Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14295 and HMPREF1078_RS14300 are separated by 14 nucleotides
HMPREF1078_RS14295: HMPREF1078_RS14295 - SusC/RagA family TonB-linked outer membrane protein, at 338,408 to 341,446
_RS14295
HMPREF1078_RS14300: HMPREF1078_RS14300 - RagB/SusD family nutrient uptake outer membrane protein, at 341,461 to 343,182
_RS14300
Position (kb) 338
339
340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.470 kb on + strand at 337.588 kb on - strand at 337.588 kb on - strand at 337.588 kb on - strand at 337.595 kb on + strand at 337.595 kb on + strand at 337.595 kb on + strand at 337.595 kb on + strand at 337.596 kb on - strand at 337.596 kb on - strand at 337.599 kb on + strand at 337.599 kb on + strand at 337.599 kb on + strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.600 kb on - strand at 337.618 kb on - strand at 337.633 kb on + strand at 337.633 kb on + strand at 337.634 kb on - strand at 337.634 kb on - strand at 337.709 kb on + strand at 337.710 kb on - strand at 337.727 kb on + strand at 337.728 kb on - strand at 337.762 kb on + strand at 337.795 kb on - strand at 337.795 kb on - strand at 337.795 kb on - strand at 337.795 kb on - strand at 337.812 kb on + strand at 337.839 kb on - strand at 337.881 kb on + strand at 337.882 kb on - strand at 337.899 kb on - strand at 337.899 kb on - strand at 337.903 kb on + strand at 337.903 kb on + strand at 337.917 kb on + strand at 337.917 kb on + strand at 337.925 kb on - strand at 337.925 kb on - strand at 337.925 kb on - strand at 337.967 kb on - strand at 337.982 kb on + strand at 337.989 kb on - strand at 337.989 kb on - strand at 338.090 kb on + strand at 338.091 kb on - strand at 338.092 kb on + strand at 338.092 kb on + strand at 338.092 kb on + strand at 338.097 kb on + strand at 338.111 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.159 kb on + strand at 338.160 kb on - strand at 338.160 kb on - strand at 338.189 kb on - strand at 338.194 kb on - strand at 338.222 kb on - strand at 338.224 kb on + strand at 338.231 kb on - strand at 338.251 kb on + strand at 338.252 kb on - strand at 338.272 kb on - strand at 338.286 kb on + strand at 338.286 kb on + strand at 338.286 kb on + strand at 338.287 kb on - strand at 338.288 kb on + strand at 338.288 kb on + strand at 338.290 kb on + strand at 338.291 kb on - strand at 338.296 kb on + strand at 338.296 kb on + strand at 338.296 kb on + strand at 338.297 kb on - strand at 338.303 kb on + strand at 338.310 kb on - strand at 338.334 kb on - strand at 338.378 kb on - strand at 338.398 kb on - strand at 338.599 kb on + strand at 338.635 kb on + strand at 338.636 kb on - strand at 338.656 kb on + strand at 338.668 kb on + strand at 338.724 kb on + strand, within HMPREF1078_RS14295 at 338.725 kb on - strand, within HMPREF1078_RS14295 at 338.746 kb on + strand, within HMPREF1078_RS14295 at 338.746 kb on + strand, within HMPREF1078_RS14295 at 339.146 kb on - strand, within HMPREF1078_RS14295 at 339.149 kb on + strand, within HMPREF1078_RS14295 at 339.321 kb on - strand, within HMPREF1078_RS14295 at 339.422 kb on + strand, within HMPREF1078_RS14295 at 339.423 kb on - strand, within HMPREF1078_RS14295 at 339.424 kb on + strand, within HMPREF1078_RS14295 at 339.424 kb on + strand, within HMPREF1078_RS14295 at 339.425 kb on - strand, within HMPREF1078_RS14295 at 339.482 kb on - strand, within HMPREF1078_RS14295 at 339.650 kb on + strand, within HMPREF1078_RS14295 at 339.650 kb on + strand, within HMPREF1078_RS14295 at 339.652 kb on + strand, within HMPREF1078_RS14295 at 339.657 kb on + strand, within HMPREF1078_RS14295 at 339.657 kb on + strand, within HMPREF1078_RS14295 at 339.682 kb on + strand, within HMPREF1078_RS14295 at 339.683 kb on - strand, within HMPREF1078_RS14295 at 339.967 kb on + strand, within HMPREF1078_RS14295 at 340.184 kb on + strand, within HMPREF1078_RS14295 at 340.184 kb on + strand, within HMPREF1078_RS14295 at 340.185 kb on - strand, within HMPREF1078_RS14295 at 340.186 kb on + strand, within HMPREF1078_RS14295 at 340.186 kb on + strand, within HMPREF1078_RS14295 at 340.186 kb on + strand, within HMPREF1078_RS14295 at 340.202 kb on - strand, within HMPREF1078_RS14295 at 340.225 kb on - strand, within HMPREF1078_RS14295 at 340.379 kb on + strand, within HMPREF1078_RS14295 at 340.381 kb on + strand, within HMPREF1078_RS14295 at 340.390 kb on + strand, within HMPREF1078_RS14295 at 340.390 kb on + strand, within HMPREF1078_RS14295 at 340.391 kb on - strand, within HMPREF1078_RS14295 at 340.440 kb on - strand, within HMPREF1078_RS14295 at 340.440 kb on - strand, within HMPREF1078_RS14295 at 340.445 kb on + strand, within HMPREF1078_RS14295 at 340.451 kb on - strand, within HMPREF1078_RS14295 at 340.451 kb on - strand, within HMPREF1078_RS14295 at 340.556 kb on + strand, within HMPREF1078_RS14295 at 340.613 kb on + strand, within HMPREF1078_RS14295 at 340.697 kb on - strand, within HMPREF1078_RS14295 at 340.739 kb on - strand, within HMPREF1078_RS14295 at 340.742 kb on - strand, within HMPREF1078_RS14295 at 340.778 kb on + strand, within HMPREF1078_RS14295 at 340.779 kb on - strand, within HMPREF1078_RS14295 at 340.865 kb on - strand, within HMPREF1078_RS14295 at 340.910 kb on + strand, within HMPREF1078_RS14295 at 340.910 kb on + strand, within HMPREF1078_RS14295 at 340.911 kb on - strand, within HMPREF1078_RS14295 at 340.911 kb on - strand, within HMPREF1078_RS14295 at 340.912 kb on + strand, within HMPREF1078_RS14295 at 340.912 kb on + strand, within HMPREF1078_RS14295 at 340.967 kb on + strand, within HMPREF1078_RS14295 at 340.968 kb on - strand, within HMPREF1078_RS14295 at 340.968 kb on - strand, within HMPREF1078_RS14295 at 340.968 kb on - strand, within HMPREF1078_RS14295 at 340.968 kb on - strand, within HMPREF1078_RS14295 at 340.968 kb on - strand, within HMPREF1078_RS14295 at 340.969 kb on + strand, within HMPREF1078_RS14295 at 340.969 kb on + strand, within HMPREF1078_RS14295 at 340.970 kb on - strand, within HMPREF1078_RS14295 at 340.971 kb on + strand, within HMPREF1078_RS14295 at 340.971 kb on + strand, within HMPREF1078_RS14295 at 340.971 kb on + strand, within HMPREF1078_RS14295 at 340.972 kb on - strand, within HMPREF1078_RS14295 at 340.979 kb on + strand, within HMPREF1078_RS14295 at 340.980 kb on - strand, within HMPREF1078_RS14295 at 341.075 kb on + strand, within HMPREF1078_RS14295 at 341.078 kb on - strand, within HMPREF1078_RS14295 at 341.081 kb on - strand, within HMPREF1078_RS14295 at 341.089 kb on + strand, within HMPREF1078_RS14295 at 341.090 kb on - strand, within HMPREF1078_RS14295 at 341.090 kb on - strand, within HMPREF1078_RS14295 at 341.187 kb on - strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.204 kb on - strand at 341.239 kb on + strand at 341.239 kb on + strand at 341.239 kb on + strand at 341.240 kb on - strand at 341.424 kb on + strand at 341.424 kb on + strand at 341.425 kb on - strand at 341.425 kb on - strand at 341.428 kb on + strand at 341.429 kb on - strand at 341.438 kb on - strand at 341.447 kb on + strand at 341.448 kb on - strand at 341.513 kb on + strand at 341.530 kb on - strand at 341.577 kb on + strand at 341.690 kb on + strand, within HMPREF1078_RS14300 at 341.700 kb on + strand, within HMPREF1078_RS14300 at 341.719 kb on + strand, within HMPREF1078_RS14300 at 341.758 kb on + strand, within HMPREF1078_RS14300 at 341.761 kb on - strand, within HMPREF1078_RS14300 at 341.914 kb on - strand, within HMPREF1078_RS14300 at 341.932 kb on + strand, within HMPREF1078_RS14300 at 341.933 kb on - strand, within HMPREF1078_RS14300 at 342.163 kb on + strand, within HMPREF1078_RS14300 at 342.164 kb on - strand, within HMPREF1078_RS14300 at 342.222 kb on + strand, within HMPREF1078_RS14300 at 342.223 kb on - strand, within HMPREF1078_RS14300 at 342.223 kb on - strand, within HMPREF1078_RS14300 at 342.235 kb on + strand, within HMPREF1078_RS14300 at 342.236 kb on - strand, within HMPREF1078_RS14300 at 342.236 kb on - strand, within HMPREF1078_RS14300 at 342.264 kb on - strand, within HMPREF1078_RS14300 at 342.367 kb on + strand, within HMPREF1078_RS14300 at 342.368 kb on - strand, within HMPREF1078_RS14300 at 342.382 kb on + strand, within HMPREF1078_RS14300
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 337,470 + -1.1 337,588 - -0.7 337,588 - -1.5 337,588 - -0.5 337,595 + -1.7 337,595 + +0.6 337,595 + +0.6 337,595 + +0.4 337,596 - +0.3 337,596 - -0.5 337,599 + -1.2 337,599 + +0.7 337,599 + +0.4 337,600 - -0.4 337,600 - +0.8 337,600 - -0.7 337,600 - +0.3 337,600 - -0.2 337,600 - -0.1 337,600 - -0.2 337,600 - +0.2 337,618 - -1.1 337,633 + +0.8 337,633 + +0.1 337,634 - +1.7 337,634 - -0.0 337,709 + -0.5 337,710 - +0.2 337,727 + +0.8 337,728 - -0.4 337,762 + -0.4 337,795 - -0.5 337,795 - -2.2 337,795 - -1.0 337,795 - -1.1 337,812 + -0.2 337,839 - -3.3 337,881 + -1.5 337,882 - -2.2 337,899 - -2.2 337,899 - +0.5 337,903 + -1.7 337,903 + -1.9 337,917 + -0.9 337,917 + -1.9 337,925 - -0.8 337,925 - -0.4 337,925 - -0.0 337,967 - +0.4 337,982 + -0.2 337,989 - -0.1 337,989 - +0.4 338,090 + +0.6 338,091 - +0.1 338,092 + -0.2 338,092 + +0.0 338,092 + +0.5 338,097 + +0.4 338,111 + +0.8 338,115 + +0.3 338,115 + -0.0 338,116 - -0.5 338,159 + +0.7 338,160 - -1.5 338,160 - +0.4 338,189 - -1.1 338,194 - +0.7 338,222 - +1.2 338,224 + +0.7 338,231 - -0.9 338,251 + +2.5 338,252 - +0.4 338,272 - +0.1 338,286 + -0.3 338,286 + +1.4 338,286 + +1.1 338,287 - -2.8 338,288 + +1.8 338,288 + +1.6 338,290 + +0.5 338,291 - -0.3 338,296 + -0.1 338,296 + +1.2 338,296 + +1.2 338,297 - -2.2 338,303 + +0.0 338,310 - +1.2 338,334 - -0.3 338,378 - +0.7 338,398 - -2.5 338,599 + -0.8 338,635 + +0.2 338,636 - -2.0 338,656 + -0.4 338,668 + -0.6 338,724 + HMPREF1078_RS14295 0.10 -0.4 338,725 - HMPREF1078_RS14295 0.10 -0.9 338,746 + HMPREF1078_RS14295 0.11 -1.7 338,746 + HMPREF1078_RS14295 0.11 -2.3 339,146 - HMPREF1078_RS14295 0.24 -1.4 339,149 + HMPREF1078_RS14295 0.24 -1.3 339,321 - HMPREF1078_RS14295 0.30 -1.7 339,422 + HMPREF1078_RS14295 0.33 +0.8 339,423 - HMPREF1078_RS14295 0.33 -1.8 339,424 + HMPREF1078_RS14295 0.33 -0.2 339,424 + HMPREF1078_RS14295 0.33 -2.9 339,425 - HMPREF1078_RS14295 0.33 -2.5 339,482 - HMPREF1078_RS14295 0.35 -0.1 339,650 + HMPREF1078_RS14295 0.41 -1.3 339,650 + HMPREF1078_RS14295 0.41 -1.4 339,652 + HMPREF1078_RS14295 0.41 +0.6 339,657 + HMPREF1078_RS14295 0.41 -1.5 339,657 + HMPREF1078_RS14295 0.41 -0.8 339,682 + HMPREF1078_RS14295 0.42 -1.8 339,683 - HMPREF1078_RS14295 0.42 -1.3 339,967 + HMPREF1078_RS14295 0.51 -1.8 340,184 + HMPREF1078_RS14295 0.58 -0.6 340,184 + HMPREF1078_RS14295 0.58 -1.8 340,185 - HMPREF1078_RS14295 0.58 -1.1 340,186 + HMPREF1078_RS14295 0.59 -3.4 340,186 + HMPREF1078_RS14295 0.59 -2.2 340,186 + HMPREF1078_RS14295 0.59 -2.9 340,202 - HMPREF1078_RS14295 0.59 -1.7 340,225 - HMPREF1078_RS14295 0.60 +0.9 340,379 + HMPREF1078_RS14295 0.65 -1.2 340,381 + HMPREF1078_RS14295 0.65 -1.4 340,390 + HMPREF1078_RS14295 0.65 -1.0 340,390 + HMPREF1078_RS14295 0.65 -0.5 340,391 - HMPREF1078_RS14295 0.65 +0.1 340,440 - HMPREF1078_RS14295 0.67 +0.9 340,440 - HMPREF1078_RS14295 0.67 -2.9 340,445 + HMPREF1078_RS14295 0.67 -1.3 340,451 - HMPREF1078_RS14295 0.67 +0.4 340,451 - HMPREF1078_RS14295 0.67 +0.8 340,556 + HMPREF1078_RS14295 0.71 -0.4 340,613 + HMPREF1078_RS14295 0.73 -2.2 340,697 - HMPREF1078_RS14295 0.75 -0.6 340,739 - HMPREF1078_RS14295 0.77 -1.1 340,742 - HMPREF1078_RS14295 0.77 +1.2 340,778 + HMPREF1078_RS14295 0.78 +0.7 340,779 - HMPREF1078_RS14295 0.78 -0.3 340,865 - HMPREF1078_RS14295 0.81 -0.9 340,910 + HMPREF1078_RS14295 0.82 -0.1 340,910 + HMPREF1078_RS14295 0.82 -0.5 340,911 - HMPREF1078_RS14295 0.82 -0.1 340,911 - HMPREF1078_RS14295 0.82 -1.0 340,912 + HMPREF1078_RS14295 0.82 +0.9 340,912 + HMPREF1078_RS14295 0.82 +0.3 340,967 + HMPREF1078_RS14295 0.84 -0.9 340,968 - HMPREF1078_RS14295 0.84 -1.7 340,968 - HMPREF1078_RS14295 0.84 -0.7 340,968 - HMPREF1078_RS14295 0.84 -2.9 340,968 - HMPREF1078_RS14295 0.84 -2.3 340,968 - HMPREF1078_RS14295 0.84 +0.2 340,969 + HMPREF1078_RS14295 0.84 -0.4 340,969 + HMPREF1078_RS14295 0.84 -3.0 340,970 - HMPREF1078_RS14295 0.84 -1.4 340,971 + HMPREF1078_RS14295 0.84 -0.9 340,971 + HMPREF1078_RS14295 0.84 -1.2 340,971 + HMPREF1078_RS14295 0.84 +0.5 340,972 - HMPREF1078_RS14295 0.84 -0.1 340,979 + HMPREF1078_RS14295 0.85 -1.7 340,980 - HMPREF1078_RS14295 0.85 -0.8 341,075 + HMPREF1078_RS14295 0.88 -1.2 341,078 - HMPREF1078_RS14295 0.88 -0.5 341,081 - HMPREF1078_RS14295 0.88 -2.2 341,089 + HMPREF1078_RS14295 0.88 -1.7 341,090 - HMPREF1078_RS14295 0.88 -0.7 341,090 - HMPREF1078_RS14295 0.88 -0.4 341,187 - -0.5 341,203 + -1.5 341,203 + -1.5 341,204 - -1.0 341,239 + -0.0 341,239 + -2.1 341,239 + -0.3 341,240 - -0.2 341,424 + -0.1 341,424 + -2.0 341,425 - -1.2 341,425 - -3.6 341,428 + -0.2 341,429 - -0.7 341,438 - -1.2 341,447 + -1.5 341,448 - -0.2 341,513 + -1.0 341,530 - -1.2 341,577 + -1.3 341,690 + HMPREF1078_RS14300 0.13 -0.7 341,700 + HMPREF1078_RS14300 0.14 -1.6 341,719 + HMPREF1078_RS14300 0.15 -0.5 341,758 + HMPREF1078_RS14300 0.17 +0.8 341,761 - HMPREF1078_RS14300 0.17 +0.1 341,914 - HMPREF1078_RS14300 0.26 +1.5 341,932 + HMPREF1078_RS14300 0.27 +0.2 341,933 - HMPREF1078_RS14300 0.27 -0.7 342,163 + HMPREF1078_RS14300 0.41 +0.1 342,164 - HMPREF1078_RS14300 0.41 -0.2 342,222 + HMPREF1078_RS14300 0.44 -0.8 342,223 - HMPREF1078_RS14300 0.44 +0.9 342,223 - HMPREF1078_RS14300 0.44 -1.3 342,235 + HMPREF1078_RS14300 0.45 +0.1 342,236 - HMPREF1078_RS14300 0.45 -2.5 342,236 - HMPREF1078_RS14300 0.45 -3.4 342,264 - HMPREF1078_RS14300 0.47 -3.0 342,367 + HMPREF1078_RS14300 0.53 -2.5 342,368 - HMPREF1078_RS14300 0.53 -2.2 342,382 + HMPREF1078_RS14300 0.53 -2.1
Or see this region's nucleotide sequence