Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16170 and HMPREF1078_RS16175 are separated by 195 nucleotides HMPREF1078_RS16175 and HMPREF1078_RS16180 overlap by 16 nucleotides HMPREF1078_RS16180 and HMPREF1078_RS16185 are separated by 128 nucleotides
HMPREF1078_RS16170: HMPREF1078_RS16170 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 358,746 to 359,933
_RS16170
HMPREF1078_RS16175: HMPREF1078_RS16175 - diacylglycerol kinase family lipid kinase, at 360,129 to 361,100
_RS16175
HMPREF1078_RS16180: HMPREF1078_RS16180 - methyltransferase, at 361,085 to 361,801
_RS16180
HMPREF1078_RS16185: HMPREF1078_RS16185 - endopeptidase La, at 361,930 to 364,392
_RS16185
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.004 kb on - strand at 360.118 kb on + strand at 360.149 kb on + strand at 360.149 kb on + strand at 360.149 kb on + strand at 360.161 kb on + strand at 360.454 kb on + strand, within HMPREF1078_RS16175 at 360.454 kb on + strand, within HMPREF1078_RS16175 at 360.613 kb on + strand, within HMPREF1078_RS16175 at 360.674 kb on + strand, within HMPREF1078_RS16175 at 360.730 kb on - strand, within HMPREF1078_RS16175 at 360.735 kb on - strand, within HMPREF1078_RS16175 at 361.000 kb on + strand, within HMPREF1078_RS16175 at 361.086 kb on + strand at 361.087 kb on - strand at 361.087 kb on - strand at 361.120 kb on + strand at 361.120 kb on + strand at 361.121 kb on - strand at 361.122 kb on + strand at 361.122 kb on + strand at 361.123 kb on - strand at 361.132 kb on + strand at 361.271 kb on + strand, within HMPREF1078_RS16180 at 361.288 kb on + strand, within HMPREF1078_RS16180 at 361.289 kb on - strand, within HMPREF1078_RS16180 at 361.289 kb on - strand, within HMPREF1078_RS16180 at 361.289 kb on - strand, within HMPREF1078_RS16180 at 361.318 kb on - strand, within HMPREF1078_RS16180 at 361.336 kb on + strand, within HMPREF1078_RS16180 at 361.336 kb on + strand, within HMPREF1078_RS16180 at 361.336 kb on + strand, within HMPREF1078_RS16180 at 361.336 kb on + strand, within HMPREF1078_RS16180 at 361.337 kb on - strand, within HMPREF1078_RS16180 at 361.369 kb on - strand, within HMPREF1078_RS16180 at 361.386 kb on - strand, within HMPREF1078_RS16180 at 361.425 kb on - strand, within HMPREF1078_RS16180 at 361.455 kb on + strand, within HMPREF1078_RS16180 at 361.482 kb on + strand, within HMPREF1078_RS16180 at 361.484 kb on + strand, within HMPREF1078_RS16180 at 361.484 kb on + strand, within HMPREF1078_RS16180 at 361.485 kb on - strand, within HMPREF1078_RS16180 at 361.485 kb on - strand, within HMPREF1078_RS16180 at 361.485 kb on - strand, within HMPREF1078_RS16180 at 361.535 kb on + strand, within HMPREF1078_RS16180 at 361.680 kb on - strand, within HMPREF1078_RS16180 at 361.737 kb on - strand at 361.754 kb on - strand at 361.763 kb on + strand at 361.763 kb on + strand at 361.768 kb on + strand at 361.805 kb on - strand at 361.874 kb on + strand at 361.928 kb on - strand at 361.928 kb on - strand at 361.928 kb on - strand at 361.928 kb on - strand at 361.929 kb on + strand at 361.929 kb on + strand at 361.942 kb on - strand at 361.946 kb on + strand at 361.970 kb on - strand at 361.970 kb on - strand at 361.970 kb on - strand at 361.986 kb on + strand at 361.989 kb on + strand at 361.990 kb on - strand at 361.990 kb on - strand at 361.990 kb on - strand at 362.000 kb on + strand at 362.007 kb on + strand at 362.095 kb on - strand at 362.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 360,004 - +0.2 360,118 + -1.5 360,149 + -0.0 360,149 + -2.1 360,149 + -0.7 360,161 + +1.5 360,454 + HMPREF1078_RS16175 0.33 +0.1 360,454 + HMPREF1078_RS16175 0.33 -1.4 360,613 + HMPREF1078_RS16175 0.50 -2.9 360,674 + HMPREF1078_RS16175 0.56 -0.3 360,730 - HMPREF1078_RS16175 0.62 +0.5 360,735 - HMPREF1078_RS16175 0.62 +0.2 361,000 + HMPREF1078_RS16175 0.90 -0.5 361,086 + -2.4 361,087 - -0.5 361,087 - -0.7 361,120 + +1.3 361,120 + -1.2 361,121 - -1.0 361,122 + -2.8 361,122 + -1.9 361,123 - +0.5 361,132 + +0.2 361,271 + HMPREF1078_RS16180 0.26 -0.3 361,288 + HMPREF1078_RS16180 0.28 -0.3 361,289 - HMPREF1078_RS16180 0.28 -0.6 361,289 - HMPREF1078_RS16180 0.28 +1.0 361,289 - HMPREF1078_RS16180 0.28 +1.4 361,318 - HMPREF1078_RS16180 0.32 +0.5 361,336 + HMPREF1078_RS16180 0.35 -0.7 361,336 + HMPREF1078_RS16180 0.35 +0.3 361,336 + HMPREF1078_RS16180 0.35 -1.9 361,336 + HMPREF1078_RS16180 0.35 -0.1 361,337 - HMPREF1078_RS16180 0.35 -0.6 361,369 - HMPREF1078_RS16180 0.40 -0.5 361,386 - HMPREF1078_RS16180 0.42 +2.1 361,425 - HMPREF1078_RS16180 0.47 -1.3 361,455 + HMPREF1078_RS16180 0.52 +0.8 361,482 + HMPREF1078_RS16180 0.55 +0.8 361,484 + HMPREF1078_RS16180 0.56 +0.7 361,484 + HMPREF1078_RS16180 0.56 -1.6 361,485 - HMPREF1078_RS16180 0.56 -0.5 361,485 - HMPREF1078_RS16180 0.56 +0.2 361,485 - HMPREF1078_RS16180 0.56 +0.9 361,535 + HMPREF1078_RS16180 0.63 -0.1 361,680 - HMPREF1078_RS16180 0.83 -1.0 361,737 - -0.2 361,754 - +0.5 361,763 + +0.8 361,763 + -1.2 361,768 + +1.9 361,805 - -0.3 361,874 + -2.8 361,928 - +0.8 361,928 - -0.1 361,928 - +2.0 361,928 - -0.7 361,929 + -1.6 361,929 + -0.8 361,942 - +1.3 361,946 + +0.9 361,970 - +0.2 361,970 - -1.4 361,970 - -0.7 361,986 + +0.4 361,989 + +0.1 361,990 - +0.1 361,990 - -2.3 361,990 - +1.2 362,000 + -0.7 362,007 + -0.1 362,095 - +0.7 362,099 + +0.8
Or see this region's nucleotide sequence