Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14555

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14545 and HMPREF1078_RS14550 are separated by 8 nucleotidesHMPREF1078_RS14550 and HMPREF1078_RS14555 are separated by 7 nucleotidesHMPREF1078_RS14555 and HMPREF1078_RS14560 are separated by 6 nucleotidesHMPREF1078_RS14560 and HMPREF1078_RS14565 are separated by 99 nucleotides HMPREF1078_RS14545: HMPREF1078_RS14545 - adenylyltransferase/cytidyltransferase family protein, at 409,682 to 410,152 _RS14545 HMPREF1078_RS14550: HMPREF1078_RS14550 - SDR family oxidoreductase, at 410,161 to 410,889 _RS14550 HMPREF1078_RS14555: HMPREF1078_RS14555 - CDP-alcohol phosphatidyltransferase family protein, at 410,897 to 411,784 _RS14555 HMPREF1078_RS14560: HMPREF1078_RS14560 - lysophospholipid acyltransferase family protein, at 411,791 to 412,618 _RS14560 HMPREF1078_RS14565: HMPREF1078_RS14565 - sigma-54 dependent transcriptional regulator, at 412,718 to 413,905 _RS14565 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.992 kb on - strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.082 kb on - strand, within HMPREF1078_RS14545at 410.082 kb on - strand, within HMPREF1078_RS14545at 410.150 kb on + strandat 410.150 kb on + strandat 410.150 kb on + strandat 410.201 kb on + strandat 410.239 kb on + strand, within HMPREF1078_RS14550at 410.239 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.311 kb on + strand, within HMPREF1078_RS14550at 410.312 kb on - strand, within HMPREF1078_RS14550at 410.329 kb on - strand, within HMPREF1078_RS14550at 410.329 kb on - strand, within HMPREF1078_RS14550at 410.372 kb on + strand, within HMPREF1078_RS14550at 410.398 kb on - strand, within HMPREF1078_RS14550at 410.398 kb on - strand, within HMPREF1078_RS14550at 410.465 kb on + strand, within HMPREF1078_RS14550at 410.465 kb on + strand, within HMPREF1078_RS14550at 410.466 kb on - strand, within HMPREF1078_RS14550at 410.466 kb on - strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.541 kb on + strand, within HMPREF1078_RS14550at 410.545 kb on - strand, within HMPREF1078_RS14550at 410.611 kb on + strand, within HMPREF1078_RS14550at 410.652 kb on + strand, within HMPREF1078_RS14550at 410.674 kb on + strand, within HMPREF1078_RS14550at 410.754 kb on + strand, within HMPREF1078_RS14550at 410.755 kb on - strand, within HMPREF1078_RS14550at 410.757 kb on + strand, within HMPREF1078_RS14550at 410.759 kb on + strand, within HMPREF1078_RS14550at 410.760 kb on - strand, within HMPREF1078_RS14550at 410.825 kb on + strandat 410.839 kb on + strandat 410.840 kb on - strandat 410.884 kb on - strandat 410.887 kb on + strandat 410.887 kb on + strandat 410.887 kb on + strandat 410.895 kb on - strandat 410.918 kb on + strandat 410.918 kb on + strandat 410.918 kb on + strandat 410.973 kb on - strandat 411.001 kb on + strand, within HMPREF1078_RS14555at 411.001 kb on + strand, within HMPREF1078_RS14555at 411.002 kb on - strand, within HMPREF1078_RS14555at 411.019 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.023 kb on - strand, within HMPREF1078_RS14555at 411.023 kb on - strand, within HMPREF1078_RS14555at 411.031 kb on + strand, within HMPREF1078_RS14555at 411.031 kb on + strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.130 kb on - strand, within HMPREF1078_RS14555at 411.202 kb on + strand, within HMPREF1078_RS14555at 411.202 kb on + strand, within HMPREF1078_RS14555at 411.235 kb on + strand, within HMPREF1078_RS14555at 411.236 kb on - strand, within HMPREF1078_RS14555at 411.236 kb on - strand, within HMPREF1078_RS14555at 411.241 kb on + strand, within HMPREF1078_RS14555at 411.333 kb on + strand, within HMPREF1078_RS14555at 411.353 kb on + strand, within HMPREF1078_RS14555at 411.356 kb on + strand, within HMPREF1078_RS14555at 411.374 kb on + strand, within HMPREF1078_RS14555at 411.374 kb on + strand, within HMPREF1078_RS14555at 411.375 kb on - strand, within HMPREF1078_RS14555at 411.423 kb on + strand, within HMPREF1078_RS14555at 411.423 kb on + strand, within HMPREF1078_RS14555at 411.423 kb on + strand, within HMPREF1078_RS14555at 411.424 kb on - strand, within HMPREF1078_RS14555at 411.449 kb on + strand, within HMPREF1078_RS14555at 411.455 kb on - strand, within HMPREF1078_RS14555at 411.460 kb on + strand, within HMPREF1078_RS14555at 411.490 kb on + strand, within HMPREF1078_RS14555at 411.490 kb on + strand, within HMPREF1078_RS14555at 411.491 kb on - strand, within HMPREF1078_RS14555at 411.491 kb on - strand, within HMPREF1078_RS14555at 411.565 kb on + strand, within HMPREF1078_RS14555at 411.578 kb on - strand, within HMPREF1078_RS14555at 411.641 kb on - strand, within HMPREF1078_RS14555at 411.649 kb on + strand, within HMPREF1078_RS14555at 411.704 kb on + strandat 411.705 kb on - strandat 411.705 kb on - strandat 411.712 kb on - strandat 411.717 kb on + strandat 411.717 kb on + strandat 411.778 kb on + strandat 411.807 kb on + strandat 411.813 kb on + strandat 411.813 kb on + strandat 411.823 kb on - strandat 411.985 kb on + strand, within HMPREF1078_RS14560at 412.064 kb on - strand, within HMPREF1078_RS14560at 412.099 kb on - strand, within HMPREF1078_RS14560at 412.227 kb on + strand, within HMPREF1078_RS14560at 412.227 kb on + strand, within HMPREF1078_RS14560at 412.313 kb on - strand, within HMPREF1078_RS14560at 412.391 kb on + strand, within HMPREF1078_RS14560at 412.391 kb on + strand, within HMPREF1078_RS14560at 412.392 kb on - strand, within HMPREF1078_RS14560at 412.473 kb on + strand, within HMPREF1078_RS14560at 412.598 kb on - strandat 412.598 kb on - strandat 412.601 kb on + strandat 412.601 kb on + strandat 412.610 kb on - strandat 412.629 kb on + strandat 412.684 kb on + strandat 412.684 kb on + strandat 412.695 kb on + strandat 412.705 kb on + strandat 412.708 kb on + strandat 412.717 kb on + strandat 412.762 kb on + strandat 412.768 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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409,909 + HMPREF1078_RS14545 0.48 -2.1
409,909 + HMPREF1078_RS14545 0.48 -1.3
409,909 + HMPREF1078_RS14545 0.48 -0.9
409,909 + HMPREF1078_RS14545 0.48 -0.3
409,909 + HMPREF1078_RS14545 0.48 -0.6
409,909 + HMPREF1078_RS14545 0.48 -0.4
409,910 - HMPREF1078_RS14545 0.48 -1.6
409,910 - HMPREF1078_RS14545 0.48 +0.5
409,910 - HMPREF1078_RS14545 0.48 -1.1
409,985 + HMPREF1078_RS14545 0.64 +0.0
409,985 + HMPREF1078_RS14545 0.64 +2.1
409,985 + HMPREF1078_RS14545 0.64 +0.5
409,985 + HMPREF1078_RS14545 0.64 -1.1
409,992 - HMPREF1078_RS14545 0.66 -0.5
410,081 + HMPREF1078_RS14545 0.85 +0.3
410,081 + HMPREF1078_RS14545 0.85 -0.8
410,081 + HMPREF1078_RS14545 0.85 +0.2
410,081 + HMPREF1078_RS14545 0.85 -2.0
410,082 - HMPREF1078_RS14545 0.85 -0.9
410,082 - HMPREF1078_RS14545 0.85 +1.5
410,150 + -0.3
410,150 + -0.5
410,150 + -0.1
410,201 + -1.2
410,239 + HMPREF1078_RS14550 0.11 -0.4
410,239 + HMPREF1078_RS14550 0.11 -0.2
410,257 + HMPREF1078_RS14550 0.13 +0.1
410,257 + HMPREF1078_RS14550 0.13 +0.7
410,257 + HMPREF1078_RS14550 0.13 +0.8
410,311 + HMPREF1078_RS14550 0.21 +0.5
410,312 - HMPREF1078_RS14550 0.21 +0.2
410,329 - HMPREF1078_RS14550 0.23 -0.1
410,329 - HMPREF1078_RS14550 0.23 +0.5
410,372 + HMPREF1078_RS14550 0.29 -0.5
410,398 - HMPREF1078_RS14550 0.33 +0.5
410,398 - HMPREF1078_RS14550 0.33 +0.5
410,465 + HMPREF1078_RS14550 0.42 +0.2
410,465 + HMPREF1078_RS14550 0.42 -1.0
410,466 - HMPREF1078_RS14550 0.42 -0.5
410,466 - HMPREF1078_RS14550 0.42 +0.2
410,468 + HMPREF1078_RS14550 0.42 -1.0
410,468 + HMPREF1078_RS14550 0.42 -0.9
410,468 + HMPREF1078_RS14550 0.42 +0.1
410,468 + HMPREF1078_RS14550 0.42 +0.1
410,541 + HMPREF1078_RS14550 0.52 +0.1
410,545 - HMPREF1078_RS14550 0.53 +0.5
410,611 + HMPREF1078_RS14550 0.62 -0.4
410,652 + HMPREF1078_RS14550 0.67 -0.9
410,674 + HMPREF1078_RS14550 0.70 -0.9
410,754 + HMPREF1078_RS14550 0.81 +0.1
410,755 - HMPREF1078_RS14550 0.81 +0.5
410,757 + HMPREF1078_RS14550 0.82 -0.7
410,759 + HMPREF1078_RS14550 0.82 -0.1
410,760 - HMPREF1078_RS14550 0.82 +0.5
410,825 + -0.9
410,839 + -1.8
410,840 - +0.5
410,884 - -0.3
410,887 + -2.0
410,887 + +2.5
410,887 + -1.7
410,895 - -0.1
410,918 + -1.8
410,918 + -1.8
410,918 + +0.2
410,973 - +0.2
411,001 + HMPREF1078_RS14555 0.12 -1.3
411,001 + HMPREF1078_RS14555 0.12 -2.9
411,002 - HMPREF1078_RS14555 0.12 +1.5
411,019 + HMPREF1078_RS14555 0.14 -2.3
411,022 + HMPREF1078_RS14555 0.14 -1.3
411,022 + HMPREF1078_RS14555 0.14 -1.4
411,022 + HMPREF1078_RS14555 0.14 +0.5
411,023 - HMPREF1078_RS14555 0.14 +0.5
411,023 - HMPREF1078_RS14555 0.14 +0.2
411,031 + HMPREF1078_RS14555 0.15 +1.7
411,031 + HMPREF1078_RS14555 0.15 -1.1
411,032 - HMPREF1078_RS14555 0.15 +0.9
411,032 - HMPREF1078_RS14555 0.15 +0.5
411,032 - HMPREF1078_RS14555 0.15 -0.1
411,130 - HMPREF1078_RS14555 0.26 +2.2
411,202 + HMPREF1078_RS14555 0.34 -0.8
411,202 + HMPREF1078_RS14555 0.34 -1.5
411,235 + HMPREF1078_RS14555 0.38 -2.0
411,236 - HMPREF1078_RS14555 0.38 -0.1
411,236 - HMPREF1078_RS14555 0.38 +2.5
411,241 + HMPREF1078_RS14555 0.39 -1.3
411,333 + HMPREF1078_RS14555 0.49 -0.9
411,353 + HMPREF1078_RS14555 0.51 -1.6
411,356 + HMPREF1078_RS14555 0.52 -1.1
411,374 + HMPREF1078_RS14555 0.54 +0.7
411,374 + HMPREF1078_RS14555 0.54 -0.2
411,375 - HMPREF1078_RS14555 0.54 -0.3
411,423 + HMPREF1078_RS14555 0.59 +0.6
411,423 + HMPREF1078_RS14555 0.59 -1.5
411,423 + HMPREF1078_RS14555 0.59 -2.2
411,424 - HMPREF1078_RS14555 0.59 +0.5
411,449 + HMPREF1078_RS14555 0.62 +0.5
411,455 - HMPREF1078_RS14555 0.63 +0.5
411,460 + HMPREF1078_RS14555 0.63 +0.5
411,490 + HMPREF1078_RS14555 0.67 -0.7
411,490 + HMPREF1078_RS14555 0.67 -0.8
411,491 - HMPREF1078_RS14555 0.67 +0.9
411,491 - HMPREF1078_RS14555 0.67 +0.5
411,565 + HMPREF1078_RS14555 0.75 -0.8
411,578 - HMPREF1078_RS14555 0.77 +0.5
411,641 - HMPREF1078_RS14555 0.84 -0.5
411,649 + HMPREF1078_RS14555 0.85 -2.3
411,704 + -0.8
411,705 - -0.7
411,705 - +0.2
411,712 - -1.4
411,717 + -0.1
411,717 + -0.2
411,778 + -0.6
411,807 + +1.5
411,813 + -0.8
411,813 + +0.9
411,823 - +2.5
411,985 + HMPREF1078_RS14560 0.23 +1.5
412,064 - HMPREF1078_RS14560 0.33 +0.5
412,099 - HMPREF1078_RS14560 0.37 +1.5
412,227 + HMPREF1078_RS14560 0.53 +0.5
412,227 + HMPREF1078_RS14560 0.53 +2.5
412,313 - HMPREF1078_RS14560 0.63 +0.9
412,391 + HMPREF1078_RS14560 0.72 +0.9
412,391 + HMPREF1078_RS14560 0.72 +2.5
412,392 - HMPREF1078_RS14560 0.73 +2.5
412,473 + HMPREF1078_RS14560 0.82 +0.2
412,598 - -1.8
412,598 - -1.5
412,601 + -2.0
412,601 + -3.5
412,610 - -0.9
412,629 + +0.1
412,684 + -0.3
412,684 + -0.6
412,695 + +0.4
412,705 + -1.2
412,708 + +0.3
412,717 + +0.0
412,762 + -0.7
412,768 + +0.5

Or see this region's nucleotide sequence