Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17640 and HMPREF1078_RS17650 are separated by 310 nucleotides HMPREF1078_RS17650 and HMPREF1078_RS17655 are separated by 243 nucleotides
HMPREF1078_RS17640: HMPREF1078_RS17640 - GH92 family glycosyl hydrolase, at 92,093 to 94,414
_RS17640
HMPREF1078_RS17650: HMPREF1078_RS17650 - hypothetical protein, at 94,725 to 96,416
_RS17650
HMPREF1078_RS17655: HMPREF1078_RS17655 - trypsin-like peptidase domain-containing protein, at 96,660 to 98,318
_RS17655
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 93.753 kb on + strand, within HMPREF1078_RS17640 at 93.758 kb on - strand, within HMPREF1078_RS17640 at 93.758 kb on - strand, within HMPREF1078_RS17640 at 93.760 kb on - strand, within HMPREF1078_RS17640 at 93.792 kb on + strand, within HMPREF1078_RS17640 at 93.852 kb on + strand, within HMPREF1078_RS17640 at 93.909 kb on + strand, within HMPREF1078_RS17640 at 93.915 kb on + strand, within HMPREF1078_RS17640 at 93.915 kb on + strand, within HMPREF1078_RS17640 at 93.915 kb on + strand, within HMPREF1078_RS17640 at 93.915 kb on + strand, within HMPREF1078_RS17640 at 93.916 kb on - strand, within HMPREF1078_RS17640 at 93.916 kb on - strand, within HMPREF1078_RS17640 at 93.916 kb on - strand, within HMPREF1078_RS17640 at 93.990 kb on + strand, within HMPREF1078_RS17640 at 93.990 kb on + strand, within HMPREF1078_RS17640 at 93.991 kb on - strand, within HMPREF1078_RS17640 at 94.060 kb on + strand, within HMPREF1078_RS17640 at 94.194 kb on + strand at 94.194 kb on + strand at 94.216 kb on - strand at 94.260 kb on - strand at 94.260 kb on - strand at 94.265 kb on + strand at 94.266 kb on - strand at 94.266 kb on - strand at 94.266 kb on - strand at 94.300 kb on + strand at 94.300 kb on + strand at 94.301 kb on - strand at 94.301 kb on - strand at 94.301 kb on - strand at 94.301 kb on - strand at 94.414 kb on + strand at 94.414 kb on + strand at 94.414 kb on + strand at 94.414 kb on + strand at 94.414 kb on + strand at 94.415 kb on - strand at 94.415 kb on - strand at 94.437 kb on - strand at 94.493 kb on + strand at 94.498 kb on - strand at 94.501 kb on + strand at 94.501 kb on + strand at 94.502 kb on - strand at 94.502 kb on - strand at 94.502 kb on - strand at 94.567 kb on + strand at 94.602 kb on + strand at 94.603 kb on - strand at 94.633 kb on + strand at 94.707 kb on + strand at 94.714 kb on + strand at 94.715 kb on - strand at 94.715 kb on - strand at 94.715 kb on - strand at 94.715 kb on - strand at 94.727 kb on - strand at 94.727 kb on - strand at 94.727 kb on - strand at 94.730 kb on + strand at 94.730 kb on + strand at 94.731 kb on - strand at 94.763 kb on - strand at 94.763 kb on - strand at 94.842 kb on - strand at 94.862 kb on + strand at 94.878 kb on - strand at 94.889 kb on - strand at 94.899 kb on - strand, within HMPREF1078_RS17650 at 94.989 kb on - strand, within HMPREF1078_RS17650 at 95.039 kb on - strand, within HMPREF1078_RS17650 at 95.140 kb on - strand, within HMPREF1078_RS17650 at 95.151 kb on - strand, within HMPREF1078_RS17650 at 95.170 kb on - strand, within HMPREF1078_RS17650 at 95.270 kb on - strand, within HMPREF1078_RS17650 at 95.270 kb on - strand, within HMPREF1078_RS17650 at 95.479 kb on + strand, within HMPREF1078_RS17650 at 95.536 kb on - strand, within HMPREF1078_RS17650 at 95.573 kb on + strand, within HMPREF1078_RS17650 at 95.574 kb on - strand, within HMPREF1078_RS17650 at 95.574 kb on - strand, within HMPREF1078_RS17650 at 95.584 kb on - strand, within HMPREF1078_RS17650 at 95.621 kb on - strand, within HMPREF1078_RS17650 at 95.667 kb on - strand, within HMPREF1078_RS17650 at 95.674 kb on + strand, within HMPREF1078_RS17650 at 95.674 kb on + strand, within HMPREF1078_RS17650 at 95.675 kb on - strand, within HMPREF1078_RS17650 at 95.723 kb on + strand, within HMPREF1078_RS17650 at 95.767 kb on - strand, within HMPREF1078_RS17650 at 95.906 kb on + strand, within HMPREF1078_RS17650 at 95.907 kb on - strand, within HMPREF1078_RS17650 at 95.946 kb on - strand, within HMPREF1078_RS17650 at 95.970 kb on - strand, within HMPREF1078_RS17650 at 96.104 kb on + strand, within HMPREF1078_RS17650 at 96.104 kb on + strand, within HMPREF1078_RS17650 at 96.160 kb on + strand, within HMPREF1078_RS17650 at 96.160 kb on + strand, within HMPREF1078_RS17650 at 96.161 kb on - strand, within HMPREF1078_RS17650 at 96.161 kb on - strand, within HMPREF1078_RS17650 at 96.167 kb on - strand, within HMPREF1078_RS17650 at 96.220 kb on - strand, within HMPREF1078_RS17650 at 96.220 kb on - strand, within HMPREF1078_RS17650 at 96.220 kb on - strand, within HMPREF1078_RS17650 at 96.263 kb on + strand at 96.264 kb on - strand at 96.264 kb on - strand at 96.264 kb on - strand at 96.266 kb on + strand at 96.322 kb on + strand at 96.323 kb on - strand at 96.400 kb on - strand at 96.427 kb on - strand at 96.427 kb on - strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.443 kb on + strand at 96.444 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.450 kb on - strand at 96.452 kb on - strand at 96.454 kb on - strand at 96.454 kb on - strand at 96.546 kb on - strand at 96.553 kb on - strand at 96.555 kb on + strand at 96.601 kb on - strand at 96.697 kb on + strand at 96.713 kb on + strand at 96.713 kb on + strand at 96.714 kb on - strand at 96.715 kb on + strand at 96.715 kb on + strand at 96.717 kb on + strand at 96.769 kb on + strand at 96.780 kb on + strand at 96.781 kb on - strand at 96.782 kb on + strand at 96.782 kb on + strand at 96.854 kb on + strand, within HMPREF1078_RS17655 at 96.900 kb on + strand, within HMPREF1078_RS17655 at 96.901 kb on - strand, within HMPREF1078_RS17655 at 96.901 kb on - strand, within HMPREF1078_RS17655 at 97.002 kb on - strand, within HMPREF1078_RS17655 at 97.004 kb on + strand, within HMPREF1078_RS17655 at 97.032 kb on + strand, within HMPREF1078_RS17655 at 97.148 kb on + strand, within HMPREF1078_RS17655 at 97.148 kb on + strand, within HMPREF1078_RS17655 at 97.170 kb on + strand, within HMPREF1078_RS17655 at 97.230 kb on + strand, within HMPREF1078_RS17655 at 97.250 kb on + strand, within HMPREF1078_RS17655 at 97.283 kb on + strand, within HMPREF1078_RS17655 at 97.283 kb on + strand, within HMPREF1078_RS17655 at 97.289 kb on + strand, within HMPREF1078_RS17655 at 97.289 kb on + strand, within HMPREF1078_RS17655 at 97.289 kb on + strand, within HMPREF1078_RS17655 at 97.289 kb on + strand, within HMPREF1078_RS17655 at 97.290 kb on - strand, within HMPREF1078_RS17655 at 97.290 kb on - strand, within HMPREF1078_RS17655 at 97.290 kb on - strand, within HMPREF1078_RS17655 at 97.290 kb on - strand, within HMPREF1078_RS17655 at 97.291 kb on + strand, within HMPREF1078_RS17655 at 97.331 kb on - strand, within HMPREF1078_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 93,753 + HMPREF1078_RS17640 0.71 +0.1 93,758 - HMPREF1078_RS17640 0.72 -0.3 93,758 - HMPREF1078_RS17640 0.72 -0.0 93,760 - HMPREF1078_RS17640 0.72 -0.8 93,792 + HMPREF1078_RS17640 0.73 -0.5 93,852 + HMPREF1078_RS17640 0.76 -1.1 93,909 + HMPREF1078_RS17640 0.78 -1.5 93,915 + HMPREF1078_RS17640 0.78 +1.2 93,915 + HMPREF1078_RS17640 0.78 +0.1 93,915 + HMPREF1078_RS17640 0.78 +1.0 93,915 + HMPREF1078_RS17640 0.78 +0.4 93,916 - HMPREF1078_RS17640 0.79 +0.2 93,916 - HMPREF1078_RS17640 0.79 +0.6 93,916 - HMPREF1078_RS17640 0.79 -0.8 93,990 + HMPREF1078_RS17640 0.82 -0.2 93,990 + HMPREF1078_RS17640 0.82 +0.2 93,991 - HMPREF1078_RS17640 0.82 +0.9 94,060 + HMPREF1078_RS17640 0.85 -0.9 94,194 + -1.3 94,194 + +0.3 94,216 - +0.1 94,260 - -0.6 94,260 - +1.4 94,265 + +0.8 94,266 - +0.9 94,266 - +2.0 94,266 - -0.6 94,300 + -0.2 94,300 + +1.0 94,301 - +0.4 94,301 - -0.4 94,301 - +1.4 94,301 - -0.4 94,414 + -1.3 94,414 + +0.3 94,414 + -2.0 94,414 + +0.4 94,414 + -0.5 94,415 - -0.2 94,415 - +0.8 94,437 - -0.1 94,493 + +0.4 94,498 - -0.9 94,501 + -0.3 94,501 + +0.4 94,502 - +2.0 94,502 - -0.7 94,502 - -1.6 94,567 + -0.1 94,602 + -0.8 94,603 - -0.3 94,633 + -0.5 94,707 + -1.2 94,714 + -0.9 94,715 - -1.3 94,715 - +1.9 94,715 - -0.5 94,715 - +0.8 94,727 - -0.9 94,727 - +2.5 94,727 - +1.1 94,730 + +0.6 94,730 + +0.7 94,731 - +0.5 94,763 - +0.5 94,763 - +1.9 94,842 - +0.5 94,862 + +2.5 94,878 - +1.5 94,889 - -0.8 94,899 - HMPREF1078_RS17650 0.10 +0.9 94,989 - HMPREF1078_RS17650 0.16 -0.5 95,039 - HMPREF1078_RS17650 0.19 +1.0 95,140 - HMPREF1078_RS17650 0.25 -0.6 95,151 - HMPREF1078_RS17650 0.25 +0.2 95,170 - HMPREF1078_RS17650 0.26 +2.1 95,270 - HMPREF1078_RS17650 0.32 -0.0 95,270 - HMPREF1078_RS17650 0.32 +1.5 95,479 + HMPREF1078_RS17650 0.45 +1.2 95,536 - HMPREF1078_RS17650 0.48 +1.3 95,573 + HMPREF1078_RS17650 0.50 -0.3 95,574 - HMPREF1078_RS17650 0.50 +2.5 95,574 - HMPREF1078_RS17650 0.50 -0.2 95,584 - HMPREF1078_RS17650 0.51 -1.4 95,621 - HMPREF1078_RS17650 0.53 +0.5 95,667 - HMPREF1078_RS17650 0.56 +1.4 95,674 + HMPREF1078_RS17650 0.56 +1.0 95,674 + HMPREF1078_RS17650 0.56 -0.6 95,675 - HMPREF1078_RS17650 0.56 +0.2 95,723 + HMPREF1078_RS17650 0.59 +0.7 95,767 - HMPREF1078_RS17650 0.62 +0.2 95,906 + HMPREF1078_RS17650 0.70 -0.3 95,907 - HMPREF1078_RS17650 0.70 +0.5 95,946 - HMPREF1078_RS17650 0.72 +3.5 95,970 - HMPREF1078_RS17650 0.74 -0.3 96,104 + HMPREF1078_RS17650 0.82 -0.0 96,104 + HMPREF1078_RS17650 0.82 +0.5 96,160 + HMPREF1078_RS17650 0.85 +0.2 96,160 + HMPREF1078_RS17650 0.85 +2.5 96,161 - HMPREF1078_RS17650 0.85 +2.5 96,161 - HMPREF1078_RS17650 0.85 +0.2 96,167 - HMPREF1078_RS17650 0.85 -1.6 96,220 - HMPREF1078_RS17650 0.88 -1.2 96,220 - HMPREF1078_RS17650 0.88 +0.5 96,220 - HMPREF1078_RS17650 0.88 -0.3 96,263 + -0.0 96,264 - -0.0 96,264 - +4.1 96,264 - +1.5 96,266 + +0.5 96,322 + +1.0 96,323 - -0.8 96,400 - +2.5 96,427 - +1.0 96,427 - -0.3 96,441 - -0.3 96,441 - +0.6 96,443 + +1.2 96,444 - +1.0 96,450 - +0.5 96,450 - +0.5 96,450 - -1.6 96,450 - +0.3 96,450 - -0.1 96,450 - +1.1 96,450 - +0.7 96,450 - +0.1 96,452 - +0.5 96,454 - -0.5 96,454 - +0.4 96,546 - +1.0 96,553 - +0.4 96,555 + -1.5 96,601 - +1.2 96,697 + +0.1 96,713 + +0.2 96,713 + -0.5 96,714 - +0.9 96,715 + +0.7 96,715 + -1.5 96,717 + -0.7 96,769 + -1.3 96,780 + +1.3 96,781 - +0.4 96,782 + +0.3 96,782 + +0.3 96,854 + HMPREF1078_RS17655 0.12 +0.3 96,900 + HMPREF1078_RS17655 0.14 +2.1 96,901 - HMPREF1078_RS17655 0.15 -0.8 96,901 - HMPREF1078_RS17655 0.15 +0.1 97,002 - HMPREF1078_RS17655 0.21 +0.4 97,004 + HMPREF1078_RS17655 0.21 +0.7 97,032 + HMPREF1078_RS17655 0.22 -1.7 97,148 + HMPREF1078_RS17655 0.29 -3.0 97,148 + HMPREF1078_RS17655 0.29 -0.4 97,170 + HMPREF1078_RS17655 0.31 +0.4 97,230 + HMPREF1078_RS17655 0.34 -1.8 97,250 + HMPREF1078_RS17655 0.36 +0.2 97,283 + HMPREF1078_RS17655 0.38 +0.2 97,283 + HMPREF1078_RS17655 0.38 -1.3 97,289 + HMPREF1078_RS17655 0.38 -0.9 97,289 + HMPREF1078_RS17655 0.38 +0.1 97,289 + HMPREF1078_RS17655 0.38 +2.4 97,289 + HMPREF1078_RS17655 0.38 -0.4 97,290 - HMPREF1078_RS17655 0.38 -1.3 97,290 - HMPREF1078_RS17655 0.38 +0.6 97,290 - HMPREF1078_RS17655 0.38 +0.6 97,290 - HMPREF1078_RS17655 0.38 +0.1 97,291 + HMPREF1078_RS17655 0.38 -0.9 97,331 - HMPREF1078_RS17655 0.40 +1.1
Or see this region's nucleotide sequence