Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13265 and HMPREF1078_RS13270 are separated by 1 nucleotides HMPREF1078_RS13270 and HMPREF1078_RS13275 are separated by 21 nucleotides HMPREF1078_RS13275 and HMPREF1078_RS13280 are separated by 112 nucleotides
HMPREF1078_RS13265: HMPREF1078_RS13265 - HAMP domain-containing sensor histidine kinase, at 84,870 to 85,991
_RS13265
HMPREF1078_RS13270: HMPREF1078_RS13270 - ATP-binding protein, at 85,993 to 86,403
_RS13270
HMPREF1078_RS13275: HMPREF1078_RS13275 - STAS domain-containing protein, at 86,425 to 86,724
_RS13275
HMPREF1078_RS13280: HMPREF1078_RS13280 - Gfo/Idh/MocA family oxidoreductase, at 86,837 to 88,150
_RS13280
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.048 kb on - strand, within HMPREF1078_RS13265 at 85.134 kb on + strand, within HMPREF1078_RS13265 at 85.134 kb on + strand, within HMPREF1078_RS13265 at 85.135 kb on - strand, within HMPREF1078_RS13265 at 85.142 kb on - strand, within HMPREF1078_RS13265 at 85.278 kb on + strand, within HMPREF1078_RS13265 at 85.284 kb on + strand, within HMPREF1078_RS13265 at 85.284 kb on + strand, within HMPREF1078_RS13265 at 85.473 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.592 kb on - strand, within HMPREF1078_RS13265 at 85.829 kb on - strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.832 kb on + strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.833 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.835 kb on - strand, within HMPREF1078_RS13265 at 85.842 kb on + strand, within HMPREF1078_RS13265 at 85.889 kb on - strand at 85.923 kb on + strand at 85.924 kb on - strand at 85.935 kb on + strand at 85.936 kb on - strand at 85.968 kb on - strand at 85.968 kb on - strand at 85.968 kb on - strand at 85.991 kb on + strand at 85.992 kb on - strand at 86.020 kb on + strand at 86.045 kb on + strand, within HMPREF1078_RS13270 at 86.045 kb on + strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.046 kb on - strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.121 kb on + strand, within HMPREF1078_RS13270 at 86.122 kb on - strand, within HMPREF1078_RS13270 at 86.122 kb on - strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.321 kb on + strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.322 kb on - strand, within HMPREF1078_RS13270 at 86.353 kb on + strand, within HMPREF1078_RS13270 at 86.362 kb on + strand, within HMPREF1078_RS13270 at 86.363 kb on - strand at 86.383 kb on + strand at 86.384 kb on - strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.385 kb on + strand at 86.386 kb on - strand at 86.386 kb on - strand at 86.390 kb on - strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.394 kb on + strand at 86.395 kb on - strand at 86.419 kb on + strand at 86.420 kb on - strand at 86.490 kb on + strand, within HMPREF1078_RS13275 at 86.541 kb on + strand, within HMPREF1078_RS13275 at 86.573 kb on + strand, within HMPREF1078_RS13275 at 86.574 kb on - strand, within HMPREF1078_RS13275 at 86.574 kb on - strand, within HMPREF1078_RS13275 at 86.664 kb on + strand, within HMPREF1078_RS13275 at 86.665 kb on - strand, within HMPREF1078_RS13275 at 86.711 kb on - strand at 86.724 kb on + strand at 86.725 kb on - strand at 86.735 kb on + strand at 86.764 kb on + strand at 86.768 kb on + strand at 86.795 kb on - strand at 86.869 kb on - strand at 86.880 kb on - strand at 86.883 kb on + strand at 86.884 kb on - strand at 86.947 kb on - strand at 86.961 kb on - strand at 87.008 kb on - strand, within HMPREF1078_RS13280 at 87.031 kb on + strand, within HMPREF1078_RS13280 at 87.031 kb on + strand, within HMPREF1078_RS13280 at 87.032 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.344 kb on - strand, within HMPREF1078_RS13280 at 87.372 kb on + strand, within HMPREF1078_RS13280 at 87.375 kb on - strand, within HMPREF1078_RS13280
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 85,048 - HMPREF1078_RS13265 0.16 -0.7 85,134 + HMPREF1078_RS13265 0.24 -0.9 85,134 + HMPREF1078_RS13265 0.24 +0.3 85,135 - HMPREF1078_RS13265 0.24 -0.5 85,142 - HMPREF1078_RS13265 0.24 +0.3 85,278 + HMPREF1078_RS13265 0.36 -0.2 85,284 + HMPREF1078_RS13265 0.37 +0.5 85,284 + HMPREF1078_RS13265 0.37 -0.0 85,473 - HMPREF1078_RS13265 0.54 +0.6 85,592 - HMPREF1078_RS13265 0.64 -0.7 85,592 - HMPREF1078_RS13265 0.64 -1.4 85,592 - HMPREF1078_RS13265 0.64 -1.2 85,829 - HMPREF1078_RS13265 0.85 -0.7 85,832 + HMPREF1078_RS13265 0.86 +0.2 85,832 + HMPREF1078_RS13265 0.86 -0.5 85,832 + HMPREF1078_RS13265 0.86 +0.4 85,833 - HMPREF1078_RS13265 0.86 +1.2 85,833 - HMPREF1078_RS13265 0.86 +0.1 85,833 - HMPREF1078_RS13265 0.86 -1.0 85,835 - HMPREF1078_RS13265 0.86 -0.3 85,835 - HMPREF1078_RS13265 0.86 -0.4 85,835 - HMPREF1078_RS13265 0.86 -0.7 85,842 + HMPREF1078_RS13265 0.87 +1.5 85,889 - +0.8 85,923 + -1.3 85,924 - +0.0 85,935 + -2.3 85,936 - -0.4 85,968 - +0.1 85,968 - +0.2 85,968 - -0.2 85,991 + +0.3 85,992 - -0.1 86,020 + -0.8 86,045 + HMPREF1078_RS13270 0.13 -1.7 86,045 + HMPREF1078_RS13270 0.13 -1.3 86,046 - HMPREF1078_RS13270 0.13 +0.0 86,046 - HMPREF1078_RS13270 0.13 +0.0 86,046 - HMPREF1078_RS13270 0.13 -0.1 86,121 + HMPREF1078_RS13270 0.31 -1.7 86,121 + HMPREF1078_RS13270 0.31 -3.4 86,121 + HMPREF1078_RS13270 0.31 -0.6 86,122 - HMPREF1078_RS13270 0.31 -2.3 86,122 - HMPREF1078_RS13270 0.31 +0.2 86,321 + HMPREF1078_RS13270 0.80 -1.0 86,321 + HMPREF1078_RS13270 0.80 -0.7 86,321 + HMPREF1078_RS13270 0.80 +0.0 86,321 + HMPREF1078_RS13270 0.80 -2.2 86,322 - HMPREF1078_RS13270 0.80 +0.2 86,322 - HMPREF1078_RS13270 0.80 -2.3 86,322 - HMPREF1078_RS13270 0.80 -0.3 86,353 + HMPREF1078_RS13270 0.88 -1.8 86,362 + HMPREF1078_RS13270 0.90 -1.0 86,363 - -0.7 86,383 + -3.5 86,384 - +1.9 86,385 + -0.8 86,385 + -1.7 86,385 + -1.6 86,385 + -1.7 86,386 - -1.3 86,386 - -1.7 86,390 - -0.3 86,394 + +1.5 86,394 + +0.5 86,394 + -2.5 86,394 + -0.8 86,394 + -1.5 86,395 - +1.3 86,419 + -2.3 86,420 - +0.4 86,490 + HMPREF1078_RS13275 0.22 +0.6 86,541 + HMPREF1078_RS13275 0.39 +0.9 86,573 + HMPREF1078_RS13275 0.49 +0.4 86,574 - HMPREF1078_RS13275 0.50 -0.8 86,574 - HMPREF1078_RS13275 0.50 -1.3 86,664 + HMPREF1078_RS13275 0.80 -0.6 86,665 - HMPREF1078_RS13275 0.80 -1.0 86,711 - +0.6 86,724 + +0.3 86,725 - -1.2 86,735 + -1.3 86,764 + -0.3 86,768 + -0.3 86,795 - -0.3 86,869 - +0.8 86,880 - +0.3 86,883 + +0.0 86,884 - -0.8 86,947 - +0.3 86,961 - -1.7 87,008 - HMPREF1078_RS13280 0.13 +0.5 87,031 + HMPREF1078_RS13280 0.15 -0.1 87,031 + HMPREF1078_RS13280 0.15 +0.5 87,032 - HMPREF1078_RS13280 0.15 -0.1 87,344 - HMPREF1078_RS13280 0.39 +0.0 87,344 - HMPREF1078_RS13280 0.39 +0.8 87,344 - HMPREF1078_RS13280 0.39 +0.3 87,372 + HMPREF1078_RS13280 0.41 -3.0 87,375 - HMPREF1078_RS13280 0.41 +0.5
Or see this region's nucleotide sequence