Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14835

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
10,404	+		HMPREF1078_RS14830	0.50	+0.1
10,404	+		HMPREF1078_RS14830	0.50	-0.4
10,404	+		HMPREF1078_RS14830	0.50	-0.2
10,404	+		HMPREF1078_RS14830	0.50	+1.0
10,405	-		HMPREF1078_RS14830	0.50	+0.5
10,405	-		HMPREF1078_RS14830	0.50	+0.2
10,405	-		HMPREF1078_RS14830	0.50	+0.5
10,495	-		HMPREF1078_RS14830	0.55	+0.2
10,538	+		HMPREF1078_RS14830	0.58	-0.3
10,538	+		HMPREF1078_RS14830	0.58	+1.0
10,538	+		HMPREF1078_RS14830	0.58	+0.5
10,538	+		HMPREF1078_RS14830	0.58	+0.3
10,539	-		HMPREF1078_RS14830	0.58	-0.5
10,539	-		HMPREF1078_RS14830	0.58	-0.4
10,553	-		HMPREF1078_RS14830	0.59	-1.4
10,614	+		HMPREF1078_RS14830	0.62	-0.6
10,614	+		HMPREF1078_RS14830	0.62	-0.2
10,851	+		HMPREF1078_RS14830	0.77	-1.0
10,852	-		HMPREF1078_RS14830	0.77	+0.0
10,895	+		HMPREF1078_RS14830	0.80	+0.4
10,981	-		HMPREF1078_RS14830	0.85	-1.2
10,982	+		HMPREF1078_RS14830	0.85	+0.4
10,983	-		HMPREF1078_RS14830	0.85	-1.0
11,112	+				+1.7
11,113	-				-0.5
11,137	-				-1.0
11,151	+				+1.7
11,185	-				+0.2
11,185	-				-0.8
11,226	+				+0.1
11,287	+				-0.5
11,287	+				-1.0
11,288	-				+0.6
11,288	-				+0.5
11,288	-				-1.4
11,317	+				-0.8
11,318	-				-0.0
11,340	+				+0.5
11,340	+				+0.3
11,367	+				+0.3
11,369	+				+0.4
11,370	-				+0.5
11,370	-				+0.4
11,370	-				+0.2
11,389	-				-0.1
11,389	-				-0.7
11,596	+		HMPREF1078_RS14835	0.26	-0.4
11,644	+		HMPREF1078_RS14835	0.32	-0.1
11,710	+		HMPREF1078_RS14835	0.40	-1.4
11,711	-		HMPREF1078_RS14835	0.40	-0.1
11,948	+		HMPREF1078_RS14835	0.68	-1.2
12,074	-		HMPREF1078_RS14835	0.83	-0.1
12,142	-				-0.7
12,142	-				+0.5
12,154	+				+0.7
12,154	+				-1.8
12,154	+				-1.1
12,176	-				-0.4
12,184	-				-0.5
12,232	+				-2.2
12,233	-				-0.5
12,277	+				-0.3
12,363	-				+0.5
12,403	+		HMPREF1078_RS14840	0.12	+0.5
12,506	+		HMPREF1078_RS14840	0.25	-0.8
12,769	-		HMPREF1078_RS14840	0.58	+0.7
12,769	-		HMPREF1078_RS14840	0.58	+0.7
12,833	-		HMPREF1078_RS14840	0.65	-0.5
12,870	-		HMPREF1078_RS14840	0.70	-0.8
12,871	+		HMPREF1078_RS14840	0.70	-0.2
12,871	+		HMPREF1078_RS14840	0.70	+0.7
12,923	+		HMPREF1078_RS14840	0.77	+0.6
12,948	+		HMPREF1078_RS14840	0.80	-1.0
13,000	-		HMPREF1078_RS14840	0.86	-2.5
13,059	-				-0.0
13,059	-				-1.3
13,129	+				-1.6