Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14165

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14160 and HMPREF1078_RS14165 are separated by 60 nucleotidesHMPREF1078_RS14165 and HMPREF1078_RS14170 are separated by 228 nucleotidesHMPREF1078_RS14170 and HMPREF1078_RS14175 are separated by 192 nucleotides HMPREF1078_RS14160: HMPREF1078_RS14160 - endonuclease/exonuclease/phosphatase family protein, at 304,477 to 305,493 _RS14160 HMPREF1078_RS14165: HMPREF1078_RS14165 - Rne/Rng family ribonuclease, at 305,554 to 307,134 _RS14165 HMPREF1078_RS14170: HMPREF1078_RS14170 - HU family DNA-binding protein, at 307,363 to 307,635 _RS14170 HMPREF1078_RS14175: HMPREF1078_RS14175 - A/G-specific adenine glycosylase, at 307,828 to 308,913 _RS14175 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 304.640 kb on - strand, within HMPREF1078_RS14160at 304.643 kb on + strand, within HMPREF1078_RS14160at 304.643 kb on + strand, within HMPREF1078_RS14160at 304.643 kb on + strand, within HMPREF1078_RS14160at 304.644 kb on - strand, within HMPREF1078_RS14160at 304.646 kb on + strand, within HMPREF1078_RS14160at 304.647 kb on - strand, within HMPREF1078_RS14160at 304.647 kb on - strand, within HMPREF1078_RS14160at 304.776 kb on - strand, within HMPREF1078_RS14160at 304.776 kb on - strand, within HMPREF1078_RS14160at 304.799 kb on + strand, within HMPREF1078_RS14160at 304.799 kb on + strand, within HMPREF1078_RS14160at 304.800 kb on - strand, within HMPREF1078_RS14160at 304.805 kb on - strand, within HMPREF1078_RS14160at 304.829 kb on - strand, within HMPREF1078_RS14160at 304.912 kb on + strand, within HMPREF1078_RS14160at 305.076 kb on - strand, within HMPREF1078_RS14160at 305.083 kb on - strand, within HMPREF1078_RS14160at 305.100 kb on + strand, within HMPREF1078_RS14160at 305.102 kb on + strand, within HMPREF1078_RS14160at 305.103 kb on - strand, within HMPREF1078_RS14160at 305.103 kb on - strand, within HMPREF1078_RS14160at 305.103 kb on - strand, within HMPREF1078_RS14160at 305.107 kb on + strand, within HMPREF1078_RS14160at 305.108 kb on - strand, within HMPREF1078_RS14160at 305.143 kb on + strand, within HMPREF1078_RS14160at 305.144 kb on - strand, within HMPREF1078_RS14160at 305.144 kb on - strand, within HMPREF1078_RS14160at 305.185 kb on + strand, within HMPREF1078_RS14160at 305.185 kb on + strand, within HMPREF1078_RS14160at 305.235 kb on - strand, within HMPREF1078_RS14160at 305.320 kb on + strand, within HMPREF1078_RS14160at 305.321 kb on - strand, within HMPREF1078_RS14160at 305.321 kb on - strand, within HMPREF1078_RS14160at 305.405 kb on - strandat 305.481 kb on - strandat 305.550 kb on + strandat 305.550 kb on + strandat 305.550 kb on + strandat 305.550 kb on + strandat 305.551 kb on - strandat 305.551 kb on - strandat 305.555 kb on + strandat 305.555 kb on + strandat 305.656 kb on - strandat 305.726 kb on + strand, within HMPREF1078_RS14165at 305.727 kb on - strand, within HMPREF1078_RS14165at 305.735 kb on - strand, within HMPREF1078_RS14165at 305.735 kb on - strand, within HMPREF1078_RS14165at 305.735 kb on - strand, within HMPREF1078_RS14165at 305.805 kb on - strand, within HMPREF1078_RS14165at 305.806 kb on - strand, within HMPREF1078_RS14165at 305.865 kb on + strand, within HMPREF1078_RS14165at 305.865 kb on + strand, within HMPREF1078_RS14165at 305.866 kb on - strand, within HMPREF1078_RS14165at 307.152 kb on - strandat 307.152 kb on - strandat 307.167 kb on - strandat 307.170 kb on - strandat 307.174 kb on - strandat 307.174 kb on - strandat 307.206 kb on - strandat 307.206 kb on - strandat 307.206 kb on - strandat 307.206 kb on - strandat 307.206 kb on - strandat 307.239 kb on - strandat 307.239 kb on - strandat 307.239 kb on - strandat 307.239 kb on - strandat 307.249 kb on - strandat 307.249 kb on - strandat 307.255 kb on - strandat 307.255 kb on - strandat 307.255 kb on - strandat 307.297 kb on - strandat 307.297 kb on - strandat 307.297 kb on - strandat 307.351 kb on - strandat 307.351 kb on - strandat 307.353 kb on - strandat 307.360 kb on - strandat 307.365 kb on - strandat 307.655 kb on - strandat 307.692 kb on - strandat 307.694 kb on - strandat 307.755 kb on - strandat 307.774 kb on + strandat 307.786 kb on - strandat 307.794 kb on - strandat 307.794 kb on - strandat 307.827 kb on + strandat 307.827 kb on + strandat 307.891 kb on - strandat 307.927 kb on + strandat 307.927 kb on + strandat 307.930 kb on - strandat 307.930 kb on - strandat 307.988 kb on - strand, within HMPREF1078_RS14175at 307.988 kb on - strand, within HMPREF1078_RS14175at 308.084 kb on - strand, within HMPREF1078_RS14175at 308.084 kb on - strand, within HMPREF1078_RS14175

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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304,640 - HMPREF1078_RS14160 0.16 -1.0
304,643 + HMPREF1078_RS14160 0.16 -0.1
304,643 + HMPREF1078_RS14160 0.16 +0.8
304,643 + HMPREF1078_RS14160 0.16 -1.1
304,644 - HMPREF1078_RS14160 0.16 -0.6
304,646 + HMPREF1078_RS14160 0.17 +0.4
304,647 - HMPREF1078_RS14160 0.17 -4.0
304,647 - HMPREF1078_RS14160 0.17 -0.3
304,776 - HMPREF1078_RS14160 0.29 -0.1
304,776 - HMPREF1078_RS14160 0.29 -0.6
304,799 + HMPREF1078_RS14160 0.32 -1.4
304,799 + HMPREF1078_RS14160 0.32 -0.5
304,800 - HMPREF1078_RS14160 0.32 +0.4
304,805 - HMPREF1078_RS14160 0.32 -0.4
304,829 - HMPREF1078_RS14160 0.35 -0.3
304,912 + HMPREF1078_RS14160 0.43 -0.2
305,076 - HMPREF1078_RS14160 0.59 -0.3
305,083 - HMPREF1078_RS14160 0.60 -0.1
305,100 + HMPREF1078_RS14160 0.61 -0.3
305,102 + HMPREF1078_RS14160 0.61 -0.2
305,103 - HMPREF1078_RS14160 0.62 +0.5
305,103 - HMPREF1078_RS14160 0.62 -0.4
305,103 - HMPREF1078_RS14160 0.62 +1.1
305,107 + HMPREF1078_RS14160 0.62 -0.9
305,108 - HMPREF1078_RS14160 0.62 -1.2
305,143 + HMPREF1078_RS14160 0.65 +0.4
305,144 - HMPREF1078_RS14160 0.66 -0.4
305,144 - HMPREF1078_RS14160 0.66 -0.4
305,185 + HMPREF1078_RS14160 0.70 +0.4
305,185 + HMPREF1078_RS14160 0.70 -0.9
305,235 - HMPREF1078_RS14160 0.75 -0.6
305,320 + HMPREF1078_RS14160 0.83 -0.9
305,321 - HMPREF1078_RS14160 0.83 -0.0
305,321 - HMPREF1078_RS14160 0.83 -0.5
305,405 - -0.6
305,481 - -0.3
305,550 + -0.0
305,550 + +0.5
305,550 + -0.3
305,550 + -0.9
305,551 - +1.4
305,551 - -0.9
305,555 + +3.3
305,555 + -1.7
305,656 - -0.8
305,726 + HMPREF1078_RS14165 0.11 +1.5
305,727 - HMPREF1078_RS14165 0.11 +0.2
305,735 - HMPREF1078_RS14165 0.11 +0.9
305,735 - HMPREF1078_RS14165 0.11 -0.6
305,735 - HMPREF1078_RS14165 0.11 -1.3
305,805 - HMPREF1078_RS14165 0.16 -1.2
305,806 - HMPREF1078_RS14165 0.16 -1.3
305,865 + HMPREF1078_RS14165 0.20 -0.9
305,865 + HMPREF1078_RS14165 0.20 -0.5
305,866 - HMPREF1078_RS14165 0.20 +0.1
307,152 - +1.0
307,152 - -0.1
307,167 - +0.6
307,170 - -0.9
307,174 - +0.9
307,174 - -0.8
307,206 - -0.1
307,206 - -1.0
307,206 - -0.9
307,206 - -0.8
307,206 - -0.6
307,239 - -1.6
307,239 - -0.2
307,239 - -1.4
307,239 - +0.2
307,249 - -1.7
307,249 - +0.7
307,255 - -2.4
307,255 - +0.2
307,255 - +0.3
307,297 - -0.7
307,297 - -0.8
307,297 - -0.3
307,351 - -0.0
307,351 - +0.3
307,353 - -1.4
307,360 - -0.6
307,365 - +2.3
307,655 - -0.0
307,692 - +0.4
307,694 - +1.8
307,755 - +0.1
307,774 + -0.1
307,786 - -0.6
307,794 - -0.4
307,794 - +1.1
307,827 + -1.2
307,827 + +1.5
307,891 - -0.7
307,927 + -0.3
307,927 + +0.3
307,930 - +0.7
307,930 - -1.1
307,988 - HMPREF1078_RS14175 0.15 +0.8
307,988 - HMPREF1078_RS14175 0.15 +1.0
308,084 - HMPREF1078_RS14175 0.24 -1.1
308,084 - HMPREF1078_RS14175 0.24 -1.9

Or see this region's nucleotide sequence