HMPREF1078_RS19560 at 202.363 kb on - strand, within HMPREF1078_RS19560 at 202.363 kb on - strand, within HMPREF1078_RS19560 at 202.363 kb on - strand, within HMPREF1078_RS19560 at 202.364 kb on + strand at 202.405 kb on - strand at 202.409 kb on - strand at 202.409 kb on - strand at 202.422 kb on + strand at 202.422 kb on + strand at 202.445 kb on + strand at 202.456 kb on - strand at 202.485 kb on + strand at 202.491 kb on + strand at 202.491 kb on + strand at 202.624 kb on - strand, within HMPREF1078_RS18645 at 202.630 kb on + strand at 202.631 kb on - strand at 202.631 kb on - strand at 202.637 kb on - strand at 202.716 kb on - strand at 202.722 kb on + strand at 202.723 kb on - strand at 202.757 kb on - strand at 202.765 kb on - strand at 202.778 kb on + strand at 202.778 kb on + strand at 202.779 kb on - strand at 202.782 kb on + strand at 202.782 kb on + strand at 202.782 kb on + strand at 202.783 kb on - strand at 202.783 kb on - strand at 202.783 kb on - strand at 202.796 kb on + strand at 202.796 kb on + strand at 202.812 kb on + strand at 202.812 kb on + strand at 202.813 kb on - strand at 202.822 kb on + strand at 202.823 kb on - strand at 202.823 kb on - strand at 202.824 kb on + strand at 202.824 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.837 kb on - strand at 202.837 kb on - strand at 202.843 kb on + strand at 202.843 kb on + strand at 202.843 kb on + strand at 202.864 kb on - strand at 202.912 kb on + strand, within HMPREF1078_RS08170 at 202.943 kb on + strand, within HMPREF1078_RS08170 at 202.943 kb on + strand, within HMPREF1078_RS08170 at 202.965 kb on + strand, within HMPREF1078_RS08170 at 202.973 kb on + strand, within HMPREF1078_RS08170 at 203.002 kb on - strand, within HMPREF1078_RS08170 at 203.004 kb on + strand, within HMPREF1078_RS08170 at 203.005 kb on - strand, within HMPREF1078_RS08170 at 203.044 kb on - strand, within HMPREF1078_RS08170 at 203.098 kb on + strand, within HMPREF1078_RS08170 at 203.116 kb on - strand, within HMPREF1078_RS08170 at 203.130 kb on - strand, within HMPREF1078_RS08170 at 203.130 kb on - strand, within HMPREF1078_RS08170 at 203.147 kb on - strand, within HMPREF1078_RS08170 at 203.252 kb on - strand, within HMPREF1078_RS08170 at 203.266 kb on - strand, within HMPREF1078_RS08170 at 203.271 kb on + strand, within HMPREF1078_RS08170 at 203.271 kb on + strand, within HMPREF1078_RS08170 at 203.272 kb on - strand, within HMPREF1078_RS08170 at 203.277 kb on - strand, within HMPREF1078_RS08170 at 203.290 kb on + strand, within HMPREF1078_RS08170 at 203.323 kb on + strand, within HMPREF1078_RS08170 at 203.323 kb on + strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.392 kb on - strand at 203.418 kb on + strand at 203.419 kb on - strand at 203.419 kb on - strand at 203.419 kb on - strand at 203.421 kb on - strand at 203.421 kb on - strand at 203.569 kb on + strand, within HMPREF1078_RS08175 at 203.569 kb on + strand, within HMPREF1078_RS08175 at 203.572 kb on + strand, within HMPREF1078_RS08175 at 203.573 kb on - strand, within HMPREF1078_RS08175
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 201,536 + HMPREF1078_RS19865 0.37 +0.5 201,537 - HMPREF1078_RS19865 0.37 -0.9 201,537 - HMPREF1078_RS19865 0.37 -0.6 201,541 + HMPREF1078_RS19865 0.39 +0.7 201,542 - HMPREF1078_RS19865 0.39 -1.2 201,542 - HMPREF1078_RS19865 0.39 +0.3 201,543 + HMPREF1078_RS19865 0.40 +0.8 201,543 + HMPREF1078_RS19865 0.40 -1.7 201,544 - HMPREF1078_RS19865 0.40 +0.3 201,544 - HMPREF1078_RS19865 0.40 -0.7 201,558 + HMPREF1078_RS19865 0.45 -0.7 201,558 + HMPREF1078_RS19865 0.45 -0.6 201,571 - HMPREF1078_RS19865 0.51 +1.4 201,581 + HMPREF1078_RS19865 0.55 +0.1 201,584 + HMPREF1078_RS19865 0.56 -1.0 201,585 - HMPREF1078_RS19865 0.56 +0.9 201,585 - HMPREF1078_RS19865 0.56 -2.3 201,610 + HMPREF1078_RS19865 0.66 -0.8 201,610 + HMPREF1078_RS19865 0.66 +0.8 201,641 - HMPREF1078_RS19865 0.78 -1.8 201,689 + +0.5 201,690 - -1.8 201,710 + +0.3 201,769 + -0.9 201,769 + +0.9 201,770 - +0.5 201,770 - -0.2 201,770 - -1.2 201,773 + +0.1 201,773 + +0.2 201,773 + -0.8 201,774 - -2.1 201,774 - +1.1 201,898 - HMPREF1078_RS08165 0.39 +1.3 201,901 - HMPREF1078_RS08165 0.40 +0.0 201,901 - HMPREF1078_RS08165 0.40 -0.1 201,904 + HMPREF1078_RS08165 0.42 -1.9 201,904 + HMPREF1078_RS08165 0.42 -1.3 201,905 - HMPREF1078_RS08165 0.42 -0.2 201,905 - HMPREF1078_RS08165 0.42 -3.6 202,062 + -2.4 202,066 + +1.4 202,067 - +1.3 202,154 - -2.1 202,202 + +0.8 202,203 - +0.9 202,222 + +0.8 202,249 + HMPREF1078_RS19560 0.25 +0.0 202,249 + HMPREF1078_RS19560 0.25 -0.9 202,249 + HMPREF1078_RS19560 0.25 -1.3 202,250 - HMPREF1078_RS19560 0.25 +0.7 202,278 + HMPREF1078_RS19560 0.41 -1.8 202,289 - HMPREF1078_RS19560 0.47 +0.6 202,304 + HMPREF1078_RS19560 0.56 -0.1 202,305 - HMPREF1078_RS19560 0.56 -0.1 202,306 + HMPREF1078_RS19560 0.57 -1.4 202,330 - HMPREF1078_RS19560 0.71 +0.2 202,330 - HMPREF1078_RS19560 0.71 -0.3 202,340 - HMPREF1078_RS19560 0.76 -1.0 202,362 + HMPREF1078_RS19560 0.89 -1.2 202,362 + HMPREF1078_RS19560 0.89 -0.2 202,363 - HMPREF1078_RS19560 0.89 +0.8 202,363 - HMPREF1078_RS19560 0.89 -0.9 202,363 - HMPREF1078_RS19560 0.89 -1.2 202,364 + +1.3 202,405 - +1.6 202,409 - +0.2 202,409 - -0.6 202,422 + +0.8 202,422 + -1.6 202,445 + -0.8 202,456 - +0.3 202,485 + -1.7 202,491 + +0.4 202,491 + +0.2 202,624 - HMPREF1078_RS18645 0.88 -1.4 202,630 + -1.0 202,631 - +1.0 202,631 - +0.3 202,637 - +0.4 202,716 - -1.1 202,722 + -1.1 202,723 - -1.3 202,757 - +0.1 202,765 - +1.0 202,778 + -0.1 202,778 + -0.0 202,779 - +1.1 202,782 + +0.1 202,782 + -0.2 202,782 + +0.2 202,783 - -1.3 202,783 - +1.5 202,783 - +0.1 202,796 + +0.3 202,796 + -1.6 202,812 + +0.3 202,812 + -1.8 202,813 - -0.2 202,822 + +0.3 202,823 - +0.3 202,823 - -0.5 202,824 + +2.4 202,824 + +0.4 202,828 + -0.3 202,828 + -0.1 202,828 + -0.2 202,828 + +0.5 202,837 - -0.7 202,837 - -1.0 202,843 + +0.8 202,843 + +0.4 202,843 + +1.3 202,864 - +0.7 202,912 + HMPREF1078_RS08170 0.12 +0.1 202,943 + HMPREF1078_RS08170 0.18 -1.4 202,943 + HMPREF1078_RS08170 0.18 +0.1 202,965 + HMPREF1078_RS08170 0.22 -1.3 202,973 + HMPREF1078_RS08170 0.23 +0.4 203,002 - HMPREF1078_RS08170 0.28 +0.3 203,004 + HMPREF1078_RS08170 0.29 -0.1 203,005 - HMPREF1078_RS08170 0.29 -1.9 203,044 - HMPREF1078_RS08170 0.36 +0.5 203,098 + HMPREF1078_RS08170 0.46 -1.0 203,116 - HMPREF1078_RS08170 0.50 +0.3 203,130 - HMPREF1078_RS08170 0.52 +0.9 203,130 - HMPREF1078_RS08170 0.52 -0.5 203,147 - HMPREF1078_RS08170 0.55 +0.1 203,252 - HMPREF1078_RS08170 0.75 -0.0 203,266 - HMPREF1078_RS08170 0.78 -0.5 203,271 + HMPREF1078_RS08170 0.79 +0.4 203,271 + HMPREF1078_RS08170 0.79 +0.7 203,272 - HMPREF1078_RS08170 0.79 -0.6 203,277 - HMPREF1078_RS08170 0.80 +0.2 203,290 + HMPREF1078_RS08170 0.82 -0.6 203,323 + HMPREF1078_RS08170 0.88 -0.4 203,323 + HMPREF1078_RS08170 0.88 -1.2 203,324 - HMPREF1078_RS08170 0.88 -0.2 203,324 - HMPREF1078_RS08170 0.88 -2.4 203,324 - HMPREF1078_RS08170 0.88 -1.7 203,324 - HMPREF1078_RS08170 0.88 -0.6 203,392 - -0.9 203,418 + -0.1 203,419 - +0.7 203,419 - -0.2 203,419 - +0.7 203,421 - +0.4 203,421 - -0.9 203,569 + HMPREF1078_RS08175 0.16 -1.2 203,569 + HMPREF1078_RS08175 0.16 -1.7 203,572 + HMPREF1078_RS08175 0.16 -2.3 203,573 - HMPREF1078_RS08175 0.16 -3.5
Or see this region's nucleotide sequence