Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15320 and HMPREF1078_RS15325 are separated by 751 nucleotides HMPREF1078_RS15325 and HMPREF1078_RS15330 are separated by 181 nucleotides HMPREF1078_RS15330 and HMPREF1078_RS15335 are separated by 77 nucleotides
HMPREF1078_RS15320: HMPREF1078_RS15320 - tetratricopeptide repeat protein, at 149,411 to 150,946
_RS15320
HMPREF1078_RS15325: HMPREF1078_RS15325 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 151,698 to 153,209
_RS15325
HMPREF1078_RS15330: HMPREF1078_RS15330 - tRNA-Gly, at 153,391 to 153,463
_RS15330
HMPREF1078_RS15335: HMPREF1078_RS15335 - acetylglutamate kinase, at 153,541 to 154,308
_RS15335
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.706 kb on + strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.708 kb on + strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.748 kb on - strand, within HMPREF1078_RS15320 at 150.797 kb on + strand at 150.851 kb on + strand at 150.851 kb on + strand at 150.855 kb on - strand at 150.922 kb on + strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.925 kb on + strand at 150.925 kb on + strand at 150.930 kb on - strand at 150.940 kb on + strand at 150.959 kb on + strand at 150.977 kb on + strand at 150.978 kb on - strand at 151.036 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.192 kb on - strand at 151.402 kb on + strand at 151.402 kb on + strand at 151.413 kb on + strand at 151.433 kb on + strand at 151.454 kb on - strand at 151.464 kb on - strand at 151.493 kb on - strand at 151.578 kb on + strand at 151.638 kb on + strand at 151.658 kb on + strand at 151.659 kb on - strand at 151.686 kb on - strand at 151.731 kb on - strand at 151.839 kb on + strand at 151.860 kb on + strand, within HMPREF1078_RS15325 at 151.861 kb on - strand, within HMPREF1078_RS15325 at 151.868 kb on + strand, within HMPREF1078_RS15325 at 151.930 kb on + strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.961 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on - strand, within HMPREF1078_RS15325 at 152.115 kb on + strand, within HMPREF1078_RS15325 at 152.123 kb on + strand, within HMPREF1078_RS15325 at 152.179 kb on - strand, within HMPREF1078_RS15325 at 152.188 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.409 kb on + strand, within HMPREF1078_RS15325 at 152.474 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.560 kb on - strand, within HMPREF1078_RS15325 at 152.587 kb on - strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.773 kb on - strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.063 kb on - strand at 153.102 kb on - strand at 153.106 kb on - strand at 153.124 kb on - strand at 153.161 kb on + strand at 153.163 kb on + strand at 153.164 kb on - strand at 153.164 kb on - strand at 153.168 kb on - strand at 153.185 kb on + strand at 153.186 kb on - strand at 153.199 kb on - strand at 153.199 kb on - strand at 153.204 kb on + strand at 153.209 kb on + strand at 153.210 kb on - strand at 153.210 kb on - strand at 153.214 kb on - strand at 153.214 kb on - strand at 153.241 kb on - strand at 153.248 kb on + strand at 153.249 kb on - strand at 153.257 kb on + strand at 153.287 kb on - strand at 153.320 kb on - strand at 153.443 kb on + strand, within HMPREF1078_RS15330 at 153.458 kb on + strand at 153.534 kb on + strand at 153.536 kb on + strand at 153.537 kb on - strand at 153.537 kb on - strand at 153.552 kb on - strand at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.639 kb on + strand, within HMPREF1078_RS15335 at 153.640 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.812 kb on + strand, within HMPREF1078_RS15335 at 153.817 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.957 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.011 kb on + strand, within HMPREF1078_RS15335 at 154.145 kb on + strand, within HMPREF1078_RS15335 at 154.153 kb on - strand, within HMPREF1078_RS15335 at 154.169 kb on - strand, within HMPREF1078_RS15335 at 154.207 kb on - strand, within HMPREF1078_RS15335
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 150,706 + HMPREF1078_RS15320 0.84 -2.2 150,707 - HMPREF1078_RS15320 0.84 -1.1 150,707 - HMPREF1078_RS15320 0.84 +0.6 150,708 + HMPREF1078_RS15320 0.84 +0.8 150,709 - HMPREF1078_RS15320 0.85 +0.2 150,709 - HMPREF1078_RS15320 0.85 -0.2 150,744 - HMPREF1078_RS15320 0.87 +0.2 150,744 - HMPREF1078_RS15320 0.87 +0.5 150,748 - HMPREF1078_RS15320 0.87 -1.2 150,797 + -0.6 150,851 + +0.4 150,851 + -1.0 150,855 - -0.3 150,922 + -1.3 150,923 - -0.8 150,923 - +0.6 150,923 - -0.7 150,925 + -0.3 150,925 + -1.1 150,930 - +0.2 150,940 + -2.2 150,959 + +0.2 150,977 + +0.4 150,978 - -0.7 151,036 - -0.5 151,146 - -0.2 151,146 - -0.2 151,146 - +0.1 151,146 - +0.3 151,191 + +1.0 151,191 + -0.1 151,191 + -0.7 151,192 - -1.8 151,402 + +1.1 151,402 + -0.6 151,413 + +1.2 151,433 + -2.7 151,454 - +0.3 151,464 - -0.3 151,493 - -0.3 151,578 + +1.1 151,638 + -0.6 151,658 + -0.4 151,659 - -1.1 151,686 - -1.0 151,731 - -1.2 151,839 + -3.5 151,860 + HMPREF1078_RS15325 0.11 -1.7 151,861 - HMPREF1078_RS15325 0.11 -0.8 151,868 + HMPREF1078_RS15325 0.11 -1.8 151,930 + HMPREF1078_RS15325 0.15 +0.9 151,931 - HMPREF1078_RS15325 0.15 -2.2 151,931 - HMPREF1078_RS15325 0.15 -1.9 151,961 + HMPREF1078_RS15325 0.17 -0.5 151,963 + HMPREF1078_RS15325 0.18 -1.3 151,963 + HMPREF1078_RS15325 0.18 -1.3 152,039 + HMPREF1078_RS15325 0.23 -1.1 152,039 - HMPREF1078_RS15325 0.23 -1.6 152,115 + HMPREF1078_RS15325 0.28 +1.5 152,123 + HMPREF1078_RS15325 0.28 -0.2 152,179 - HMPREF1078_RS15325 0.32 -1.7 152,188 - HMPREF1078_RS15325 0.32 -1.7 152,391 - HMPREF1078_RS15325 0.46 -0.1 152,391 - HMPREF1078_RS15325 0.46 -1.0 152,409 + HMPREF1078_RS15325 0.47 -0.4 152,474 + HMPREF1078_RS15325 0.51 -0.4 152,513 + HMPREF1078_RS15325 0.54 -2.0 152,513 + HMPREF1078_RS15325 0.54 -2.0 152,560 - HMPREF1078_RS15325 0.57 +0.2 152,587 - HMPREF1078_RS15325 0.59 -0.8 152,765 + HMPREF1078_RS15325 0.71 -0.4 152,765 + HMPREF1078_RS15325 0.71 -0.7 152,767 + HMPREF1078_RS15325 0.71 -3.3 152,767 + HMPREF1078_RS15325 0.71 +0.9 152,768 - HMPREF1078_RS15325 0.71 -2.8 152,768 - HMPREF1078_RS15325 0.71 -0.3 152,768 - HMPREF1078_RS15325 0.71 -0.1 152,773 - HMPREF1078_RS15325 0.71 -2.8 153,054 + HMPREF1078_RS15325 0.90 +0.9 153,054 + HMPREF1078_RS15325 0.90 +0.7 153,063 - +1.9 153,102 - -1.1 153,106 - -0.7 153,124 - -1.6 153,161 + -0.1 153,163 + -2.0 153,164 - -0.2 153,164 - -1.5 153,168 - +0.5 153,185 + +0.5 153,186 - -1.5 153,199 - -2.7 153,199 - +0.2 153,204 + -1.5 153,209 + -2.5 153,210 - -1.3 153,210 - -2.2 153,214 - +1.3 153,214 - -0.4 153,241 - -0.2 153,248 + +0.0 153,249 - +1.7 153,257 + -2.0 153,287 - -0.2 153,320 - -0.7 153,443 + HMPREF1078_RS15330 0.71 -0.6 153,458 + +0.2 153,534 + +1.7 153,536 + +0.1 153,537 - +0.2 153,537 - +0.6 153,552 - +0.1 153,630 - HMPREF1078_RS15335 0.12 -0.7 153,630 - HMPREF1078_RS15335 0.12 -1.7 153,639 + HMPREF1078_RS15335 0.13 +0.4 153,640 - HMPREF1078_RS15335 0.13 +0.5 153,757 - HMPREF1078_RS15335 0.28 +0.5 153,757 - HMPREF1078_RS15335 0.28 +0.3 153,812 + HMPREF1078_RS15335 0.35 -0.5 153,817 - HMPREF1078_RS15335 0.36 -1.6 153,893 - HMPREF1078_RS15335 0.46 +1.3 153,893 - HMPREF1078_RS15335 0.46 +0.3 153,957 + HMPREF1078_RS15335 0.54 +1.3 154,002 + HMPREF1078_RS15335 0.60 -0.3 154,002 + HMPREF1078_RS15335 0.60 +0.9 154,003 - HMPREF1078_RS15335 0.60 -1.8 154,003 - HMPREF1078_RS15335 0.60 -0.0 154,003 - HMPREF1078_RS15335 0.60 +0.5 154,011 + HMPREF1078_RS15335 0.61 +0.1 154,145 + HMPREF1078_RS15335 0.79 +0.0 154,153 - HMPREF1078_RS15335 0.80 +0.6 154,169 - HMPREF1078_RS15335 0.82 -0.3 154,207 - HMPREF1078_RS15335 0.87 +0.1
Or see this region's nucleotide sequence