Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14940 and HMPREF1078_RS14945 are separated by 31 nucleotides HMPREF1078_RS14945 and HMPREF1078_RS14950 are separated by 12 nucleotides HMPREF1078_RS14950 and HMPREF1078_RS14955 are separated by 9 nucleotides
HMPREF1078_RS14940: HMPREF1078_RS14940 - hypothetical protein, at 38,774 to 39,529
_RS14940
HMPREF1078_RS14945: HMPREF1078_RS14945 - DUF1282 family protein, at 39,561 to 40,127
_RS14945
HMPREF1078_RS14950: HMPREF1078_RS14950 - SsrA-binding protein, at 40,140 to 40,601
_RS14950
HMPREF1078_RS14955: HMPREF1078_RS14955 - methionine synthase, at 40,611 to 44,306
_RS14955
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 38.561 kb on + strand at 38.562 kb on - strand at 38.565 kb on + strand at 38.565 kb on + strand at 38.565 kb on + strand at 38.566 kb on - strand at 38.566 kb on - strand at 38.566 kb on - strand at 38.596 kb on + strand at 38.597 kb on - strand at 38.745 kb on + strand at 38.745 kb on + strand at 38.750 kb on - strand at 38.787 kb on + strand at 38.787 kb on + strand at 38.790 kb on + strand at 38.790 kb on + strand at 38.790 kb on + strand at 38.790 kb on + strand at 38.790 kb on + strand at 38.790 kb on + strand at 38.792 kb on + strand at 38.792 kb on + strand at 38.880 kb on + strand, within HMPREF1078_RS14940 at 38.915 kb on + strand, within HMPREF1078_RS14940 at 38.915 kb on + strand, within HMPREF1078_RS14940 at 38.931 kb on + strand, within HMPREF1078_RS14940 at 38.931 kb on + strand, within HMPREF1078_RS14940 at 38.983 kb on + strand, within HMPREF1078_RS14940 at 38.996 kb on + strand, within HMPREF1078_RS14940 at 38.996 kb on + strand, within HMPREF1078_RS14940 at 39.025 kb on + strand, within HMPREF1078_RS14940 at 39.044 kb on - strand, within HMPREF1078_RS14940 at 39.052 kb on + strand, within HMPREF1078_RS14940 at 39.053 kb on - strand, within HMPREF1078_RS14940 at 39.053 kb on - strand, within HMPREF1078_RS14940 at 39.064 kb on + strand, within HMPREF1078_RS14940 at 39.064 kb on + strand, within HMPREF1078_RS14940 at 39.069 kb on - strand, within HMPREF1078_RS14940 at 39.076 kb on + strand, within HMPREF1078_RS14940 at 39.107 kb on + strand, within HMPREF1078_RS14940 at 39.107 kb on + strand, within HMPREF1078_RS14940 at 39.109 kb on + strand, within HMPREF1078_RS14940 at 39.112 kb on + strand, within HMPREF1078_RS14940 at 39.112 kb on + strand, within HMPREF1078_RS14940 at 39.124 kb on + strand, within HMPREF1078_RS14940 at 39.130 kb on + strand, within HMPREF1078_RS14940 at 39.182 kb on + strand, within HMPREF1078_RS14940 at 39.182 kb on + strand, within HMPREF1078_RS14940 at 39.184 kb on + strand, within HMPREF1078_RS14940 at 39.292 kb on + strand, within HMPREF1078_RS14940 at 39.292 kb on + strand, within HMPREF1078_RS14940 at 39.358 kb on + strand, within HMPREF1078_RS14940 at 39.359 kb on - strand, within HMPREF1078_RS14940 at 39.436 kb on + strand, within HMPREF1078_RS14940 at 39.436 kb on + strand, within HMPREF1078_RS14940 at 39.440 kb on + strand, within HMPREF1078_RS14940 at 39.440 kb on + strand, within HMPREF1078_RS14940 at 39.440 kb on + strand, within HMPREF1078_RS14940 at 39.446 kb on + strand, within HMPREF1078_RS14940 at 39.499 kb on + strand at 39.540 kb on - strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.589 kb on + strand at 39.778 kb on + strand, within HMPREF1078_RS14945 at 39.931 kb on + strand, within HMPREF1078_RS14945 at 39.931 kb on + strand, within HMPREF1078_RS14945 at 39.958 kb on + strand, within HMPREF1078_RS14945 at 39.967 kb on + strand, within HMPREF1078_RS14945 at 39.969 kb on + strand, within HMPREF1078_RS14945 at 39.969 kb on + strand, within HMPREF1078_RS14945 at 39.969 kb on + strand, within HMPREF1078_RS14945 at 39.971 kb on + strand, within HMPREF1078_RS14945 at 39.971 kb on + strand, within HMPREF1078_RS14945 at 40.005 kb on + strand, within HMPREF1078_RS14945 at 40.005 kb on + strand, within HMPREF1078_RS14945 at 40.005 kb on + strand, within HMPREF1078_RS14945 at 40.005 kb on + strand, within HMPREF1078_RS14945 at 40.005 kb on + strand, within HMPREF1078_RS14945 at 40.007 kb on + strand, within HMPREF1078_RS14945 at 40.007 kb on + strand, within HMPREF1078_RS14945 at 40.128 kb on + strand at 40.128 kb on + strand at 40.160 kb on + strand at 40.165 kb on + strand at 40.165 kb on + strand at 40.328 kb on + strand, within HMPREF1078_RS14950 at 40.332 kb on + strand, within HMPREF1078_RS14950 at 40.332 kb on + strand, within HMPREF1078_RS14950 at 40.332 kb on + strand, within HMPREF1078_RS14950 at 40.332 kb on + strand, within HMPREF1078_RS14950 at 40.332 kb on + strand, within HMPREF1078_RS14950 at 40.344 kb on + strand, within HMPREF1078_RS14950 at 40.359 kb on + strand, within HMPREF1078_RS14950 at 40.360 kb on - strand, within HMPREF1078_RS14950 at 40.442 kb on + strand, within HMPREF1078_RS14950 at 40.616 kb on + strand at 40.695 kb on - strand at 40.760 kb on + strand at 40.770 kb on + strand at 40.772 kb on - strand at 40.775 kb on + strand at 40.776 kb on - strand at 40.776 kb on - strand at 40.815 kb on + strand at 40.816 kb on - strand at 40.884 kb on + strand at 41.071 kb on - strand, within HMPREF1078_RS14955 at 41.091 kb on + strand, within HMPREF1078_RS14955 at 41.092 kb on - strand, within HMPREF1078_RS14955
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 38,561 + -0.7 38,562 - -1.0 38,565 + -1.6 38,565 + +0.4 38,565 + +0.5 38,566 - -0.7 38,566 - +0.5 38,566 - +0.4 38,596 + +0.9 38,597 - +0.7 38,745 + -1.6 38,745 + -0.2 38,750 - +0.9 38,787 + +0.2 38,787 + +0.2 38,790 + +0.4 38,790 + -0.3 38,790 + +2.5 38,790 + +0.3 38,790 + -1.4 38,790 + -0.5 38,792 + -1.4 38,792 + -0.2 38,880 + HMPREF1078_RS14940 0.14 +0.4 38,915 + HMPREF1078_RS14940 0.19 -0.1 38,915 + HMPREF1078_RS14940 0.19 +0.3 38,931 + HMPREF1078_RS14940 0.21 -0.6 38,931 + HMPREF1078_RS14940 0.21 +0.1 38,983 + HMPREF1078_RS14940 0.28 -0.4 38,996 + HMPREF1078_RS14940 0.29 -0.3 38,996 + HMPREF1078_RS14940 0.29 -0.3 39,025 + HMPREF1078_RS14940 0.33 -0.3 39,044 - HMPREF1078_RS14940 0.36 +1.3 39,052 + HMPREF1078_RS14940 0.37 -0.5 39,053 - HMPREF1078_RS14940 0.37 +0.2 39,053 - HMPREF1078_RS14940 0.37 +0.9 39,064 + HMPREF1078_RS14940 0.38 +0.3 39,064 + HMPREF1078_RS14940 0.38 -0.3 39,069 - HMPREF1078_RS14940 0.39 -1.0 39,076 + HMPREF1078_RS14940 0.40 -0.1 39,107 + HMPREF1078_RS14940 0.44 +1.0 39,107 + HMPREF1078_RS14940 0.44 -0.3 39,109 + HMPREF1078_RS14940 0.44 -0.7 39,112 + HMPREF1078_RS14940 0.45 +0.1 39,112 + HMPREF1078_RS14940 0.45 -0.1 39,124 + HMPREF1078_RS14940 0.46 +0.6 39,130 + HMPREF1078_RS14940 0.47 -0.5 39,182 + HMPREF1078_RS14940 0.54 +0.2 39,182 + HMPREF1078_RS14940 0.54 +0.6 39,184 + HMPREF1078_RS14940 0.54 +0.1 39,292 + HMPREF1078_RS14940 0.69 -0.1 39,292 + HMPREF1078_RS14940 0.69 +0.7 39,358 + HMPREF1078_RS14940 0.77 -0.6 39,359 - HMPREF1078_RS14940 0.77 -0.5 39,436 + HMPREF1078_RS14940 0.88 -0.9 39,436 + HMPREF1078_RS14940 0.88 +0.6 39,440 + HMPREF1078_RS14940 0.88 +0.2 39,440 + HMPREF1078_RS14940 0.88 -0.3 39,440 + HMPREF1078_RS14940 0.88 -1.6 39,446 + HMPREF1078_RS14940 0.89 +1.1 39,499 + -0.3 39,540 - -0.5 39,566 + -0.8 39,566 + -2.1 39,589 + -2.2 39,778 + HMPREF1078_RS14945 0.38 -1.4 39,931 + HMPREF1078_RS14945 0.65 +0.8 39,931 + HMPREF1078_RS14945 0.65 -0.4 39,958 + HMPREF1078_RS14945 0.70 -1.4 39,967 + HMPREF1078_RS14945 0.72 -0.4 39,969 + HMPREF1078_RS14945 0.72 +1.8 39,969 + HMPREF1078_RS14945 0.72 -1.3 39,969 + HMPREF1078_RS14945 0.72 -0.2 39,971 + HMPREF1078_RS14945 0.72 -2.0 39,971 + HMPREF1078_RS14945 0.72 -0.1 40,005 + HMPREF1078_RS14945 0.78 -0.9 40,005 + HMPREF1078_RS14945 0.78 -0.6 40,005 + HMPREF1078_RS14945 0.78 -1.3 40,005 + HMPREF1078_RS14945 0.78 -2.2 40,005 + HMPREF1078_RS14945 0.78 -1.2 40,007 + HMPREF1078_RS14945 0.79 -0.5 40,007 + HMPREF1078_RS14945 0.79 -0.7 40,128 + -1.4 40,128 + -0.7 40,160 + +0.1 40,165 + -0.2 40,165 + -0.8 40,328 + HMPREF1078_RS14950 0.41 +1.4 40,332 + HMPREF1078_RS14950 0.42 +2.5 40,332 + HMPREF1078_RS14950 0.42 -2.4 40,332 + HMPREF1078_RS14950 0.42 -1.3 40,332 + HMPREF1078_RS14950 0.42 -0.1 40,332 + HMPREF1078_RS14950 0.42 -1.8 40,344 + HMPREF1078_RS14950 0.44 +1.1 40,359 + HMPREF1078_RS14950 0.47 -0.8 40,360 - HMPREF1078_RS14950 0.48 +0.9 40,442 + HMPREF1078_RS14950 0.65 +1.2 40,616 + -0.1 40,695 - +0.9 40,760 + +0.5 40,770 + +4.1 40,772 - -0.2 40,775 + +0.3 40,776 - +0.2 40,776 - -0.3 40,815 + -0.5 40,816 - -0.2 40,884 + -0.1 41,071 - HMPREF1078_RS14955 0.12 +0.6 41,091 + HMPREF1078_RS14955 0.13 -1.8 41,092 - HMPREF1078_RS14955 0.13 -0.3
Or see this region's nucleotide sequence