Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16155 and HMPREF1078_RS16160 are separated by 13 nucleotides HMPREF1078_RS16160 and HMPREF1078_RS16165 overlap by 74 nucleotides
HMPREF1078_RS16155: HMPREF1078_RS16155 - rod shape-determining protein RodA, at 355,215 to 356,699
_RS16155
HMPREF1078_RS16160: HMPREF1078_RS16160 - gliding motility lipoprotein GldH, at 356,713 to 357,237
_RS16160
HMPREF1078_RS16165: HMPREF1078_RS16165 - regulatory iron-sulfur-containing complex subunit RicT, at 357,164 to 358,591
_RS16165
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 356.698 kb on - strand at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.798 kb on + strand, within HMPREF1078_RS16160 at 356.799 kb on - strand, within HMPREF1078_RS16160 at 356.820 kb on + strand, within HMPREF1078_RS16160 at 356.821 kb on - strand, within HMPREF1078_RS16160 at 356.822 kb on + strand, within HMPREF1078_RS16160 at 356.822 kb on + strand, within HMPREF1078_RS16160 at 356.852 kb on + strand, within HMPREF1078_RS16160 at 356.962 kb on + strand, within HMPREF1078_RS16160 at 356.972 kb on + strand, within HMPREF1078_RS16160 at 356.979 kb on - strand, within HMPREF1078_RS16160 at 356.986 kb on - strand, within HMPREF1078_RS16160 at 356.986 kb on - strand, within HMPREF1078_RS16160 at 356.995 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.050 kb on + strand, within HMPREF1078_RS16160 at 357.050 kb on + strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.053 kb on + strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.104 kb on + strand, within HMPREF1078_RS16160 at 357.104 kb on + strand, within HMPREF1078_RS16160 at 357.105 kb on - strand, within HMPREF1078_RS16160 at 357.214 kb on + strand at 357.215 kb on - strand at 357.251 kb on - strand at 357.260 kb on + strand at 357.712 kb on - strand, within HMPREF1078_RS16165 at 357.712 kb on - strand, within HMPREF1078_RS16165 at 357.734 kb on - strand, within HMPREF1078_RS16165 at 357.751 kb on - strand, within HMPREF1078_RS16165 at 357.753 kb on + strand, within HMPREF1078_RS16165 at 357.753 kb on + strand, within HMPREF1078_RS16165 at 357.754 kb on - strand, within HMPREF1078_RS16165 at 357.754 kb on - strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.831 kb on + strand, within HMPREF1078_RS16165 at 357.832 kb on - strand, within HMPREF1078_RS16165 at 357.832 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.893 kb on - strand, within HMPREF1078_RS16165 at 357.921 kb on - strand, within HMPREF1078_RS16165 at 357.927 kb on - strand, within HMPREF1078_RS16165 at 357.927 kb on - strand, within HMPREF1078_RS16165 at 358.228 kb on - strand, within HMPREF1078_RS16165
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 356,698 - -2.0 356,796 + HMPREF1078_RS16160 0.16 -0.2 356,796 + HMPREF1078_RS16160 0.16 -2.0 356,796 + HMPREF1078_RS16160 0.16 -1.0 356,796 + HMPREF1078_RS16160 0.16 -0.3 356,796 + HMPREF1078_RS16160 0.16 -0.0 356,796 + HMPREF1078_RS16160 0.16 +0.5 356,797 - HMPREF1078_RS16160 0.16 -0.6 356,797 - HMPREF1078_RS16160 0.16 -3.7 356,797 - HMPREF1078_RS16160 0.16 -1.1 356,797 - HMPREF1078_RS16160 0.16 -0.7 356,797 - HMPREF1078_RS16160 0.16 -0.7 356,797 - HMPREF1078_RS16160 0.16 -0.6 356,798 + HMPREF1078_RS16160 0.16 -1.4 356,799 - HMPREF1078_RS16160 0.16 +0.7 356,820 + HMPREF1078_RS16160 0.20 -0.2 356,821 - HMPREF1078_RS16160 0.21 -3.2 356,822 + HMPREF1078_RS16160 0.21 -0.4 356,822 + HMPREF1078_RS16160 0.21 -2.4 356,852 + HMPREF1078_RS16160 0.26 -1.4 356,962 + HMPREF1078_RS16160 0.47 -0.0 356,972 + HMPREF1078_RS16160 0.49 +0.1 356,979 - HMPREF1078_RS16160 0.51 -0.8 356,986 - HMPREF1078_RS16160 0.52 -1.5 356,986 - HMPREF1078_RS16160 0.52 -1.2 356,995 + HMPREF1078_RS16160 0.54 -0.9 357,025 + HMPREF1078_RS16160 0.59 -1.2 357,025 + HMPREF1078_RS16160 0.59 -1.4 357,025 + HMPREF1078_RS16160 0.59 -0.1 357,025 + HMPREF1078_RS16160 0.59 -1.1 357,026 - HMPREF1078_RS16160 0.60 -0.9 357,026 - HMPREF1078_RS16160 0.60 -0.3 357,026 - HMPREF1078_RS16160 0.60 -2.5 357,026 - HMPREF1078_RS16160 0.60 -2.5 357,027 + HMPREF1078_RS16160 0.60 +0.2 357,027 + HMPREF1078_RS16160 0.60 -1.0 357,027 + HMPREF1078_RS16160 0.60 -0.5 357,028 - HMPREF1078_RS16160 0.60 -0.2 357,028 - HMPREF1078_RS16160 0.60 +0.1 357,028 - HMPREF1078_RS16160 0.60 +0.3 357,028 - HMPREF1078_RS16160 0.60 -0.2 357,028 - HMPREF1078_RS16160 0.60 -1.6 357,028 - HMPREF1078_RS16160 0.60 -1.3 357,050 + HMPREF1078_RS16160 0.64 -2.3 357,050 + HMPREF1078_RS16160 0.64 +1.2 357,051 - HMPREF1078_RS16160 0.64 +0.5 357,051 - HMPREF1078_RS16160 0.64 -3.5 357,051 - HMPREF1078_RS16160 0.64 -2.0 357,053 + HMPREF1078_RS16160 0.65 +0.6 357,054 - HMPREF1078_RS16160 0.65 -0.5 357,054 - HMPREF1078_RS16160 0.65 -1.7 357,054 - HMPREF1078_RS16160 0.65 -2.2 357,104 + HMPREF1078_RS16160 0.74 -1.8 357,104 + HMPREF1078_RS16160 0.74 -0.8 357,105 - HMPREF1078_RS16160 0.75 +0.6 357,214 + -0.7 357,215 - -0.0 357,251 - -2.1 357,260 + -0.1 357,712 - HMPREF1078_RS16165 0.38 -1.2 357,712 - HMPREF1078_RS16165 0.38 +0.0 357,734 - HMPREF1078_RS16165 0.40 -1.3 357,751 - HMPREF1078_RS16165 0.41 -1.3 357,753 + HMPREF1078_RS16165 0.41 -2.8 357,753 + HMPREF1078_RS16165 0.41 -1.3 357,754 - HMPREF1078_RS16165 0.41 -0.1 357,754 - HMPREF1078_RS16165 0.41 -0.2 357,757 + HMPREF1078_RS16165 0.42 -1.2 357,757 + HMPREF1078_RS16165 0.42 -0.7 357,757 + HMPREF1078_RS16165 0.42 -1.7 357,757 + HMPREF1078_RS16165 0.42 -1.5 357,758 - HMPREF1078_RS16165 0.42 -1.3 357,758 - HMPREF1078_RS16165 0.42 -1.1 357,758 - HMPREF1078_RS16165 0.42 -1.8 357,758 - HMPREF1078_RS16165 0.42 -0.2 357,817 - HMPREF1078_RS16165 0.46 -1.5 357,817 - HMPREF1078_RS16165 0.46 -0.0 357,817 - HMPREF1078_RS16165 0.46 -1.9 357,831 + HMPREF1078_RS16165 0.47 -0.1 357,832 - HMPREF1078_RS16165 0.47 +0.0 357,832 - HMPREF1078_RS16165 0.47 -1.9 357,891 - HMPREF1078_RS16165 0.51 -0.8 357,891 - HMPREF1078_RS16165 0.51 -0.7 357,891 - HMPREF1078_RS16165 0.51 -1.0 357,893 - HMPREF1078_RS16165 0.51 +0.7 357,921 - HMPREF1078_RS16165 0.53 +0.2 357,927 - HMPREF1078_RS16165 0.53 -0.8 357,927 - HMPREF1078_RS16165 0.53 -1.4 358,228 - HMPREF1078_RS16165 0.75 -1.6
Or see this region's nucleotide sequence