Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14610 and HMPREF1078_RS14615 are separated by 76 nucleotides HMPREF1078_RS14615 and HMPREF1078_RS14620 are separated by 135 nucleotides HMPREF1078_RS14620 and HMPREF1078_RS14625 overlap by 4 nucleotides HMPREF1078_RS14625 and HMPREF1078_RS14630 are separated by 15 nucleotides HMPREF1078_RS14630 and HMPREF1078_RS14635 are separated by 1 nucleotides
HMPREF1078_RS14610: HMPREF1078_RS14610 - 6,7-dimethyl-8-ribityllumazine synthase, at 417,526 to 418,008
_RS14610
HMPREF1078_RS14615: HMPREF1078_RS14615 - tetratricopeptide repeat protein, at 418,085 to 418,771
_RS14615
HMPREF1078_RS14620: HMPREF1078_RS14620 - DNA replication and repair protein RecF, at 418,907 to 420,010
_RS14620
HMPREF1078_RS14625: HMPREF1078_RS14625 - DUF721 domain-containing protein, at 420,007 to 420,300
_RS14625
HMPREF1078_RS14630: HMPREF1078_RS14630 - YkvA family protein, at 420,316 to 420,711
_RS14630
HMPREF1078_RS14635: HMPREF1078_RS14635 - 5-formyltetrahydrofolate cyclo-ligase, at 420,713 to 421,228
_RS14635
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.060 kb on - strand at 418.060 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.070 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.174 kb on - strand, within HMPREF1078_RS14615 at 418.320 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.429 kb on - strand, within HMPREF1078_RS14615 at 418.580 kb on - strand, within HMPREF1078_RS14615 at 418.615 kb on - strand, within HMPREF1078_RS14615 at 418.662 kb on - strand, within HMPREF1078_RS14615 at 418.789 kb on - strand at 418.797 kb on - strand at 418.797 kb on - strand at 418.894 kb on + strand at 418.897 kb on + strand at 418.927 kb on + strand at 418.980 kb on + strand at 419.039 kb on + strand, within HMPREF1078_RS14620 at 419.068 kb on + strand, within HMPREF1078_RS14620 at 419.069 kb on - strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.132 kb on + strand, within HMPREF1078_RS14620 at 419.200 kb on + strand, within HMPREF1078_RS14620 at 419.280 kb on + strand, within HMPREF1078_RS14620 at 419.345 kb on + strand, within HMPREF1078_RS14620 at 419.361 kb on + strand, within HMPREF1078_RS14620 at 419.368 kb on + strand, within HMPREF1078_RS14620 at 419.459 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.501 kb on + strand, within HMPREF1078_RS14620 at 419.525 kb on + strand, within HMPREF1078_RS14620 at 419.570 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.647 kb on + strand, within HMPREF1078_RS14620 at 419.738 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.905 kb on + strand at 419.906 kb on - strand at 420.160 kb on + strand, within HMPREF1078_RS14625 at 420.287 kb on + strand at 420.288 kb on - strand at 420.288 kb on - strand at 420.291 kb on + strand at 420.315 kb on + strand at 420.382 kb on + strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.472 kb on + strand, within HMPREF1078_RS14630 at 420.473 kb on - strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.514 kb on + strand, within HMPREF1078_RS14630 at 420.515 kb on - strand, within HMPREF1078_RS14630 at 420.516 kb on + strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.522 kb on - strand, within HMPREF1078_RS14630 at 420.531 kb on - strand, within HMPREF1078_RS14630 at 420.541 kb on - strand, within HMPREF1078_RS14630 at 420.591 kb on + strand, within HMPREF1078_RS14630 at 420.592 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.656 kb on + strand, within HMPREF1078_RS14630 at 420.676 kb on - strand at 420.676 kb on - strand at 420.676 kb on - strand at 420.703 kb on - strand at 420.719 kb on + strand at 420.735 kb on - strand at 420.736 kb on + strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.785 kb on + strand, within HMPREF1078_RS14635 at 420.798 kb on + strand, within HMPREF1078_RS14635 at 420.875 kb on - strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.003 kb on - strand, within HMPREF1078_RS14635
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 418,060 - -0.5 418,060 - -0.1 418,062 - -1.2 418,062 - +0.2 418,062 - -0.4 418,062 - -0.0 418,068 - +1.0 418,068 - +0.6 418,068 - +0.1 418,070 - +0.5 418,080 - -0.9 418,080 - +1.5 418,080 - -0.9 418,080 - -0.6 418,082 - -2.5 418,082 - -2.1 418,082 - +1.9 418,082 - -0.5 418,082 - -0.7 418,082 - +0.7 418,082 - -1.7 418,087 - -0.4 418,087 - -0.4 418,087 - -1.1 418,087 - -0.4 418,115 - -0.8 418,115 - -0.8 418,115 - -2.5 418,117 - -2.8 418,117 - +0.5 418,117 - -0.2 418,174 - HMPREF1078_RS14615 0.13 -0.9 418,320 - HMPREF1078_RS14615 0.34 -0.3 418,324 - HMPREF1078_RS14615 0.35 -1.2 418,324 - HMPREF1078_RS14615 0.35 +2.5 418,324 - HMPREF1078_RS14615 0.35 +0.5 418,429 - HMPREF1078_RS14615 0.50 +0.2 418,580 - HMPREF1078_RS14615 0.72 -0.5 418,615 - HMPREF1078_RS14615 0.77 -0.1 418,662 - HMPREF1078_RS14615 0.84 -1.7 418,789 - -1.1 418,797 - +1.1 418,797 - +0.1 418,894 + +0.0 418,897 + -0.7 418,927 + +0.6 418,980 + -0.8 419,039 + HMPREF1078_RS14620 0.12 -0.2 419,068 + HMPREF1078_RS14620 0.15 -0.2 419,069 - HMPREF1078_RS14620 0.15 -1.2 419,122 + HMPREF1078_RS14620 0.19 -3.1 419,122 + HMPREF1078_RS14620 0.19 +0.5 419,123 - HMPREF1078_RS14620 0.20 +0.9 419,123 - HMPREF1078_RS14620 0.20 -0.3 419,126 + HMPREF1078_RS14620 0.20 -0.1 419,126 + HMPREF1078_RS14620 0.20 -2.3 419,126 + HMPREF1078_RS14620 0.20 -0.9 419,132 + HMPREF1078_RS14620 0.20 -0.9 419,200 + HMPREF1078_RS14620 0.27 +0.4 419,280 + HMPREF1078_RS14620 0.34 -0.1 419,345 + HMPREF1078_RS14620 0.40 +0.2 419,361 + HMPREF1078_RS14620 0.41 +1.5 419,368 + HMPREF1078_RS14620 0.42 -1.0 419,459 + HMPREF1078_RS14620 0.50 -0.1 419,474 + HMPREF1078_RS14620 0.51 -0.1 419,474 + HMPREF1078_RS14620 0.51 -1.5 419,501 + HMPREF1078_RS14620 0.54 +1.5 419,525 + HMPREF1078_RS14620 0.56 -2.1 419,570 + HMPREF1078_RS14620 0.60 -1.3 419,572 + HMPREF1078_RS14620 0.60 +0.7 419,572 + HMPREF1078_RS14620 0.60 +1.1 419,647 + HMPREF1078_RS14620 0.67 -2.0 419,738 + HMPREF1078_RS14620 0.75 +0.6 419,765 + HMPREF1078_RS14620 0.78 -2.9 419,765 + HMPREF1078_RS14620 0.78 -2.3 419,905 + +1.2 419,906 - +0.9 420,160 + HMPREF1078_RS14625 0.52 +0.9 420,287 + +0.3 420,288 - -1.7 420,288 - -0.8 420,291 + -2.1 420,315 + -1.7 420,382 + HMPREF1078_RS14630 0.17 +0.2 420,383 - HMPREF1078_RS14630 0.17 -1.9 420,383 - HMPREF1078_RS14630 0.17 -1.1 420,449 + HMPREF1078_RS14630 0.34 -2.6 420,449 + HMPREF1078_RS14630 0.34 -0.7 420,449 + HMPREF1078_RS14630 0.34 +0.2 420,449 + HMPREF1078_RS14630 0.34 +0.1 420,450 - HMPREF1078_RS14630 0.34 -2.0 420,450 - HMPREF1078_RS14630 0.34 -1.4 420,472 + HMPREF1078_RS14630 0.39 +0.1 420,473 - HMPREF1078_RS14630 0.40 +0.6 420,507 + HMPREF1078_RS14630 0.48 +0.4 420,507 + HMPREF1078_RS14630 0.48 +1.8 420,508 - HMPREF1078_RS14630 0.48 -0.1 420,508 - HMPREF1078_RS14630 0.48 +0.2 420,514 + HMPREF1078_RS14630 0.50 +1.3 420,515 - HMPREF1078_RS14630 0.50 -0.5 420,516 + HMPREF1078_RS14630 0.51 -2.5 420,517 - HMPREF1078_RS14630 0.51 -0.7 420,517 - HMPREF1078_RS14630 0.51 -1.6 420,517 - HMPREF1078_RS14630 0.51 -1.5 420,517 - HMPREF1078_RS14630 0.51 +0.9 420,517 - HMPREF1078_RS14630 0.51 +0.0 420,522 - HMPREF1078_RS14630 0.52 -1.1 420,531 - HMPREF1078_RS14630 0.54 -2.1 420,541 - HMPREF1078_RS14630 0.57 -0.3 420,591 + HMPREF1078_RS14630 0.69 +0.8 420,592 - HMPREF1078_RS14630 0.70 -0.3 420,603 - HMPREF1078_RS14630 0.72 +0.1 420,603 - HMPREF1078_RS14630 0.72 -0.7 420,639 + HMPREF1078_RS14630 0.82 +1.3 420,639 + HMPREF1078_RS14630 0.82 +0.6 420,656 + HMPREF1078_RS14630 0.86 -0.7 420,676 - -1.1 420,676 - -0.3 420,676 - -0.3 420,703 - +0.0 420,719 + +0.5 420,735 - -0.9 420,736 + +0.2 420,737 - +0.2 420,737 - -0.0 420,737 - +1.0 420,785 + HMPREF1078_RS14635 0.14 +0.1 420,798 + HMPREF1078_RS14635 0.16 +0.6 420,875 - HMPREF1078_RS14635 0.31 -1.1 421,002 + HMPREF1078_RS14635 0.56 +0.8 421,002 + HMPREF1078_RS14635 0.56 -0.7 421,002 + HMPREF1078_RS14635 0.56 +0.5 421,002 + HMPREF1078_RS14635 0.56 -1.9 421,002 + HMPREF1078_RS14635 0.56 -0.2 421,003 - HMPREF1078_RS14635 0.56 -1.3
Or see this region's nucleotide sequence