Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17005

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
106,658	-				-0.9
107,218	-				+1.5
107,221	-				+0.3
107,271	-				+0.5
107,277	-				+0.8
107,395	-				+0.2
107,518	-				+1.4
107,525	+				-0.3
107,526	-				-0.1
107,548	-				-0.2
107,744	+		HMPREF1078_RS17005	0.11	-0.3
107,744	+		HMPREF1078_RS17005	0.11	-0.5
107,745	-		HMPREF1078_RS17005	0.11	-0.0
107,842	-		HMPREF1078_RS17005	0.16	-0.5
107,842	-		HMPREF1078_RS17005	0.16	-0.3
107,849	-		HMPREF1078_RS17005	0.16	-0.5
107,915	-		HMPREF1078_RS17005	0.20	+1.5
107,997	+		HMPREF1078_RS17005	0.24	-2.1
107,998	-		HMPREF1078_RS17005	0.24	+0.1
107,998	-		HMPREF1078_RS17005	0.24	+2.1
107,998	-		HMPREF1078_RS17005	0.24	-0.3
108,068	+		HMPREF1078_RS17005	0.28	+1.0
108,069	-		HMPREF1078_RS17005	0.28	+0.2
108,076	-		HMPREF1078_RS17005	0.28	+0.5
108,085	+		HMPREF1078_RS17005	0.29	-1.4
108,085	+		HMPREF1078_RS17005	0.29	+2.0
108,087	+		HMPREF1078_RS17005	0.29	-0.0
108,088	-		HMPREF1078_RS17005	0.29	-0.7
108,088	-		HMPREF1078_RS17005	0.29	-1.7
108,094	-		HMPREF1078_RS17005	0.29	-0.9
108,163	+		HMPREF1078_RS17005	0.33	-0.5
108,163	+		HMPREF1078_RS17005	0.33	+0.6
108,224	-		HMPREF1078_RS17005	0.36	+0.2
108,252	+		HMPREF1078_RS17005	0.38	-1.8
108,286	-		HMPREF1078_RS17005	0.40	+0.4
108,286	-		HMPREF1078_RS17005	0.40	-1.0
108,307	+		HMPREF1078_RS17005	0.41	+1.0
108,340	+		HMPREF1078_RS17005	0.43	-0.0
108,343	-		HMPREF1078_RS17005	0.43	-1.9
108,369	+		HMPREF1078_RS17005	0.44	+1.0
108,369	+		HMPREF1078_RS17005	0.44	+0.5
108,370	-		HMPREF1078_RS17005	0.44	-0.8
108,380	-		HMPREF1078_RS17005	0.45	+1.5
108,382	-		HMPREF1078_RS17005	0.45	+0.2
108,527	+		HMPREF1078_RS17005	0.53	-1.4
108,528	-		HMPREF1078_RS17005	0.53	-0.3
108,528	-		HMPREF1078_RS17005	0.53	-1.2
108,528	-		HMPREF1078_RS17005	0.53	+0.2
108,548	-		HMPREF1078_RS17005	0.54	-0.0
108,548	-		HMPREF1078_RS17005	0.54	+0.5
108,557	-		HMPREF1078_RS17005	0.54	-0.0
108,562	-		HMPREF1078_RS17005	0.54	+0.1
108,597	+		HMPREF1078_RS17005	0.56	-1.0
108,625	-		HMPREF1078_RS17005	0.58	-0.3
108,661	-		HMPREF1078_RS17005	0.60	-1.5
108,774	+		HMPREF1078_RS17005	0.66	-0.9
108,776	+		HMPREF1078_RS17005	0.66	-0.5
108,777	-		HMPREF1078_RS17005	0.66	+0.7
108,777	-		HMPREF1078_RS17005	0.66	+2.5
108,777	-		HMPREF1078_RS17005	0.66	-0.1
108,777	-		HMPREF1078_RS17005	0.66	-2.1
108,788	-		HMPREF1078_RS17005	0.67	-0.4
108,788	-		HMPREF1078_RS17005	0.67	-1.5
108,840	+		HMPREF1078_RS17005	0.69	+2.8
108,953	-		HMPREF1078_RS17005	0.75	+1.3
109,100	+		HMPREF1078_RS17005	0.83	-1.4
109,135	+		HMPREF1078_RS17005	0.85	-0.8
109,135	+		HMPREF1078_RS17005	0.85	-0.3
109,136	-		HMPREF1078_RS17005	0.85	+0.2
109,219	+		HMPREF1078_RS17005	0.90	-1.0
109,220	-		HMPREF1078_RS17005	0.90	-0.3
109,253	-				+0.5
109,253	-				+1.0
109,270	+				+2.2
109,271	-				-0.5
109,314	-				+1.5
109,314	-				-1.3
109,326	-				-1.6
109,378	+				-1.0
109,402	+				+0.2
109,402	+				-0.0
109,412	+				-0.6
109,413	-				+4.1
109,413	-				+0.2
109,413	-				-0.9
109,413	-				-0.1
109,416	+				-1.2
109,425	-				-0.3
109,435	-				+0.1
109,476	+		HMPREF1078_RS17010	0.21	+0.5
109,476	+		HMPREF1078_RS17010	0.21	-1.5
109,476	+		HMPREF1078_RS17010	0.21	+0.3
109,476	+		HMPREF1078_RS17010	0.21	+0.3
109,477	-		HMPREF1078_RS17010	0.21	-0.2
109,477	-		HMPREF1078_RS17010	0.21	-1.1
109,477	-		HMPREF1078_RS17010	0.21	+0.0
109,478	+		HMPREF1078_RS17010	0.22	-1.8
109,478	+		HMPREF1078_RS17010	0.22	-1.9
109,479	-		HMPREF1078_RS17010	0.22	-0.6
109,479	-		HMPREF1078_RS17010	0.22	-0.1
109,549	-		HMPREF1078_RS17010	0.45	-0.7
109,549	-		HMPREF1078_RS17010	0.45	-0.8
109,567	-		HMPREF1078_RS17010	0.50	-3.0
109,567	-		HMPREF1078_RS17010	0.50	+0.5
109,569	-		HMPREF1078_RS17010	0.51	-0.9
109,569	-		HMPREF1078_RS17010	0.51	-0.1
109,569	-		HMPREF1078_RS17010	0.51	-0.6
109,569	-		HMPREF1078_RS17010	0.51	+0.1
109,569	-		HMPREF1078_RS17010	0.51	-0.3
109,644	+		HMPREF1078_RS17010	0.75	-0.0
109,658	+		HMPREF1078_RS17010	0.80	-1.5
109,659	-		HMPREF1078_RS17010	0.80	-1.2
109,659	-		HMPREF1078_RS17010	0.80	-0.7
109,659	-		HMPREF1078_RS17010	0.80	+0.2
109,669	-		HMPREF1078_RS17010	0.83	-0.2
109,699	-				+0.3
109,700	+				-0.9
109,701	-				+0.6
109,712	-				-0.5
109,712	-				+0.0