Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16225 and HMPREF1078_RS18970 are separated by 101 nucleotides HMPREF1078_RS18970 and HMPREF1078_RS16230 are separated by 153 nucleotides HMPREF1078_RS16230 and HMPREF1078_RS16235 overlap by 14 nucleotides HMPREF1078_RS16235 and HMPREF1078_RS16240 are separated by 114 nucleotides
HMPREF1078_RS16225: HMPREF1078_RS16225 - DUF3276 family protein, at 369,694 to 370,056
_RS16225
HMPREF1078_RS18970: HMPREF1078_RS18970 - 4Fe-4S binding protein, at 370,158 to 370,328
_RS18970
HMPREF1078_RS16230: HMPREF1078_RS16230 - porin family protein, at 370,482 to 371,216
_RS16230
HMPREF1078_RS16235: HMPREF1078_RS16235 - phosphatidate cytidylyltransferase, at 371,203 to 372,036
_RS16235
HMPREF1078_RS16240: HMPREF1078_RS16240 - ATP-dependent zinc metalloprotease FtsH, at 372,151 to 374,145
_RS16240
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.552 kb on - strand at 369.560 kb on + strand at 369.567 kb on + strand at 369.568 kb on - strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.591 kb on - strand at 369.593 kb on - strand at 369.641 kb on + strand at 369.641 kb on + strand at 369.655 kb on + strand at 369.656 kb on - strand at 369.690 kb on + strand at 369.690 kb on + strand at 369.717 kb on - strand at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.748 kb on + strand, within HMPREF1078_RS16225 at 369.748 kb on + strand, within HMPREF1078_RS16225 at 369.749 kb on - strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.754 kb on - strand, within HMPREF1078_RS16225 at 369.762 kb on + strand, within HMPREF1078_RS16225 at 369.782 kb on - strand, within HMPREF1078_RS16225 at 369.785 kb on - strand, within HMPREF1078_RS16225 at 369.794 kb on + strand, within HMPREF1078_RS16225 at 369.794 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.865 kb on - strand, within HMPREF1078_RS16225 at 369.888 kb on + strand, within HMPREF1078_RS16225 at 369.888 kb on + strand, within HMPREF1078_RS16225 at 369.889 kb on - strand, within HMPREF1078_RS16225 at 369.902 kb on - strand, within HMPREF1078_RS16225 at 369.902 kb on - strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.952 kb on + strand, within HMPREF1078_RS16225 at 369.952 kb on + strand, within HMPREF1078_RS16225 at 369.957 kb on + strand, within HMPREF1078_RS16225 at 369.957 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 370.042 kb on - strand at 370.044 kb on + strand at 370.081 kb on + strand at 370.082 kb on - strand at 370.085 kb on - strand at 370.085 kb on - strand at 370.115 kb on + strand at 370.115 kb on + strand at 370.116 kb on - strand at 370.122 kb on - strand at 370.124 kb on - strand at 370.143 kb on + strand at 370.144 kb on - strand at 370.355 kb on - strand at 370.358 kb on - strand at 370.358 kb on - strand at 370.358 kb on - strand at 370.420 kb on + strand at 370.421 kb on - strand at 370.421 kb on - strand at 370.458 kb on - strand at 370.471 kb on + strand at 370.492 kb on + strand at 370.492 kb on + strand at 370.495 kb on + strand at 370.496 kb on - strand at 370.500 kb on - strand at 370.500 kb on - strand at 370.500 kb on - strand at 370.502 kb on + strand at 370.503 kb on - strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.505 kb on - strand at 370.505 kb on - strand at 370.505 kb on - strand at 370.535 kb on - strand at 370.570 kb on - strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.631 kb on - strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.638 kb on - strand, within HMPREF1078_RS16230 at 370.641 kb on - strand, within HMPREF1078_RS16230 at 370.671 kb on + strand, within HMPREF1078_RS16230 at 370.703 kb on + strand, within HMPREF1078_RS16230 at 370.724 kb on + strand, within HMPREF1078_RS16230 at 370.724 kb on + strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.846 kb on + strand, within HMPREF1078_RS16230 at 370.847 kb on - strand, within HMPREF1078_RS16230 at 370.854 kb on + strand, within HMPREF1078_RS16230 at 370.854 kb on + strand, within HMPREF1078_RS16230 at 370.855 kb on - strand, within HMPREF1078_RS16230 at 370.878 kb on + strand, within HMPREF1078_RS16230 at 370.879 kb on - strand, within HMPREF1078_RS16230 at 370.879 kb on - strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.906 kb on - strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.926 kb on - strand, within HMPREF1078_RS16230 at 370.926 kb on - strand, within HMPREF1078_RS16230 at 370.929 kb on + strand, within HMPREF1078_RS16230 at 370.930 kb on - strand, within HMPREF1078_RS16230 at 370.939 kb on - strand, within HMPREF1078_RS16230 at 370.939 kb on - strand, within HMPREF1078_RS16230 at 370.956 kb on + strand, within HMPREF1078_RS16230 at 370.957 kb on - strand, within HMPREF1078_RS16230 at 370.957 kb on - strand, within HMPREF1078_RS16230 at 371.049 kb on + strand, within HMPREF1078_RS16230 at 371.050 kb on - strand, within HMPREF1078_RS16230 at 371.069 kb on - strand, within HMPREF1078_RS16230 at 371.081 kb on + strand, within HMPREF1078_RS16230 at 371.082 kb on - strand, within HMPREF1078_RS16230 at 371.088 kb on - strand, within HMPREF1078_RS16230 at 371.101 kb on + strand, within HMPREF1078_RS16230 at 371.205 kb on - strand at 372.070 kb on - strand at 372.076 kb on - strand at 372.076 kb on - strand at 372.076 kb on - strand at 372.082 kb on - strand at 372.082 kb on - strand at 372.143 kb on - strand at 372.152 kb on + strand at 372.152 kb on + strand at 372.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 369,552 - +1.5 369,560 + +0.9 369,567 + -0.8 369,568 - +0.1 369,590 + -1.1 369,590 + +0.1 369,590 + +1.0 369,590 + +0.0 369,590 + +0.5 369,591 - +0.1 369,593 - +0.5 369,641 + +0.6 369,641 + +0.1 369,655 + +0.3 369,656 - -1.5 369,690 + -1.0 369,690 + +1.3 369,717 - +0.5 369,746 + HMPREF1078_RS16225 0.14 -0.3 369,746 + HMPREF1078_RS16225 0.14 -1.2 369,746 + HMPREF1078_RS16225 0.14 -1.8 369,746 + HMPREF1078_RS16225 0.14 -0.8 369,747 - HMPREF1078_RS16225 0.15 +0.5 369,747 - HMPREF1078_RS16225 0.15 -0.1 369,747 - HMPREF1078_RS16225 0.15 -0.1 369,747 - HMPREF1078_RS16225 0.15 +0.0 369,748 + HMPREF1078_RS16225 0.15 +0.7 369,748 + HMPREF1078_RS16225 0.15 -0.4 369,749 - HMPREF1078_RS16225 0.15 -0.0 369,753 + HMPREF1078_RS16225 0.16 +0.9 369,753 + HMPREF1078_RS16225 0.16 +0.4 369,753 + HMPREF1078_RS16225 0.16 +0.5 369,754 - HMPREF1078_RS16225 0.17 +0.4 369,762 + HMPREF1078_RS16225 0.19 -0.8 369,782 - HMPREF1078_RS16225 0.24 -0.7 369,785 - HMPREF1078_RS16225 0.25 +0.1 369,794 + HMPREF1078_RS16225 0.28 -1.9 369,794 + HMPREF1078_RS16225 0.28 +1.3 369,864 + HMPREF1078_RS16225 0.47 -0.4 369,864 + HMPREF1078_RS16225 0.47 +0.9 369,864 + HMPREF1078_RS16225 0.47 +0.0 369,865 - HMPREF1078_RS16225 0.47 -0.2 369,888 + HMPREF1078_RS16225 0.53 -0.3 369,888 + HMPREF1078_RS16225 0.53 +0.2 369,889 - HMPREF1078_RS16225 0.54 -0.9 369,902 - HMPREF1078_RS16225 0.57 +0.5 369,902 - HMPREF1078_RS16225 0.57 +0.7 369,944 + HMPREF1078_RS16225 0.69 +0.5 369,944 + HMPREF1078_RS16225 0.69 +0.5 369,944 + HMPREF1078_RS16225 0.69 -0.2 369,944 + HMPREF1078_RS16225 0.69 -1.0 369,945 - HMPREF1078_RS16225 0.69 +0.5 369,945 - HMPREF1078_RS16225 0.69 -0.4 369,945 - HMPREF1078_RS16225 0.69 +0.7 369,945 - HMPREF1078_RS16225 0.69 +0.4 369,952 + HMPREF1078_RS16225 0.71 -0.2 369,952 + HMPREF1078_RS16225 0.71 -1.0 369,957 + HMPREF1078_RS16225 0.72 -0.4 369,957 + HMPREF1078_RS16225 0.72 +0.7 369,966 + HMPREF1078_RS16225 0.75 -1.8 369,966 + HMPREF1078_RS16225 0.75 -1.0 369,966 + HMPREF1078_RS16225 0.75 -0.3 369,966 + HMPREF1078_RS16225 0.75 -0.8 370,042 - -0.8 370,044 + -0.1 370,081 + -1.7 370,082 - -0.3 370,085 - -0.0 370,085 - +0.9 370,115 + -1.3 370,115 + +0.7 370,116 - -0.8 370,122 - -0.7 370,124 - +0.0 370,143 + +2.5 370,144 - +2.1 370,355 - +0.9 370,358 - +1.5 370,358 - -0.3 370,358 - -1.7 370,420 + +0.9 370,421 - +0.4 370,421 - -0.9 370,458 - +0.0 370,471 + +0.5 370,492 + +0.7 370,492 + +1.5 370,495 + -0.3 370,496 - +0.5 370,500 - -2.3 370,500 - +0.5 370,500 - -2.1 370,502 + +2.5 370,503 - +1.5 370,504 + -0.1 370,504 + -0.8 370,504 + -1.2 370,504 + -0.3 370,505 - +1.0 370,505 - -0.1 370,505 - +0.2 370,535 - +0.2 370,570 - HMPREF1078_RS16230 0.12 -0.7 370,606 + HMPREF1078_RS16230 0.17 -0.8 370,606 + HMPREF1078_RS16230 0.17 -0.1 370,606 + HMPREF1078_RS16230 0.17 -0.8 370,606 + HMPREF1078_RS16230 0.17 -1.6 370,631 - HMPREF1078_RS16230 0.20 +0.2 370,637 + HMPREF1078_RS16230 0.21 +1.3 370,637 + HMPREF1078_RS16230 0.21 -0.3 370,637 + HMPREF1078_RS16230 0.21 +0.2 370,637 + HMPREF1078_RS16230 0.21 +1.5 370,637 + HMPREF1078_RS16230 0.21 +1.5 370,638 - HMPREF1078_RS16230 0.21 +1.3 370,641 - HMPREF1078_RS16230 0.22 -0.7 370,671 + HMPREF1078_RS16230 0.26 +1.5 370,703 + HMPREF1078_RS16230 0.30 -0.8 370,724 + HMPREF1078_RS16230 0.33 +0.9 370,724 + HMPREF1078_RS16230 0.33 -0.4 370,725 - HMPREF1078_RS16230 0.33 +0.5 370,725 - HMPREF1078_RS16230 0.33 +0.2 370,725 - HMPREF1078_RS16230 0.33 -0.1 370,728 + HMPREF1078_RS16230 0.33 +0.0 370,728 + HMPREF1078_RS16230 0.33 +0.5 370,728 + HMPREF1078_RS16230 0.33 -2.0 370,729 - HMPREF1078_RS16230 0.34 +0.5 370,729 - HMPREF1078_RS16230 0.34 -0.3 370,729 - HMPREF1078_RS16230 0.34 +2.5 370,846 + HMPREF1078_RS16230 0.50 -1.0 370,847 - HMPREF1078_RS16230 0.50 +0.9 370,854 + HMPREF1078_RS16230 0.51 -1.8 370,854 + HMPREF1078_RS16230 0.51 +2.5 370,855 - HMPREF1078_RS16230 0.51 -0.1 370,878 + HMPREF1078_RS16230 0.54 +0.2 370,879 - HMPREF1078_RS16230 0.54 -2.2 370,879 - HMPREF1078_RS16230 0.54 -0.3 370,905 + HMPREF1078_RS16230 0.58 -1.7 370,905 + HMPREF1078_RS16230 0.58 -0.1 370,905 + HMPREF1078_RS16230 0.58 +1.5 370,906 - HMPREF1078_RS16230 0.58 +0.2 370,925 + HMPREF1078_RS16230 0.60 +0.2 370,925 + HMPREF1078_RS16230 0.60 +0.9 370,925 + HMPREF1078_RS16230 0.60 +1.3 370,926 - HMPREF1078_RS16230 0.60 -1.0 370,926 - HMPREF1078_RS16230 0.60 -0.5 370,929 + HMPREF1078_RS16230 0.61 -2.3 370,930 - HMPREF1078_RS16230 0.61 +2.5 370,939 - HMPREF1078_RS16230 0.62 +0.2 370,939 - HMPREF1078_RS16230 0.62 -1.5 370,956 + HMPREF1078_RS16230 0.64 +1.3 370,957 - HMPREF1078_RS16230 0.65 +0.5 370,957 - HMPREF1078_RS16230 0.65 +0.2 371,049 + HMPREF1078_RS16230 0.77 +1.5 371,050 - HMPREF1078_RS16230 0.77 -1.2 371,069 - HMPREF1078_RS16230 0.80 -0.7 371,081 + HMPREF1078_RS16230 0.81 -0.1 371,082 - HMPREF1078_RS16230 0.82 -0.7 371,088 - HMPREF1078_RS16230 0.82 +0.5 371,101 + HMPREF1078_RS16230 0.84 +1.5 371,205 - -1.5 372,070 - -0.2 372,076 - -1.5 372,076 - +1.3 372,076 - -0.5 372,082 - -0.9 372,082 - +0.7 372,143 - -0.2 372,152 + +1.3 372,152 + +0.3 372,153 - -0.5
Or see this region's nucleotide sequence