Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17040

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
115,147	+				+0.1
115,247	+				+0.1
115,248	-				-1.9
115,248	-				-3.1
115,248	-				-0.1
115,251	-				+0.8
115,265	+				-0.1
115,265	+				-1.9
115,268	+				+0.5
115,277	+				-0.3
115,278	-				+0.3
115,298	-				-0.2
115,345	-				-1.3
115,425	+				+0.2
115,484	-				-1.9
115,786	-				-0.7
115,821	+				-1.1
115,839	-				-0.5
115,862	-				-0.7
115,862	-				-0.8
115,865	-				-0.2
115,982	+				-2.5
115,982	+				-0.5
115,982	+				-0.2
115,982	+				-0.5
115,982	+				-0.4
115,982	+				+0.4
115,983	-				-0.6
115,983	-				-3.7
115,983	-				-0.2
115,983	-				-0.0
116,026	+				-1.6
116,036	-				-0.2
116,036	-				-0.3
116,042	+				+1.5
116,042	+				-0.5
116,042	+				-1.2
116,050	-				-0.9
116,090	-				+0.2
116,090	-				-0.2
116,144	-				-0.5
116,147	+				+0.9
116,147	+				-2.0
116,148	-				-0.7
116,203	-				+0.5
116,284	-				+1.0
116,284	-				+0.2
116,422	-		HMPREF1078_RS17040	0.13	+0.5
116,476	-		HMPREF1078_RS17040	0.15	+0.2
116,622	+		HMPREF1078_RS17040	0.22	+1.5
116,623	-		HMPREF1078_RS17040	0.22	-0.0
116,867	+		HMPREF1078_RS17040	0.33	+0.5
116,868	-		HMPREF1078_RS17040	0.33	+2.5
116,992	+		HMPREF1078_RS17040	0.39	+0.2
117,030	+		HMPREF1078_RS17040	0.41	-0.3
117,031	-		HMPREF1078_RS17040	0.41	+1.0
117,031	-		HMPREF1078_RS17040	0.41	+0.5
117,032	+		HMPREF1078_RS17040	0.41	+0.2
117,033	-		HMPREF1078_RS17040	0.41	+1.5
117,060	+		HMPREF1078_RS17040	0.42	+1.5
117,089	-		HMPREF1078_RS17040	0.43	+0.2
117,089	-		HMPREF1078_RS17040	0.43	-0.8
117,216	-		HMPREF1078_RS17040	0.49	-0.2
117,306	+		HMPREF1078_RS17040	0.53	+0.5
117,315	-		HMPREF1078_RS17040	0.54	-0.5
117,414	-		HMPREF1078_RS17040	0.58	+0.2
117,419	-		HMPREF1078_RS17040	0.58	-0.0
117,612	+		HMPREF1078_RS17040	0.67	+1.5
117,613	-		HMPREF1078_RS17040	0.67	-0.6
117,613	-		HMPREF1078_RS17040	0.67	-0.0
117,643	-		HMPREF1078_RS17040	0.69	+0.2
117,644	+		HMPREF1078_RS17040	0.69	+1.0
117,644	+		HMPREF1078_RS17040	0.69	+1.0
117,667	-		HMPREF1078_RS17040	0.70	+0.5
117,703	-		HMPREF1078_RS17040	0.71	-0.0
117,830	-		HMPREF1078_RS17040	0.77	-0.3
117,844	-		HMPREF1078_RS17040	0.78	+1.2
117,886	-		HMPREF1078_RS17040	0.80	-0.5
117,886	-		HMPREF1078_RS17040	0.80	+2.5
117,886	-		HMPREF1078_RS17040	0.80	+0.8
118,052	-		HMPREF1078_RS17040	0.87	-0.6
118,159	-				-1.4
118,159	-				+1.2
118,218	+				-0.3
118,219	-				+0.2
118,219	-				-1.3
118,219	-				+1.0
118,219	-				-0.9
118,327	-				+0.2
118,327	-				+0.1
118,330	-				-0.6
118,336	-				+0.9
118,341	-				+0.1
118,373	+				-0.3
118,405	-				-0.4
118,405	-				-1.2
118,453	-				+0.4
118,453	-				-0.5
118,453	-				+1.0
118,491	-		HMPREF1078_RS17045	0.11	-1.0
118,491	-		HMPREF1078_RS17045	0.11	-0.2
118,491	-		HMPREF1078_RS17045	0.11	+0.5
118,571	-		HMPREF1078_RS17045	0.18	-2.5
118,571	-		HMPREF1078_RS17045	0.18	-0.3
118,594	+		HMPREF1078_RS17045	0.20	+1.5
118,595	-		HMPREF1078_RS17045	0.20	+0.1
118,596	+		HMPREF1078_RS17045	0.20	+0.5
118,597	-		HMPREF1078_RS17045	0.20	-1.3
118,597	-		HMPREF1078_RS17045	0.20	-1.0
118,597	-		HMPREF1078_RS17045	0.20	-0.6
118,597	-		HMPREF1078_RS17045	0.20	-0.8
118,633	+		HMPREF1078_RS17045	0.23	-1.0
118,634	-		HMPREF1078_RS17045	0.23	-0.5
118,634	-		HMPREF1078_RS17045	0.23	-0.9
118,645	+		HMPREF1078_RS17045	0.24	+1.0
118,646	-		HMPREF1078_RS17045	0.24	-1.2
118,668	+		HMPREF1078_RS17045	0.26	+1.0
118,669	-		HMPREF1078_RS17045	0.26	-0.0
118,679	-		HMPREF1078_RS17045	0.27	-0.3
118,736	-		HMPREF1078_RS17045	0.31	+0.3
118,736	-		HMPREF1078_RS17045	0.31	-1.3
118,740	+		HMPREF1078_RS17045	0.32	-1.0
118,799	+		HMPREF1078_RS17045	0.36	+0.2
118,800	-		HMPREF1078_RS17045	0.36	+0.3
118,808	-		HMPREF1078_RS17045	0.37	-1.8
118,860	-		HMPREF1078_RS17045	0.41	-2.1
118,860	-		HMPREF1078_RS17045	0.41	+0.4
118,860	-		HMPREF1078_RS17045	0.41	-0.4
118,860	-		HMPREF1078_RS17045	0.41	-0.8
118,992	-		HMPREF1078_RS17045	0.52	+0.5
119,036	-		HMPREF1078_RS17045	0.56	-0.9
119,036	-		HMPREF1078_RS17045	0.56	+0.9
119,036	-		HMPREF1078_RS17045	0.56	+0.4
119,036	-		HMPREF1078_RS17045	0.56	-0.4
119,036	-		HMPREF1078_RS17045	0.56	+0.3
119,036	-		HMPREF1078_RS17045	0.56	+0.3
119,036	-		HMPREF1078_RS17045	0.56	-0.2
119,040	-		HMPREF1078_RS17045	0.56	+0.4
119,040	-		HMPREF1078_RS17045	0.56	+0.7
119,051	-		HMPREF1078_RS17045	0.57	-0.9
119,055	-		HMPREF1078_RS17045	0.57	+0.2
119,059	+		HMPREF1078_RS17045	0.57	+0.2
119,124	-		HMPREF1078_RS17045	0.63	+0.9
119,124	-		HMPREF1078_RS17045	0.63	-1.8
119,124	-		HMPREF1078_RS17045	0.63	-0.3
119,124	-		HMPREF1078_RS17045	0.63	-0.6
119,136	-		HMPREF1078_RS17045	0.64	-0.6
119,136	-		HMPREF1078_RS17045	0.64	+0.1
119,168	+		HMPREF1078_RS17045	0.66	+0.5
119,169	-		HMPREF1078_RS17045	0.66	-0.1
119,216	+		HMPREF1078_RS17045	0.70	+0.2
119,217	-		HMPREF1078_RS17045	0.70	-0.2
119,225	-		HMPREF1078_RS17045	0.71	-0.4
119,225	-		HMPREF1078_RS17045	0.71	-0.2
119,225	-		HMPREF1078_RS17045	0.71	-0.0
119,249	-		HMPREF1078_RS17045	0.73	+0.5
119,249	-		HMPREF1078_RS17045	0.73	-0.7
119,249	-		HMPREF1078_RS17045	0.73	-0.9
119,251	+		HMPREF1078_RS17045	0.73	+1.0
119,252	-		HMPREF1078_RS17045	0.73	-3.6
119,252	-		HMPREF1078_RS17045	0.73	+0.8
119,252	-		HMPREF1078_RS17045	0.73	+0.4
119,252	-		HMPREF1078_RS17045	0.73	+0.5
119,289	-		HMPREF1078_RS17045	0.76	+0.3
119,320	-		HMPREF1078_RS17045	0.79	-0.5
119,320	-		HMPREF1078_RS17045	0.79	+0.4
119,320	-		HMPREF1078_RS17045	0.79	-0.2
119,320	-		HMPREF1078_RS17045	0.79	-0.0
119,320	-		HMPREF1078_RS17045	0.79	-0.3
119,320	-		HMPREF1078_RS17045	0.79	+0.6