Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13905 and HMPREF1078_RS13910 are separated by 38 nucleotides HMPREF1078_RS13910 and HMPREF1078_RS13915 are separated by 11 nucleotides HMPREF1078_RS13915 and HMPREF1078_RS13920 are separated by 150 nucleotides HMPREF1078_RS13920 and HMPREF1078_RS13925 are separated by 8 nucleotides
HMPREF1078_RS13905: HMPREF1078_RS13905 - flotillin-like protein FloA, at 239,154 to 240,146
_RS13905
HMPREF1078_RS13910: HMPREF1078_RS13910 - NfeD family protein, at 240,185 to 240,655
_RS13910
HMPREF1078_RS13915: HMPREF1078_RS13915 - tetratricopeptide repeat protein, at 240,667 to 242,106
_RS13915
HMPREF1078_RS13920: HMPREF1078_RS13920 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 242,257 to 243,012
_RS13920
HMPREF1078_RS13925: HMPREF1078_RS13925 - DMT family protein, at 243,021 to 243,392
_RS13925
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 240.019 kb on - strand, within HMPREF1078_RS13905 at 240.019 kb on - strand, within HMPREF1078_RS13905 at 240.076 kb on + strand at 240.077 kb on - strand at 240.080 kb on - strand at 240.090 kb on + strand at 240.091 kb on - strand at 240.129 kb on + strand at 240.207 kb on - strand at 240.207 kb on - strand at 240.213 kb on + strand at 240.214 kb on - strand at 240.228 kb on - strand at 240.228 kb on - strand at 240.228 kb on - strand at 240.230 kb on + strand at 240.281 kb on + strand, within HMPREF1078_RS13910 at 240.282 kb on - strand, within HMPREF1078_RS13910 at 240.513 kb on + strand, within HMPREF1078_RS13910 at 240.513 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.614 kb on + strand at 240.623 kb on + strand at 240.624 kb on - strand at 240.634 kb on + strand at 240.638 kb on - strand at 240.638 kb on - strand at 240.655 kb on + strand at 240.655 kb on + strand at 240.655 kb on + strand at 240.656 kb on - strand at 240.656 kb on - strand at 240.668 kb on + strand at 240.816 kb on - strand, within HMPREF1078_RS13915 at 240.933 kb on - strand, within HMPREF1078_RS13915 at 240.933 kb on - strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.940 kb on - strand, within HMPREF1078_RS13915 at 240.943 kb on - strand, within HMPREF1078_RS13915 at 240.943 kb on - strand, within HMPREF1078_RS13915 at 240.945 kb on + strand, within HMPREF1078_RS13915 at 240.954 kb on + strand, within HMPREF1078_RS13915 at 240.989 kb on + strand, within HMPREF1078_RS13915 at 240.994 kb on + strand, within HMPREF1078_RS13915 at 240.995 kb on - strand, within HMPREF1078_RS13915 at 241.093 kb on + strand, within HMPREF1078_RS13915 at 241.094 kb on - strand, within HMPREF1078_RS13915 at 241.180 kb on + strand, within HMPREF1078_RS13915 at 241.221 kb on + strand, within HMPREF1078_RS13915 at 241.222 kb on - strand, within HMPREF1078_RS13915 at 241.224 kb on - strand, within HMPREF1078_RS13915 at 241.274 kb on + strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.296 kb on - strand, within HMPREF1078_RS13915 at 241.317 kb on - strand, within HMPREF1078_RS13915 at 241.352 kb on + strand, within HMPREF1078_RS13915 at 241.352 kb on + strand, within HMPREF1078_RS13915 at 241.386 kb on - strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.421 kb on - strand, within HMPREF1078_RS13915 at 241.450 kb on - strand, within HMPREF1078_RS13915 at 241.503 kb on - strand, within HMPREF1078_RS13915 at 241.505 kb on + strand, within HMPREF1078_RS13915 at 241.506 kb on - strand, within HMPREF1078_RS13915 at 241.577 kb on + strand, within HMPREF1078_RS13915 at 241.577 kb on + strand, within HMPREF1078_RS13915 at 241.606 kb on + strand, within HMPREF1078_RS13915 at 241.611 kb on + strand, within HMPREF1078_RS13915 at 241.613 kb on + strand, within HMPREF1078_RS13915 at 241.613 kb on + strand, within HMPREF1078_RS13915 at 241.614 kb on - strand, within HMPREF1078_RS13915 at 241.614 kb on - strand, within HMPREF1078_RS13915 at 241.651 kb on - strand, within HMPREF1078_RS13915 at 241.654 kb on + strand, within HMPREF1078_RS13915 at 241.654 kb on + strand, within HMPREF1078_RS13915 at 241.655 kb on - strand, within HMPREF1078_RS13915 at 241.655 kb on - strand, within HMPREF1078_RS13915 at 241.764 kb on + strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.767 kb on - strand, within HMPREF1078_RS13915 at 241.767 kb on - strand, within HMPREF1078_RS13915 at 241.802 kb on + strand, within HMPREF1078_RS13915 at 241.802 kb on + strand, within HMPREF1078_RS13915 at 241.806 kb on - strand, within HMPREF1078_RS13915 at 241.814 kb on + strand, within HMPREF1078_RS13915 at 241.815 kb on - strand, within HMPREF1078_RS13915 at 241.815 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.830 kb on - strand, within HMPREF1078_RS13915 at 241.835 kb on + strand, within HMPREF1078_RS13915 at 241.847 kb on - strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.865 kb on - strand, within HMPREF1078_RS13915 at 241.923 kb on - strand, within HMPREF1078_RS13915 at 241.933 kb on - strand, within HMPREF1078_RS13915 at 241.935 kb on - strand, within HMPREF1078_RS13915 at 241.998 kb on + strand at 241.998 kb on + strand at 241.999 kb on - strand at 242.091 kb on + strand at 242.091 kb on + strand at 242.091 kb on + strand at 242.113 kb on - strand at 242.120 kb on - strand at 242.120 kb on - strand at 242.140 kb on - strand at 242.155 kb on - strand at 242.249 kb on - strand at 242.251 kb on + strand at 242.251 kb on + strand at 242.297 kb on + strand at 242.330 kb on - strand at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.356 kb on - strand, within HMPREF1078_RS13920 at 242.426 kb on + strand, within HMPREF1078_RS13920 at 242.427 kb on - strand, within HMPREF1078_RS13920 at 242.427 kb on - strand, within HMPREF1078_RS13920 at 242.461 kb on - strand, within HMPREF1078_RS13920 at 242.476 kb on - strand, within HMPREF1078_RS13920 at 242.482 kb on + strand, within HMPREF1078_RS13920 at 242.686 kb on - strand, within HMPREF1078_RS13920 at 242.686 kb on - strand, within HMPREF1078_RS13920 at 242.761 kb on - strand, within HMPREF1078_RS13920 at 242.903 kb on + strand, within HMPREF1078_RS13920 at 242.944 kb on - strand at 242.958 kb on + strand at 242.958 kb on + strand at 242.959 kb on - strand at 242.959 kb on - strand at 242.981 kb on - strand at 242.994 kb on + strand at 243.003 kb on + strand at 243.004 kb on - strand at 243.010 kb on + strand at 243.038 kb on + strand at 243.039 kb on - strand at 243.046 kb on + strand at 243.063 kb on - strand, within HMPREF1078_RS13925 at 243.068 kb on + strand, within HMPREF1078_RS13925 at 243.069 kb on - strand, within HMPREF1078_RS13925
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 239,902 + HMPREF1078_RS13905 0.75 -0.3 239,902 + HMPREF1078_RS13905 0.75 -0.0 239,902 + HMPREF1078_RS13905 0.75 +3.5 240,019 - HMPREF1078_RS13905 0.87 +0.5 240,019 - HMPREF1078_RS13905 0.87 -0.5 240,076 + -0.6 240,077 - -0.9 240,080 - -0.1 240,090 + +0.5 240,091 - -0.3 240,129 + -1.5 240,207 - +0.9 240,207 - +0.5 240,213 + -0.5 240,214 - +0.7 240,228 - -0.7 240,228 - -2.2 240,228 - -0.0 240,230 + +0.0 240,281 + HMPREF1078_RS13910 0.20 -1.3 240,282 - HMPREF1078_RS13910 0.21 +0.3 240,513 + HMPREF1078_RS13910 0.70 +0.3 240,513 + HMPREF1078_RS13910 0.70 -0.4 240,519 + HMPREF1078_RS13910 0.71 +0.5 240,519 + HMPREF1078_RS13910 0.71 -0.2 240,519 + HMPREF1078_RS13910 0.71 -0.1 240,520 - HMPREF1078_RS13910 0.71 -1.2 240,520 - HMPREF1078_RS13910 0.71 -1.7 240,520 - HMPREF1078_RS13910 0.71 +0.2 240,520 - HMPREF1078_RS13910 0.71 +0.8 240,614 + +0.2 240,623 + +0.2 240,624 - -0.9 240,634 + +0.2 240,638 - +0.0 240,638 - -0.9 240,655 + -0.3 240,655 + +0.1 240,655 + +0.3 240,656 - -0.3 240,656 - -0.3 240,668 + -0.8 240,816 - HMPREF1078_RS13915 0.10 +0.3 240,933 - HMPREF1078_RS13915 0.18 +1.1 240,933 - HMPREF1078_RS13915 0.18 -0.4 240,939 + HMPREF1078_RS13915 0.19 -0.5 240,939 + HMPREF1078_RS13915 0.19 +0.2 240,939 + HMPREF1078_RS13915 0.19 -1.9 240,940 - HMPREF1078_RS13915 0.19 -0.4 240,943 - HMPREF1078_RS13915 0.19 -1.2 240,943 - HMPREF1078_RS13915 0.19 -1.8 240,945 + HMPREF1078_RS13915 0.19 +0.2 240,954 + HMPREF1078_RS13915 0.20 -0.3 240,989 + HMPREF1078_RS13915 0.22 +0.7 240,994 + HMPREF1078_RS13915 0.23 -1.6 240,995 - HMPREF1078_RS13915 0.23 +1.1 241,093 + HMPREF1078_RS13915 0.30 -0.9 241,094 - HMPREF1078_RS13915 0.30 -1.6 241,180 + HMPREF1078_RS13915 0.36 -0.1 241,221 + HMPREF1078_RS13915 0.38 -0.9 241,222 - HMPREF1078_RS13915 0.39 +1.6 241,224 - HMPREF1078_RS13915 0.39 +0.2 241,274 + HMPREF1078_RS13915 0.42 -1.1 241,275 - HMPREF1078_RS13915 0.42 -0.9 241,275 - HMPREF1078_RS13915 0.42 -1.5 241,275 - HMPREF1078_RS13915 0.42 -2.6 241,275 - HMPREF1078_RS13915 0.42 +0.1 241,296 - HMPREF1078_RS13915 0.44 +0.0 241,317 - HMPREF1078_RS13915 0.45 -0.8 241,352 + HMPREF1078_RS13915 0.48 +2.9 241,352 + HMPREF1078_RS13915 0.48 -2.1 241,386 - HMPREF1078_RS13915 0.50 -0.7 241,420 + HMPREF1078_RS13915 0.52 +1.4 241,420 + HMPREF1078_RS13915 0.52 -0.5 241,420 + HMPREF1078_RS13915 0.52 -0.6 241,421 - HMPREF1078_RS13915 0.52 -1.8 241,450 - HMPREF1078_RS13915 0.54 +0.4 241,503 - HMPREF1078_RS13915 0.58 +0.1 241,505 + HMPREF1078_RS13915 0.58 -0.7 241,506 - HMPREF1078_RS13915 0.58 +0.3 241,577 + HMPREF1078_RS13915 0.63 +0.1 241,577 + HMPREF1078_RS13915 0.63 -0.2 241,606 + HMPREF1078_RS13915 0.65 -0.3 241,611 + HMPREF1078_RS13915 0.66 -0.9 241,613 + HMPREF1078_RS13915 0.66 -1.5 241,613 + HMPREF1078_RS13915 0.66 -1.7 241,614 - HMPREF1078_RS13915 0.66 +0.5 241,614 - HMPREF1078_RS13915 0.66 -1.2 241,651 - HMPREF1078_RS13915 0.68 -1.4 241,654 + HMPREF1078_RS13915 0.69 +0.3 241,654 + HMPREF1078_RS13915 0.69 -0.7 241,655 - HMPREF1078_RS13915 0.69 -0.9 241,655 - HMPREF1078_RS13915 0.69 -0.9 241,764 + HMPREF1078_RS13915 0.76 -0.7 241,765 - HMPREF1078_RS13915 0.76 -2.1 241,765 - HMPREF1078_RS13915 0.76 -0.9 241,765 - HMPREF1078_RS13915 0.76 +0.7 241,767 - HMPREF1078_RS13915 0.76 -1.7 241,767 - HMPREF1078_RS13915 0.76 -0.2 241,802 + HMPREF1078_RS13915 0.79 +2.5 241,802 + HMPREF1078_RS13915 0.79 +0.1 241,806 - HMPREF1078_RS13915 0.79 -0.8 241,814 + HMPREF1078_RS13915 0.80 -1.9 241,815 - HMPREF1078_RS13915 0.80 +0.5 241,815 - HMPREF1078_RS13915 0.80 -0.9 241,828 - HMPREF1078_RS13915 0.81 +0.2 241,828 - HMPREF1078_RS13915 0.81 -1.8 241,828 - HMPREF1078_RS13915 0.81 -1.0 241,828 - HMPREF1078_RS13915 0.81 -0.5 241,830 - HMPREF1078_RS13915 0.81 -0.9 241,835 + HMPREF1078_RS13915 0.81 -0.3 241,847 - HMPREF1078_RS13915 0.82 -0.1 241,864 + HMPREF1078_RS13915 0.83 -0.1 241,864 + HMPREF1078_RS13915 0.83 -0.9 241,864 + HMPREF1078_RS13915 0.83 -2.7 241,865 - HMPREF1078_RS13915 0.83 +1.4 241,923 - HMPREF1078_RS13915 0.87 +0.9 241,933 - HMPREF1078_RS13915 0.88 +0.3 241,935 - HMPREF1078_RS13915 0.88 -1.0 241,998 + -0.8 241,998 + +0.8 241,999 - +0.6 242,091 + -0.3 242,091 + -0.3 242,091 + -1.4 242,113 - -0.5 242,120 - -0.9 242,120 - -2.1 242,140 - +0.4 242,155 - -0.6 242,249 - +0.3 242,251 + +0.5 242,251 + +2.1 242,297 + +1.9 242,330 - -1.4 242,355 + HMPREF1078_RS13920 0.13 +1.0 242,355 + HMPREF1078_RS13920 0.13 +0.3 242,355 + HMPREF1078_RS13920 0.13 -0.8 242,356 - HMPREF1078_RS13920 0.13 -0.8 242,426 + HMPREF1078_RS13920 0.22 +0.1 242,427 - HMPREF1078_RS13920 0.22 +0.3 242,427 - HMPREF1078_RS13920 0.22 -0.1 242,461 - HMPREF1078_RS13920 0.27 +1.8 242,476 - HMPREF1078_RS13920 0.29 +1.1 242,482 + HMPREF1078_RS13920 0.30 -1.5 242,686 - HMPREF1078_RS13920 0.57 +0.2 242,686 - HMPREF1078_RS13920 0.57 -0.7 242,761 - HMPREF1078_RS13920 0.67 -1.0 242,903 + HMPREF1078_RS13920 0.85 -0.8 242,944 - +2.5 242,958 + -1.9 242,958 + +1.1 242,959 - -0.6 242,959 - -0.3 242,981 - -0.0 242,994 + +0.6 243,003 + -0.3 243,004 - +0.1 243,010 + -0.9 243,038 + +0.5 243,039 - +0.5 243,046 + +0.2 243,063 - HMPREF1078_RS13925 0.11 +0.4 243,068 + HMPREF1078_RS13925 0.13 +0.4 243,069 - HMPREF1078_RS13925 0.13 +0.7
Or see this region's nucleotide sequence