Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13180 and HMPREF1078_RS13185 are separated by 121 nucleotides HMPREF1078_RS13185 and HMPREF1078_RS13190 are separated by 19 nucleotides
HMPREF1078_RS13180: HMPREF1078_RS13180 - nucleoside triphosphate pyrophosphohydrolase, at 61,118 to 61,903
_RS13180
HMPREF1078_RS13185: HMPREF1078_RS13185 - cytochrome c biogenesis protein CcdA, at 62,025 to 64,118
_RS13185
HMPREF1078_RS13190: HMPREF1078_RS13190 - RluA family pseudouridine synthase, at 64,138 to 65,049
_RS13190
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.026 kb on + strand at 61.026 kb on + strand at 61.030 kb on - strand at 61.030 kb on - strand at 61.030 kb on - strand at 61.035 kb on + strand at 61.035 kb on + strand at 61.036 kb on - strand at 61.036 kb on - strand at 61.036 kb on - strand at 61.036 kb on - strand at 61.058 kb on + strand at 61.059 kb on - strand at 61.059 kb on - strand at 61.072 kb on - strand at 61.076 kb on + strand at 61.077 kb on - strand at 61.120 kb on - strand at 61.121 kb on + strand at 61.121 kb on + strand at 61.122 kb on - strand at 61.174 kb on + strand at 61.174 kb on + strand at 61.175 kb on - strand at 61.175 kb on - strand at 61.201 kb on + strand, within HMPREF1078_RS13180 at 61.202 kb on - strand, within HMPREF1078_RS13180 at 61.204 kb on + strand, within HMPREF1078_RS13180 at 61.204 kb on + strand, within HMPREF1078_RS13180 at 61.205 kb on - strand, within HMPREF1078_RS13180 at 61.205 kb on - strand, within HMPREF1078_RS13180 at 61.205 kb on - strand, within HMPREF1078_RS13180 at 61.205 kb on - strand, within HMPREF1078_RS13180 at 61.218 kb on + strand, within HMPREF1078_RS13180 at 61.280 kb on - strand, within HMPREF1078_RS13180 at 61.281 kb on + strand, within HMPREF1078_RS13180 at 61.281 kb on + strand, within HMPREF1078_RS13180 at 61.281 kb on + strand, within HMPREF1078_RS13180 at 61.281 kb on + strand, within HMPREF1078_RS13180 at 61.282 kb on - strand, within HMPREF1078_RS13180 at 61.339 kb on + strand, within HMPREF1078_RS13180 at 61.339 kb on + strand, within HMPREF1078_RS13180 at 61.340 kb on - strand, within HMPREF1078_RS13180 at 61.340 kb on - strand, within HMPREF1078_RS13180 at 61.612 kb on - strand, within HMPREF1078_RS13180 at 61.612 kb on - strand, within HMPREF1078_RS13180 at 61.687 kb on - strand, within HMPREF1078_RS13180 at 61.687 kb on - strand, within HMPREF1078_RS13180 at 61.687 kb on - strand, within HMPREF1078_RS13180 at 61.733 kb on - strand, within HMPREF1078_RS13180 at 61.771 kb on - strand, within HMPREF1078_RS13180 at 61.771 kb on - strand, within HMPREF1078_RS13180 at 61.787 kb on - strand, within HMPREF1078_RS13180 at 61.816 kb on + strand, within HMPREF1078_RS13180 at 62.018 kb on + strand at 62.018 kb on + strand at 62.018 kb on + strand at 62.018 kb on + strand at 62.026 kb on + strand at 62.027 kb on - strand at 62.031 kb on - strand at 62.048 kb on + strand at 62.048 kb on + strand at 62.048 kb on + strand at 62.049 kb on - strand at 62.053 kb on - strand at 62.082 kb on - strand at 62.082 kb on - strand at 62.083 kb on + strand at 62.110 kb on + strand at 62.181 kb on - strand at 62.181 kb on - strand at 62.183 kb on + strand at 62.184 kb on - strand at 62.195 kb on - strand at 62.276 kb on + strand, within HMPREF1078_RS13185 at 62.277 kb on - strand, within HMPREF1078_RS13185 at 62.305 kb on + strand, within HMPREF1078_RS13185 at 62.305 kb on + strand, within HMPREF1078_RS13185 at 62.306 kb on - strand, within HMPREF1078_RS13185 at 62.306 kb on - strand, within HMPREF1078_RS13185 at 62.306 kb on - strand, within HMPREF1078_RS13185 at 62.320 kb on - strand, within HMPREF1078_RS13185 at 62.500 kb on + strand, within HMPREF1078_RS13185 at 62.501 kb on - strand, within HMPREF1078_RS13185 at 62.561 kb on + strand, within HMPREF1078_RS13185 at 62.562 kb on - strand, within HMPREF1078_RS13185 at 62.563 kb on + strand, within HMPREF1078_RS13185 at 62.564 kb on - strand, within HMPREF1078_RS13185 at 62.614 kb on - strand, within HMPREF1078_RS13185 at 62.614 kb on - strand, within HMPREF1078_RS13185 at 62.617 kb on + strand, within HMPREF1078_RS13185 at 62.618 kb on - strand, within HMPREF1078_RS13185 at 62.618 kb on - strand, within HMPREF1078_RS13185 at 62.618 kb on - strand, within HMPREF1078_RS13185 at 62.652 kb on - strand, within HMPREF1078_RS13185 at 62.662 kb on + strand, within HMPREF1078_RS13185 at 62.678 kb on + strand, within HMPREF1078_RS13185 at 62.703 kb on - strand, within HMPREF1078_RS13185 at 62.790 kb on + strand, within HMPREF1078_RS13185 at 62.790 kb on + strand, within HMPREF1078_RS13185 at 62.791 kb on - strand, within HMPREF1078_RS13185 at 62.880 kb on - strand, within HMPREF1078_RS13185 at 62.923 kb on - strand, within HMPREF1078_RS13185 at 63.029 kb on + strand, within HMPREF1078_RS13185 at 63.065 kb on + strand, within HMPREF1078_RS13185 at 63.084 kb on + strand, within HMPREF1078_RS13185 at 63.084 kb on + strand, within HMPREF1078_RS13185 at 63.085 kb on - strand, within HMPREF1078_RS13185 at 63.126 kb on + strand, within HMPREF1078_RS13185 at 63.127 kb on - strand, within HMPREF1078_RS13185 at 63.127 kb on - strand, within HMPREF1078_RS13185 at 63.129 kb on + strand, within HMPREF1078_RS13185 at 63.144 kb on + strand, within HMPREF1078_RS13185 at 63.145 kb on - strand, within HMPREF1078_RS13185 at 63.145 kb on - strand, within HMPREF1078_RS13185 at 63.149 kb on + strand, within HMPREF1078_RS13185 at 63.199 kb on - strand, within HMPREF1078_RS13185 at 63.201 kb on - strand, within HMPREF1078_RS13185 at 63.230 kb on - strand, within HMPREF1078_RS13185 at 63.230 kb on - strand, within HMPREF1078_RS13185 at 63.270 kb on + strand, within HMPREF1078_RS13185 at 63.337 kb on - strand, within HMPREF1078_RS13185 at 63.533 kb on + strand, within HMPREF1078_RS13185 at 63.663 kb on + strand, within HMPREF1078_RS13185 at 63.812 kb on - strand, within HMPREF1078_RS13185 at 63.845 kb on - strand, within HMPREF1078_RS13185 at 63.846 kb on + strand, within HMPREF1078_RS13185 at 63.847 kb on - strand, within HMPREF1078_RS13185 at 63.958 kb on + strand at 63.958 kb on + strand at 63.959 kb on - strand at 64.032 kb on + strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.104 kb on - strand at 64.139 kb on + strand at 64.140 kb on - strand at 64.155 kb on + strand at 64.156 kb on - strand at 64.271 kb on + strand, within HMPREF1078_RS13190 at 64.272 kb on - strand, within HMPREF1078_RS13190 at 64.272 kb on - strand, within HMPREF1078_RS13190 at 64.368 kb on - strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.436 kb on + strand, within HMPREF1078_RS13190 at 64.437 kb on - strand, within HMPREF1078_RS13190 at 64.437 kb on - strand, within HMPREF1078_RS13190 at 64.437 kb on - strand, within HMPREF1078_RS13190 at 64.437 kb on - strand, within HMPREF1078_RS13190 at 64.477 kb on + strand, within HMPREF1078_RS13190 at 64.478 kb on - strand, within HMPREF1078_RS13190 at 64.520 kb on + strand, within HMPREF1078_RS13190 at 64.520 kb on + strand, within HMPREF1078_RS13190 at 64.520 kb on + strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.521 kb on - strand, within HMPREF1078_RS13190 at 64.637 kb on - strand, within HMPREF1078_RS13190 at 64.637 kb on - strand, within HMPREF1078_RS13190 at 64.637 kb on - strand, within HMPREF1078_RS13190 at 64.644 kb on + strand, within HMPREF1078_RS13190 at 64.667 kb on + strand, within HMPREF1078_RS13190 at 64.668 kb on - strand, within HMPREF1078_RS13190 at 64.825 kb on + strand, within HMPREF1078_RS13190 at 64.927 kb on - strand, within HMPREF1078_RS13190 at 64.963 kb on + strand at 64.968 kb on + strand at 64.969 kb on - strand at 64.992 kb on + strand at 65.017 kb on - strand at 65.031 kb on - strand at 65.056 kb on - strand at 65.060 kb on - strand at 65.060 kb on - strand at 65.060 kb on - strand at 65.061 kb on + strand at 65.061 kb on + strand at 65.061 kb on + strand at 65.062 kb on - strand at 65.062 kb on - strand at 65.064 kb on - strand at 65.065 kb on + strand at 65.071 kb on - strand at 65.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 61,026 + -0.1 61,026 + -1.9 61,030 - +0.6 61,030 - +0.3 61,030 - -0.7 61,035 + -0.0 61,035 + -1.1 61,036 - +0.2 61,036 - -1.9 61,036 - -0.5 61,036 - +0.8 61,058 + -0.5 61,059 - -0.6 61,059 - +1.5 61,072 - +0.6 61,076 + +0.6 61,077 - -0.2 61,120 - +0.3 61,121 + -0.8 61,121 + -0.4 61,122 - -1.7 61,174 + +0.9 61,174 + -0.5 61,175 - +0.1 61,175 - -3.0 61,201 + HMPREF1078_RS13180 0.11 -1.0 61,202 - HMPREF1078_RS13180 0.11 +1.3 61,204 + HMPREF1078_RS13180 0.11 +0.2 61,204 + HMPREF1078_RS13180 0.11 -0.4 61,205 - HMPREF1078_RS13180 0.11 -1.0 61,205 - HMPREF1078_RS13180 0.11 -0.1 61,205 - HMPREF1078_RS13180 0.11 +0.3 61,205 - HMPREF1078_RS13180 0.11 -0.3 61,218 + HMPREF1078_RS13180 0.13 +0.2 61,280 - HMPREF1078_RS13180 0.21 -0.3 61,281 + HMPREF1078_RS13180 0.21 -1.2 61,281 + HMPREF1078_RS13180 0.21 +1.0 61,281 + HMPREF1078_RS13180 0.21 +0.7 61,281 + HMPREF1078_RS13180 0.21 -1.1 61,282 - HMPREF1078_RS13180 0.21 +0.6 61,339 + HMPREF1078_RS13180 0.28 +0.6 61,339 + HMPREF1078_RS13180 0.28 +0.0 61,340 - HMPREF1078_RS13180 0.28 +0.5 61,340 - HMPREF1078_RS13180 0.28 +0.8 61,612 - HMPREF1078_RS13180 0.63 +0.9 61,612 - HMPREF1078_RS13180 0.63 +0.2 61,687 - HMPREF1078_RS13180 0.72 +1.2 61,687 - HMPREF1078_RS13180 0.72 +1.1 61,687 - HMPREF1078_RS13180 0.72 -0.4 61,733 - HMPREF1078_RS13180 0.78 +0.1 61,771 - HMPREF1078_RS13180 0.83 +0.4 61,771 - HMPREF1078_RS13180 0.83 -1.5 61,787 - HMPREF1078_RS13180 0.85 -0.2 61,816 + HMPREF1078_RS13180 0.89 -0.5 62,018 + +0.4 62,018 + -1.8 62,018 + -0.3 62,018 + -0.8 62,026 + -2.5 62,027 - +0.3 62,031 - -1.2 62,048 + -0.6 62,048 + -2.0 62,048 + -1.9 62,049 - -1.6 62,053 - +0.6 62,082 - -0.4 62,082 - -2.2 62,083 + -1.2 62,110 + -1.7 62,181 - -0.3 62,181 - -0.8 62,183 + -0.3 62,184 - -2.0 62,195 - +0.9 62,276 + HMPREF1078_RS13185 0.12 +1.5 62,277 - HMPREF1078_RS13185 0.12 -1.5 62,305 + HMPREF1078_RS13185 0.13 -0.1 62,305 + HMPREF1078_RS13185 0.13 +0.9 62,306 - HMPREF1078_RS13185 0.13 -0.9 62,306 - HMPREF1078_RS13185 0.13 -2.1 62,306 - HMPREF1078_RS13185 0.13 -2.4 62,320 - HMPREF1078_RS13185 0.14 +0.9 62,500 + HMPREF1078_RS13185 0.23 -2.5 62,501 - HMPREF1078_RS13185 0.23 -0.1 62,561 + HMPREF1078_RS13185 0.26 -0.3 62,562 - HMPREF1078_RS13185 0.26 +1.5 62,563 + HMPREF1078_RS13185 0.26 -0.2 62,564 - HMPREF1078_RS13185 0.26 -0.3 62,614 - HMPREF1078_RS13185 0.28 -0.3 62,614 - HMPREF1078_RS13185 0.28 +0.1 62,617 + HMPREF1078_RS13185 0.28 -0.5 62,618 - HMPREF1078_RS13185 0.28 +0.3 62,618 - HMPREF1078_RS13185 0.28 -0.8 62,618 - HMPREF1078_RS13185 0.28 +0.5 62,652 - HMPREF1078_RS13185 0.30 -1.6 62,662 + HMPREF1078_RS13185 0.30 +1.5 62,678 + HMPREF1078_RS13185 0.31 +0.0 62,703 - HMPREF1078_RS13185 0.32 -0.2 62,790 + HMPREF1078_RS13185 0.37 -0.8 62,790 + HMPREF1078_RS13185 0.37 -1.2 62,791 - HMPREF1078_RS13185 0.37 +0.4 62,880 - HMPREF1078_RS13185 0.41 +0.5 62,923 - HMPREF1078_RS13185 0.43 +2.5 63,029 + HMPREF1078_RS13185 0.48 +2.5 63,065 + HMPREF1078_RS13185 0.50 -0.5 63,084 + HMPREF1078_RS13185 0.51 +1.5 63,084 + HMPREF1078_RS13185 0.51 -0.3 63,085 - HMPREF1078_RS13185 0.51 -0.5 63,126 + HMPREF1078_RS13185 0.53 -1.0 63,127 - HMPREF1078_RS13185 0.53 +0.2 63,127 - HMPREF1078_RS13185 0.53 +0.2 63,129 + HMPREF1078_RS13185 0.53 -0.2 63,144 + HMPREF1078_RS13185 0.53 +2.9 63,145 - HMPREF1078_RS13185 0.53 +0.4 63,145 - HMPREF1078_RS13185 0.53 +0.5 63,149 + HMPREF1078_RS13185 0.54 -1.7 63,199 - HMPREF1078_RS13185 0.56 -1.2 63,201 - HMPREF1078_RS13185 0.56 -1.4 63,230 - HMPREF1078_RS13185 0.58 +1.3 63,230 - HMPREF1078_RS13185 0.58 +1.2 63,270 + HMPREF1078_RS13185 0.59 +0.9 63,337 - HMPREF1078_RS13185 0.63 -0.3 63,533 + HMPREF1078_RS13185 0.72 -0.4 63,663 + HMPREF1078_RS13185 0.78 -1.5 63,812 - HMPREF1078_RS13185 0.85 +0.0 63,845 - HMPREF1078_RS13185 0.87 +0.1 63,846 + HMPREF1078_RS13185 0.87 +0.2 63,847 - HMPREF1078_RS13185 0.87 +0.4 63,958 + -1.7 63,958 + -1.4 63,959 - -0.3 64,032 + +1.2 64,033 - -1.7 64,033 - -0.5 64,033 - -0.7 64,104 - -1.0 64,139 + -1.7 64,140 - -1.0 64,155 + +1.1 64,156 - -0.3 64,271 + HMPREF1078_RS13190 0.15 +0.0 64,272 - HMPREF1078_RS13190 0.15 -1.6 64,272 - HMPREF1078_RS13190 0.15 -0.2 64,368 - HMPREF1078_RS13190 0.25 +0.5 64,436 + HMPREF1078_RS13190 0.33 -1.5 64,436 + HMPREF1078_RS13190 0.33 -1.7 64,436 + HMPREF1078_RS13190 0.33 +2.0 64,436 + HMPREF1078_RS13190 0.33 -1.3 64,436 + HMPREF1078_RS13190 0.33 -3.5 64,436 + HMPREF1078_RS13190 0.33 -2.2 64,437 - HMPREF1078_RS13190 0.33 +0.1 64,437 - HMPREF1078_RS13190 0.33 +0.6 64,437 - HMPREF1078_RS13190 0.33 +0.0 64,437 - HMPREF1078_RS13190 0.33 -0.1 64,477 + HMPREF1078_RS13190 0.37 -1.5 64,478 - HMPREF1078_RS13190 0.37 +0.8 64,520 + HMPREF1078_RS13190 0.42 -0.8 64,520 + HMPREF1078_RS13190 0.42 -1.1 64,520 + HMPREF1078_RS13190 0.42 +1.5 64,521 - HMPREF1078_RS13190 0.42 +0.3 64,521 - HMPREF1078_RS13190 0.42 -0.4 64,521 - HMPREF1078_RS13190 0.42 -0.8 64,521 - HMPREF1078_RS13190 0.42 +0.8 64,521 - HMPREF1078_RS13190 0.42 -0.2 64,521 - HMPREF1078_RS13190 0.42 -0.6 64,637 - HMPREF1078_RS13190 0.55 +0.2 64,637 - HMPREF1078_RS13190 0.55 -1.5 64,637 - HMPREF1078_RS13190 0.55 -0.2 64,644 + HMPREF1078_RS13190 0.55 -0.9 64,667 + HMPREF1078_RS13190 0.58 -1.7 64,668 - HMPREF1078_RS13190 0.58 -0.4 64,825 + HMPREF1078_RS13190 0.75 -0.2 64,927 - HMPREF1078_RS13190 0.87 -0.1 64,963 + -0.3 64,968 + -0.9 64,969 - +0.4 64,992 + -1.0 65,017 - -0.9 65,031 - -0.6 65,056 - -1.7 65,060 - +0.9 65,060 - -0.3 65,060 - +0.8 65,061 + -1.8 65,061 + -1.4 65,061 + -1.9 65,062 - -0.8 65,062 - +0.5 65,064 - -1.1 65,065 + -1.0 65,071 - -0.7 65,078 + -0.0
Or see this region's nucleotide sequence