Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13300 and HMPREF1078_RS13305 are separated by 63 nucleotides HMPREF1078_RS13305 and HMPREF1078_RS13310 are separated by 82 nucleotides HMPREF1078_RS13310 and HMPREF1078_RS13315 overlap by 4 nucleotides HMPREF1078_RS13315 and HMPREF1078_RS13320 are separated by 80 nucleotides
HMPREF1078_RS13300: HMPREF1078_RS13300 - sulfatase, at 92,056 to 93,630
_RS13300
HMPREF1078_RS13305: HMPREF1078_RS13305 - tRNA-Ala, at 93,694 to 93,767
_RS13305
HMPREF1078_RS13310: HMPREF1078_RS13310 - DUF4286 family protein, at 93,850 to 94,164
_RS13310
HMPREF1078_RS13315: HMPREF1078_RS13315 - crossover junction endodeoxyribonuclease RuvC, at 94,161 to 94,718
_RS13315
HMPREF1078_RS13320: HMPREF1078_RS13320 - NADP-specific glutamate dehydrogenase, at 94,799 to 96,133
_RS13320
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.871 kb on + strand, within HMPREF1078_RS13300 at 92.872 kb on - strand, within HMPREF1078_RS13300 at 92.930 kb on + strand, within HMPREF1078_RS13300 at 92.931 kb on + strand, within HMPREF1078_RS13300 at 92.931 kb on + strand, within HMPREF1078_RS13300 at 92.932 kb on - strand, within HMPREF1078_RS13300 at 92.932 kb on - strand, within HMPREF1078_RS13300 at 92.932 kb on - strand, within HMPREF1078_RS13300 at 92.934 kb on + strand, within HMPREF1078_RS13300 at 92.989 kb on + strand, within HMPREF1078_RS13300 at 92.990 kb on - strand, within HMPREF1078_RS13300 at 92.998 kb on + strand, within HMPREF1078_RS13300 at 92.998 kb on + strand, within HMPREF1078_RS13300 at 92.998 kb on + strand, within HMPREF1078_RS13300 at 92.998 kb on + strand, within HMPREF1078_RS13300 at 92.998 kb on + strand, within HMPREF1078_RS13300 at 92.999 kb on - strand, within HMPREF1078_RS13300 at 93.011 kb on - strand, within HMPREF1078_RS13300 at 93.013 kb on - strand, within HMPREF1078_RS13300 at 93.045 kb on - strand, within HMPREF1078_RS13300 at 93.064 kb on - strand, within HMPREF1078_RS13300 at 93.090 kb on + strand, within HMPREF1078_RS13300 at 93.091 kb on - strand, within HMPREF1078_RS13300 at 93.091 kb on - strand, within HMPREF1078_RS13300 at 93.124 kb on + strand, within HMPREF1078_RS13300 at 93.124 kb on + strand, within HMPREF1078_RS13300 at 93.124 kb on + strand, within HMPREF1078_RS13300 at 93.125 kb on - strand, within HMPREF1078_RS13300 at 93.125 kb on - strand, within HMPREF1078_RS13300 at 93.125 kb on - strand, within HMPREF1078_RS13300 at 93.163 kb on + strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.313 kb on + strand, within HMPREF1078_RS13300 at 93.313 kb on + strand, within HMPREF1078_RS13300 at 93.314 kb on - strand, within HMPREF1078_RS13300 at 93.348 kb on - strand, within HMPREF1078_RS13300 at 93.362 kb on + strand, within HMPREF1078_RS13300 at 93.365 kb on - strand, within HMPREF1078_RS13300 at 93.401 kb on + strand, within HMPREF1078_RS13300 at 93.441 kb on - strand, within HMPREF1078_RS13300 at 93.452 kb on - strand, within HMPREF1078_RS13300 at 93.457 kb on + strand, within HMPREF1078_RS13300 at 93.479 kb on - strand at 93.513 kb on + strand at 93.513 kb on + strand at 93.514 kb on - strand at 93.514 kb on - strand at 93.514 kb on - strand at 93.517 kb on + strand at 93.628 kb on + strand at 93.628 kb on + strand at 93.634 kb on - strand at 93.677 kb on + strand at 93.677 kb on + strand at 93.678 kb on - strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.682 kb on - strand at 93.687 kb on - strand at 93.701 kb on + strand at 93.701 kb on + strand at 93.746 kb on + strand, within HMPREF1078_RS13305 at 93.747 kb on - strand, within HMPREF1078_RS13305 at 93.747 kb on - strand, within HMPREF1078_RS13305 at 93.759 kb on + strand, within HMPREF1078_RS13305 at 93.759 kb on + strand, within HMPREF1078_RS13305 at 93.760 kb on - strand at 93.793 kb on - strand at 93.809 kb on + strand at 93.811 kb on + strand at 93.811 kb on + strand at 93.811 kb on + strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.847 kb on - strand at 93.864 kb on + strand at 93.865 kb on - strand at 93.865 kb on - strand at 93.865 kb on - strand at 93.877 kb on - strand at 93.922 kb on + strand, within HMPREF1078_RS13310 at 93.925 kb on + strand, within HMPREF1078_RS13310 at 93.956 kb on + strand, within HMPREF1078_RS13310 at 94.077 kb on + strand, within HMPREF1078_RS13310 at 94.078 kb on - strand, within HMPREF1078_RS13310 at 94.114 kb on - strand, within HMPREF1078_RS13310 at 94.131 kb on + strand, within HMPREF1078_RS13310 at 94.136 kb on + strand at 94.137 kb on - strand at 94.137 kb on - strand at 94.148 kb on + strand at 94.148 kb on + strand at 94.149 kb on - strand at 94.180 kb on + strand at 94.259 kb on + strand, within HMPREF1078_RS13315 at 94.260 kb on - strand, within HMPREF1078_RS13315 at 94.280 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.347 kb on + strand, within HMPREF1078_RS13315 at 94.348 kb on - strand, within HMPREF1078_RS13315 at 94.396 kb on + strand, within HMPREF1078_RS13315 at 94.397 kb on - strand, within HMPREF1078_RS13315 at 94.403 kb on + strand, within HMPREF1078_RS13315 at 94.403 kb on + strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.476 kb on + strand, within HMPREF1078_RS13315 at 94.550 kb on - strand, within HMPREF1078_RS13315 at 94.550 kb on - strand, within HMPREF1078_RS13315 at 94.742 kb on - strand at 94.761 kb on + strand at 94.761 kb on + strand at 94.762 kb on - strand at 94.775 kb on + strand at 94.775 kb on + strand at 94.776 kb on - strand at 94.776 kb on - strand at 94.779 kb on + strand at 94.779 kb on + strand at 94.779 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.782 kb on - strand at 94.800 kb on + strand at 94.800 kb on + strand at 94.800 kb on + strand at 94.802 kb on + strand at 94.869 kb on + strand at 94.869 kb on + strand at 94.870 kb on - strand at 94.875 kb on + strand at 94.876 kb on + strand at 94.876 kb on + strand at 94.877 kb on - strand at 94.877 kb on - strand at 94.878 kb on + strand at 94.878 kb on + strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.972 kb on + strand, within HMPREF1078_RS13320 at 94.972 kb on + strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 95.089 kb on + strand, within HMPREF1078_RS13320 at 95.089 kb on + strand, within HMPREF1078_RS13320 at 95.106 kb on - strand, within HMPREF1078_RS13320 at 95.114 kb on + strand, within HMPREF1078_RS13320
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 92,871 + HMPREF1078_RS13300 0.52 +0.1 92,872 - HMPREF1078_RS13300 0.52 -0.5 92,930 + HMPREF1078_RS13300 0.55 -0.3 92,931 + HMPREF1078_RS13300 0.56 +0.9 92,931 + HMPREF1078_RS13300 0.56 +0.1 92,932 - HMPREF1078_RS13300 0.56 -0.5 92,932 - HMPREF1078_RS13300 0.56 -0.9 92,932 - HMPREF1078_RS13300 0.56 -0.2 92,934 + HMPREF1078_RS13300 0.56 -0.6 92,989 + HMPREF1078_RS13300 0.59 +0.0 92,990 - HMPREF1078_RS13300 0.59 -0.8 92,998 + HMPREF1078_RS13300 0.60 -0.1 92,998 + HMPREF1078_RS13300 0.60 +0.4 92,998 + HMPREF1078_RS13300 0.60 -0.9 92,998 + HMPREF1078_RS13300 0.60 -0.0 92,998 + HMPREF1078_RS13300 0.60 -0.0 92,999 - HMPREF1078_RS13300 0.60 -0.1 93,011 - HMPREF1078_RS13300 0.61 +0.8 93,013 - HMPREF1078_RS13300 0.61 +1.0 93,045 - HMPREF1078_RS13300 0.63 -0.7 93,064 - HMPREF1078_RS13300 0.64 -0.0 93,090 + HMPREF1078_RS13300 0.66 +2.2 93,091 - HMPREF1078_RS13300 0.66 -0.7 93,091 - HMPREF1078_RS13300 0.66 +0.2 93,124 + HMPREF1078_RS13300 0.68 -0.9 93,124 + HMPREF1078_RS13300 0.68 -0.8 93,124 + HMPREF1078_RS13300 0.68 -1.4 93,125 - HMPREF1078_RS13300 0.68 +0.4 93,125 - HMPREF1078_RS13300 0.68 +0.5 93,125 - HMPREF1078_RS13300 0.68 +1.7 93,163 + HMPREF1078_RS13300 0.70 -1.0 93,164 - HMPREF1078_RS13300 0.70 +0.0 93,164 - HMPREF1078_RS13300 0.70 -1.1 93,164 - HMPREF1078_RS13300 0.70 -0.2 93,313 + HMPREF1078_RS13300 0.80 -1.4 93,313 + HMPREF1078_RS13300 0.80 -1.6 93,314 - HMPREF1078_RS13300 0.80 +0.4 93,348 - HMPREF1078_RS13300 0.82 +0.2 93,362 + HMPREF1078_RS13300 0.83 -1.2 93,365 - HMPREF1078_RS13300 0.83 -0.6 93,401 + HMPREF1078_RS13300 0.85 +0.2 93,441 - HMPREF1078_RS13300 0.88 -0.3 93,452 - HMPREF1078_RS13300 0.89 +0.9 93,457 + HMPREF1078_RS13300 0.89 -0.2 93,479 - +0.7 93,513 + -1.7 93,513 + -0.8 93,514 - -0.5 93,514 - +0.4 93,514 - -0.4 93,517 + -2.6 93,628 + -1.2 93,628 + -0.5 93,634 - -2.5 93,677 + -0.1 93,677 + +0.5 93,678 - -0.5 93,681 + -1.2 93,681 + +0.4 93,682 - +1.1 93,687 - +1.1 93,701 + +0.2 93,701 + +0.1 93,746 + HMPREF1078_RS13305 0.70 -0.6 93,747 - HMPREF1078_RS13305 0.72 -0.4 93,747 - HMPREF1078_RS13305 0.72 -0.2 93,759 + HMPREF1078_RS13305 0.88 -1.0 93,759 + HMPREF1078_RS13305 0.88 +0.3 93,760 - +0.2 93,793 - -0.5 93,809 + +1.7 93,811 + +2.5 93,811 + -0.2 93,811 + -1.0 93,812 - +0.2 93,812 - +0.9 93,812 - +1.5 93,812 - +2.5 93,847 - +0.1 93,864 + -1.4 93,865 - -1.7 93,865 - -1.4 93,865 - -0.5 93,877 - -0.6 93,922 + HMPREF1078_RS13310 0.23 -2.0 93,925 + HMPREF1078_RS13310 0.24 -0.8 93,956 + HMPREF1078_RS13310 0.34 +0.7 94,077 + HMPREF1078_RS13310 0.72 -0.6 94,078 - HMPREF1078_RS13310 0.72 -1.2 94,114 - HMPREF1078_RS13310 0.84 -0.6 94,131 + HMPREF1078_RS13310 0.89 -2.0 94,136 + -1.3 94,137 - -0.7 94,137 - +0.5 94,148 + +0.4 94,148 + -0.4 94,149 - +0.2 94,180 + -1.5 94,259 + HMPREF1078_RS13315 0.18 +0.3 94,260 - HMPREF1078_RS13315 0.18 -1.8 94,280 + HMPREF1078_RS13315 0.21 +0.2 94,296 + HMPREF1078_RS13315 0.24 -2.7 94,296 + HMPREF1078_RS13315 0.24 -1.7 94,296 + HMPREF1078_RS13315 0.24 +0.5 94,347 + HMPREF1078_RS13315 0.33 -1.5 94,348 - HMPREF1078_RS13315 0.34 -0.0 94,396 + HMPREF1078_RS13315 0.42 +1.0 94,397 - HMPREF1078_RS13315 0.42 -2.1 94,403 + HMPREF1078_RS13315 0.43 -0.4 94,403 + HMPREF1078_RS13315 0.43 -0.7 94,404 - HMPREF1078_RS13315 0.44 -1.2 94,404 - HMPREF1078_RS13315 0.44 +1.5 94,404 - HMPREF1078_RS13315 0.44 -1.7 94,476 + HMPREF1078_RS13315 0.56 -0.7 94,550 - HMPREF1078_RS13315 0.70 +0.5 94,550 - HMPREF1078_RS13315 0.70 -0.5 94,742 - -0.7 94,761 + -0.7 94,761 + -1.5 94,762 - -0.8 94,775 + -1.2 94,775 + +0.5 94,776 - -0.7 94,776 - +0.2 94,779 + +0.6 94,779 + -1.0 94,779 + +0.2 94,781 + -0.1 94,781 + -1.7 94,781 + -0.3 94,781 + -0.3 94,782 - -0.5 94,800 + -3.1 94,800 + +0.3 94,800 + -1.4 94,802 + -2.5 94,869 + +0.8 94,869 + -1.7 94,870 - +0.0 94,875 + +0.2 94,876 + +0.2 94,876 + -1.0 94,877 - -1.0 94,877 - -0.6 94,878 + -1.2 94,878 + -0.3 94,879 - -1.7 94,879 - +0.2 94,879 - -0.6 94,879 - -1.1 94,972 + HMPREF1078_RS13320 0.13 +0.2 94,972 + HMPREF1078_RS13320 0.13 +1.0 94,973 - HMPREF1078_RS13320 0.13 -0.9 94,973 - HMPREF1078_RS13320 0.13 -1.1 94,973 - HMPREF1078_RS13320 0.13 -1.3 94,973 - HMPREF1078_RS13320 0.13 -1.7 95,089 + HMPREF1078_RS13320 0.22 +0.4 95,089 + HMPREF1078_RS13320 0.22 -0.6 95,106 - HMPREF1078_RS13320 0.23 -1.7 95,114 + HMPREF1078_RS13320 0.24 -0.5
Or see this region's nucleotide sequence