Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14335 and HMPREF1078_RS14340 overlap by 4 nucleotides HMPREF1078_RS14340 and HMPREF1078_RS14345 are separated by 23 nucleotides HMPREF1078_RS14345 and HMPREF1078_RS14350 are separated by 12 nucleotides HMPREF1078_RS14350 and HMPREF1078_RS14355 are separated by 51 nucleotides
HMPREF1078_RS14335: HMPREF1078_RS14335 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 353,618 to 354,844
_RS14335
HMPREF1078_RS14340: HMPREF1078_RS14340 - proline/glycine betaine ABC transporter permease, at 354,841 to 355,656
_RS14340
HMPREF1078_RS14345: HMPREF1078_RS14345 - glycine betaine ABC transporter substrate-binding protein, at 355,680 to 356,549
_RS14345
HMPREF1078_RS14350: HMPREF1078_RS14350 - GDSL-type esterase/lipase family protein, at 356,562 to 357,338
_RS14350
HMPREF1078_RS14355: HMPREF1078_RS14355 - ferritin, at 357,390 to 357,872
_RS14355
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 354.685 kb on + strand, within HMPREF1078_RS14335 at 354.685 kb on + strand, within HMPREF1078_RS14335 at 354.686 kb on - strand, within HMPREF1078_RS14335 at 354.686 kb on - strand, within HMPREF1078_RS14335 at 354.686 kb on - strand, within HMPREF1078_RS14335 at 354.835 kb on - strand at 354.840 kb on + strand at 354.846 kb on - strand at 354.846 kb on - strand at 354.859 kb on + strand at 354.860 kb on - strand at 354.861 kb on + strand at 354.876 kb on + strand at 354.914 kb on + strand at 354.914 kb on + strand at 354.915 kb on - strand at 354.959 kb on + strand, within HMPREF1078_RS14340 at 355.243 kb on + strand, within HMPREF1078_RS14340 at 355.243 kb on + strand, within HMPREF1078_RS14340 at 355.307 kb on + strand, within HMPREF1078_RS14340 at 355.336 kb on - strand, within HMPREF1078_RS14340 at 355.369 kb on - strand, within HMPREF1078_RS14340 at 355.374 kb on - strand, within HMPREF1078_RS14340 at 355.424 kb on + strand, within HMPREF1078_RS14340 at 355.424 kb on + strand, within HMPREF1078_RS14340 at 355.443 kb on - strand, within HMPREF1078_RS14340 at 355.529 kb on + strand, within HMPREF1078_RS14340 at 355.529 kb on + strand, within HMPREF1078_RS14340 at 355.542 kb on - strand, within HMPREF1078_RS14340 at 355.607 kb on + strand at 355.608 kb on - strand at 355.626 kb on + strand at 355.626 kb on + strand at 355.627 kb on - strand at 355.629 kb on + strand at 355.629 kb on + strand at 355.630 kb on - strand at 355.648 kb on - strand at 355.675 kb on + strand at 355.708 kb on + strand at 355.715 kb on + strand at 355.788 kb on + strand, within HMPREF1078_RS14345 at 355.821 kb on + strand, within HMPREF1078_RS14345 at 355.821 kb on + strand, within HMPREF1078_RS14345 at 355.854 kb on + strand, within HMPREF1078_RS14345 at 355.854 kb on + strand, within HMPREF1078_RS14345 at 355.928 kb on + strand, within HMPREF1078_RS14345 at 355.963 kb on - strand, within HMPREF1078_RS14345 at 355.963 kb on - strand, within HMPREF1078_RS14345 at 355.963 kb on - strand, within HMPREF1078_RS14345 at 355.963 kb on - strand, within HMPREF1078_RS14345 at 355.963 kb on - strand, within HMPREF1078_RS14345 at 356.008 kb on - strand, within HMPREF1078_RS14345 at 356.033 kb on - strand, within HMPREF1078_RS14345 at 356.042 kb on + strand, within HMPREF1078_RS14345 at 356.044 kb on - strand, within HMPREF1078_RS14345 at 356.044 kb on - strand, within HMPREF1078_RS14345 at 356.044 kb on - strand, within HMPREF1078_RS14345 at 356.060 kb on + strand, within HMPREF1078_RS14345 at 356.062 kb on + strand, within HMPREF1078_RS14345 at 356.297 kb on + strand, within HMPREF1078_RS14345 at 356.486 kb on + strand at 356.601 kb on - strand at 356.617 kb on - strand at 356.617 kb on - strand at 356.618 kb on + strand at 356.618 kb on + strand at 356.619 kb on - strand at 356.650 kb on + strand, within HMPREF1078_RS14350 at 356.651 kb on - strand, within HMPREF1078_RS14350 at 356.651 kb on - strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.786 kb on - strand, within HMPREF1078_RS14350 at 356.796 kb on - strand, within HMPREF1078_RS14350 at 356.901 kb on - strand, within HMPREF1078_RS14350 at 356.927 kb on + strand, within HMPREF1078_RS14350 at 356.928 kb on - strand, within HMPREF1078_RS14350 at 356.964 kb on + strand, within HMPREF1078_RS14350 at 356.965 kb on - strand, within HMPREF1078_RS14350 at 356.967 kb on + strand, within HMPREF1078_RS14350 at 357.028 kb on + strand, within HMPREF1078_RS14350 at 357.028 kb on + strand, within HMPREF1078_RS14350 at 357.063 kb on + strand, within HMPREF1078_RS14350 at 357.063 kb on + strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.083 kb on - strand, within HMPREF1078_RS14350 at 357.112 kb on - strand, within HMPREF1078_RS14350 at 357.114 kb on + strand, within HMPREF1078_RS14350 at 357.124 kb on + strand, within HMPREF1078_RS14350 at 357.144 kb on + strand, within HMPREF1078_RS14350 at 357.174 kb on - strand, within HMPREF1078_RS14350 at 357.182 kb on + strand, within HMPREF1078_RS14350 at 357.182 kb on + strand, within HMPREF1078_RS14350 at 357.213 kb on + strand, within HMPREF1078_RS14350 at 357.216 kb on - strand, within HMPREF1078_RS14350 at 357.258 kb on + strand, within HMPREF1078_RS14350 at 357.263 kb on - strand at 357.263 kb on - strand at 357.263 kb on - strand at 357.263 kb on - strand at 357.317 kb on - strand at 357.340 kb on - strand at 357.340 kb on - strand at 357.355 kb on - strand at 357.355 kb on - strand at 357.355 kb on - strand at 357.374 kb on + strand at 357.374 kb on + strand at 357.374 kb on + strand at 357.457 kb on - strand, within HMPREF1078_RS14355 at 357.468 kb on - strand, within HMPREF1078_RS14355 at 357.536 kb on + strand, within HMPREF1078_RS14355
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 354,685 + HMPREF1078_RS14335 0.87 +1.0 354,685 + HMPREF1078_RS14335 0.87 +0.3 354,686 - HMPREF1078_RS14335 0.87 -0.2 354,686 - HMPREF1078_RS14335 0.87 -0.7 354,686 - HMPREF1078_RS14335 0.87 -1.1 354,835 - -0.4 354,840 + +0.7 354,846 - -0.2 354,846 - +0.5 354,859 + +0.0 354,860 - +0.4 354,861 + -1.7 354,876 + -0.5 354,914 + +0.3 354,914 + -1.2 354,915 - -1.1 354,959 + HMPREF1078_RS14340 0.14 -0.9 355,243 + HMPREF1078_RS14340 0.49 -1.6 355,243 + HMPREF1078_RS14340 0.49 +0.1 355,307 + HMPREF1078_RS14340 0.57 -0.1 355,336 - HMPREF1078_RS14340 0.61 -0.6 355,369 - HMPREF1078_RS14340 0.65 -0.1 355,374 - HMPREF1078_RS14340 0.65 -0.0 355,424 + HMPREF1078_RS14340 0.71 +1.0 355,424 + HMPREF1078_RS14340 0.71 -1.0 355,443 - HMPREF1078_RS14340 0.74 +0.2 355,529 + HMPREF1078_RS14340 0.84 -1.3 355,529 + HMPREF1078_RS14340 0.84 +0.5 355,542 - HMPREF1078_RS14340 0.86 -0.5 355,607 + -0.1 355,608 - -1.6 355,626 + -0.3 355,626 + -1.3 355,627 - -1.4 355,629 + -0.3 355,629 + +1.4 355,630 - -0.8 355,648 - -1.9 355,675 + -1.4 355,708 + +0.4 355,715 + -0.4 355,788 + HMPREF1078_RS14345 0.12 -2.0 355,821 + HMPREF1078_RS14345 0.16 -0.4 355,821 + HMPREF1078_RS14345 0.16 -0.9 355,854 + HMPREF1078_RS14345 0.20 -0.3 355,854 + HMPREF1078_RS14345 0.20 -0.9 355,928 + HMPREF1078_RS14345 0.29 -0.7 355,963 - HMPREF1078_RS14345 0.33 -1.1 355,963 - HMPREF1078_RS14345 0.33 +1.7 355,963 - HMPREF1078_RS14345 0.33 -0.7 355,963 - HMPREF1078_RS14345 0.33 -2.4 355,963 - HMPREF1078_RS14345 0.33 -1.4 356,008 - HMPREF1078_RS14345 0.38 -1.7 356,033 - HMPREF1078_RS14345 0.41 -1.1 356,042 + HMPREF1078_RS14345 0.42 -1.4 356,044 - HMPREF1078_RS14345 0.42 -1.0 356,044 - HMPREF1078_RS14345 0.42 -1.5 356,044 - HMPREF1078_RS14345 0.42 -0.5 356,060 + HMPREF1078_RS14345 0.44 -0.6 356,062 + HMPREF1078_RS14345 0.44 -1.9 356,297 + HMPREF1078_RS14345 0.71 +0.7 356,486 + -0.2 356,601 - +0.8 356,617 - -0.8 356,617 - +0.9 356,618 + -1.2 356,618 + +0.1 356,619 - -0.7 356,650 + HMPREF1078_RS14350 0.11 -0.8 356,651 - HMPREF1078_RS14350 0.11 +0.3 356,651 - HMPREF1078_RS14350 0.11 -0.4 356,653 + HMPREF1078_RS14350 0.12 +0.0 356,653 + HMPREF1078_RS14350 0.12 -0.5 356,653 + HMPREF1078_RS14350 0.12 -0.3 356,785 + HMPREF1078_RS14350 0.29 +0.9 356,785 + HMPREF1078_RS14350 0.29 +0.9 356,785 + HMPREF1078_RS14350 0.29 +0.2 356,786 - HMPREF1078_RS14350 0.29 -1.4 356,796 - HMPREF1078_RS14350 0.30 +1.2 356,901 - HMPREF1078_RS14350 0.44 +1.1 356,927 + HMPREF1078_RS14350 0.47 -0.5 356,928 - HMPREF1078_RS14350 0.47 -1.0 356,964 + HMPREF1078_RS14350 0.52 -1.0 356,965 - HMPREF1078_RS14350 0.52 -1.4 356,967 + HMPREF1078_RS14350 0.52 +1.1 357,028 + HMPREF1078_RS14350 0.60 +0.6 357,028 + HMPREF1078_RS14350 0.60 -0.2 357,063 + HMPREF1078_RS14350 0.64 +0.6 357,063 + HMPREF1078_RS14350 0.64 +0.2 357,064 - HMPREF1078_RS14350 0.65 +0.3 357,064 - HMPREF1078_RS14350 0.65 +0.6 357,064 - HMPREF1078_RS14350 0.65 -0.8 357,064 - HMPREF1078_RS14350 0.65 -1.5 357,078 + HMPREF1078_RS14350 0.66 -0.2 357,078 + HMPREF1078_RS14350 0.66 +0.9 357,078 + HMPREF1078_RS14350 0.66 -0.8 357,083 - HMPREF1078_RS14350 0.67 +0.8 357,112 - HMPREF1078_RS14350 0.71 -1.4 357,114 + HMPREF1078_RS14350 0.71 -2.2 357,124 + HMPREF1078_RS14350 0.72 -0.5 357,144 + HMPREF1078_RS14350 0.75 -0.0 357,174 - HMPREF1078_RS14350 0.79 -1.3 357,182 + HMPREF1078_RS14350 0.80 -2.7 357,182 + HMPREF1078_RS14350 0.80 -0.1 357,213 + HMPREF1078_RS14350 0.84 -0.2 357,216 - HMPREF1078_RS14350 0.84 -0.8 357,258 + HMPREF1078_RS14350 0.90 -0.2 357,263 - -0.6 357,263 - -0.8 357,263 - -2.2 357,263 - -0.5 357,317 - -1.3 357,340 - +0.4 357,340 - +1.7 357,355 - +0.1 357,355 - -1.1 357,355 - -2.0 357,374 + -0.3 357,374 + -0.3 357,374 + -0.5 357,457 - HMPREF1078_RS14355 0.14 +1.1 357,468 - HMPREF1078_RS14355 0.16 +0.7 357,536 + HMPREF1078_RS14355 0.30 -1.8
Or see this region's nucleotide sequence