Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13965 and HMPREF1078_RS13970 are separated by 44 nucleotides HMPREF1078_RS13970 and HMPREF1078_RS13975 are separated by 582 nucleotides
HMPREF1078_RS13965: HMPREF1078_RS13965 - AIR synthase-related protein, at 250,508 to 251,680
_RS13965
HMPREF1078_RS13970: HMPREF1078_RS13970 - glucosaminidase domain-containing protein, at 251,725 to 252,627
_RS13970
HMPREF1078_RS13975: HMPREF1078_RS13975 - cytidine deaminase, at 253,210 to 253,686
_RS13975
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 251.708 kb on - strand at 251.722 kb on + strand at 251.723 kb on - strand at 251.723 kb on - strand at 251.723 kb on - strand at 251.727 kb on - strand at 251.738 kb on - strand at 251.738 kb on - strand at 251.787 kb on + strand at 251.789 kb on + strand at 251.789 kb on + strand at 251.790 kb on - strand at 251.791 kb on + strand at 251.791 kb on + strand at 251.791 kb on + strand at 251.792 kb on - strand at 251.807 kb on - strand at 251.807 kb on - strand at 251.814 kb on - strand at 251.851 kb on + strand, within HMPREF1078_RS13970 at 251.851 kb on + strand, within HMPREF1078_RS13970 at 251.865 kb on - strand, within HMPREF1078_RS13970 at 251.865 kb on - strand, within HMPREF1078_RS13970 at 251.903 kb on + strand, within HMPREF1078_RS13970 at 252.029 kb on + strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.030 kb on - strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.057 kb on + strand, within HMPREF1078_RS13970 at 252.058 kb on - strand, within HMPREF1078_RS13970 at 252.058 kb on - strand, within HMPREF1078_RS13970 at 252.117 kb on - strand, within HMPREF1078_RS13970 at 252.131 kb on + strand, within HMPREF1078_RS13970 at 252.131 kb on + strand, within HMPREF1078_RS13970 at 252.216 kb on + strand, within HMPREF1078_RS13970 at 252.217 kb on - strand, within HMPREF1078_RS13970 at 252.232 kb on - strand, within HMPREF1078_RS13970 at 252.351 kb on - strand, within HMPREF1078_RS13970 at 252.466 kb on - strand, within HMPREF1078_RS13970 at 252.478 kb on - strand, within HMPREF1078_RS13970 at 252.481 kb on + strand, within HMPREF1078_RS13970 at 252.527 kb on + strand, within HMPREF1078_RS13970 at 252.614 kb on - strand at 252.641 kb on + strand at 252.642 kb on - strand at 252.642 kb on - strand at 252.645 kb on + strand at 252.645 kb on + strand at 252.645 kb on + strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.646 kb on - strand at 252.671 kb on + strand at 252.729 kb on + strand at 252.780 kb on - strand at 252.958 kb on + strand at 252.959 kb on - strand at 252.959 kb on - strand at 252.985 kb on + strand at 252.985 kb on + strand at 252.991 kb on + strand at 252.992 kb on - strand at 253.134 kb on - strand at 253.134 kb on - strand at 253.189 kb on + strand at 253.189 kb on + strand at 253.189 kb on + strand at 253.205 kb on - strand at 253.284 kb on - strand, within HMPREF1078_RS13975 at 253.318 kb on + strand, within HMPREF1078_RS13975 at 253.390 kb on - strand, within HMPREF1078_RS13975
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 251,708 - -0.2 251,722 + -0.5 251,723 - -0.1 251,723 - +0.4 251,723 - -0.1 251,727 - -1.0 251,738 - -0.4 251,738 - +0.1 251,787 + -2.1 251,789 + -1.7 251,789 + +0.2 251,790 - +0.3 251,791 + +1.8 251,791 + -0.4 251,791 + -1.4 251,792 - -1.1 251,807 - +0.5 251,807 - -2.7 251,814 - +2.8 251,851 + HMPREF1078_RS13970 0.14 +0.2 251,851 + HMPREF1078_RS13970 0.14 -0.2 251,865 - HMPREF1078_RS13970 0.16 +0.2 251,865 - HMPREF1078_RS13970 0.16 -0.7 251,903 + HMPREF1078_RS13970 0.20 -1.4 252,029 + HMPREF1078_RS13970 0.34 +0.2 252,030 - HMPREF1078_RS13970 0.34 +0.3 252,030 - HMPREF1078_RS13970 0.34 +0.3 252,030 - HMPREF1078_RS13970 0.34 -1.9 252,057 + HMPREF1078_RS13970 0.37 +1.7 252,057 + HMPREF1078_RS13970 0.37 -0.4 252,057 + HMPREF1078_RS13970 0.37 -0.8 252,057 + HMPREF1078_RS13970 0.37 -1.1 252,057 + HMPREF1078_RS13970 0.37 +0.2 252,058 - HMPREF1078_RS13970 0.37 -2.0 252,058 - HMPREF1078_RS13970 0.37 +0.2 252,117 - HMPREF1078_RS13970 0.43 -1.2 252,131 + HMPREF1078_RS13970 0.45 -0.2 252,131 + HMPREF1078_RS13970 0.45 +1.3 252,216 + HMPREF1078_RS13970 0.54 -0.8 252,217 - HMPREF1078_RS13970 0.54 +2.5 252,232 - HMPREF1078_RS13970 0.56 +0.5 252,351 - HMPREF1078_RS13970 0.69 -1.8 252,466 - HMPREF1078_RS13970 0.82 -1.1 252,478 - HMPREF1078_RS13970 0.83 -1.4 252,481 + HMPREF1078_RS13970 0.84 -0.3 252,527 + HMPREF1078_RS13970 0.89 -1.2 252,614 - -1.3 252,641 + -0.0 252,642 - -0.5 252,642 - +0.8 252,645 + +2.2 252,645 + -0.8 252,645 + +1.3 252,646 - +1.5 252,646 - +0.5 252,646 - -0.8 252,646 - +0.9 252,646 - -0.4 252,646 - -0.6 252,671 + +1.3 252,729 + +0.3 252,780 - +0.7 252,958 + -0.9 252,959 - -0.9 252,959 - -0.5 252,985 + +0.8 252,985 + +0.8 252,991 + +0.7 252,992 - +0.3 253,134 - +0.1 253,134 - -1.2 253,189 + +0.5 253,189 + -2.2 253,189 + +0.7 253,205 - +0.3 253,284 - HMPREF1078_RS13975 0.16 -2.7 253,318 + HMPREF1078_RS13975 0.23 -0.5 253,390 - HMPREF1078_RS13975 0.38 +1.8
Or see this region's nucleotide sequence