Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13175

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13165 and HMPREF1078_RS13170 are separated by 46 nucleotidesHMPREF1078_RS13170 and HMPREF1078_RS13175 are separated by 48 nucleotidesHMPREF1078_RS13175 and HMPREF1078_RS13180 are separated by 94 nucleotides HMPREF1078_RS13165: HMPREF1078_RS13165 - RNA polymerase sigma factor, at 59,517 to 60,068 _RS13165 HMPREF1078_RS13170: HMPREF1078_RS13170 - hypothetical protein, at 60,115 to 60,504 _RS13170 HMPREF1078_RS13175: HMPREF1078_RS13175 - hypothetical protein, at 60,553 to 61,023 _RS13175 HMPREF1078_RS13180: HMPREF1078_RS13180 - nucleoside triphosphate pyrophosphohydrolase, at 61,118 to 61,903 _RS13180 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.554 kb on + strandat 59.555 kb on - strandat 59.555 kb on - strandat 59.620 kb on - strand, within HMPREF1078_RS13165at 59.620 kb on - strand, within HMPREF1078_RS13165at 59.629 kb on + strand, within HMPREF1078_RS13165at 59.629 kb on + strand, within HMPREF1078_RS13165at 59.668 kb on + strand, within HMPREF1078_RS13165at 59.668 kb on + strand, within HMPREF1078_RS13165at 59.669 kb on - strand, within HMPREF1078_RS13165at 59.678 kb on + strand, within HMPREF1078_RS13165at 59.678 kb on + strand, within HMPREF1078_RS13165at 59.678 kb on + strand, within HMPREF1078_RS13165at 59.679 kb on - strand, within HMPREF1078_RS13165at 59.679 kb on - strand, within HMPREF1078_RS13165at 59.679 kb on - strand, within HMPREF1078_RS13165at 59.745 kb on + strand, within HMPREF1078_RS13165at 59.745 kb on + strand, within HMPREF1078_RS13165at 59.746 kb on - strand, within HMPREF1078_RS13165at 59.746 kb on - strand, within HMPREF1078_RS13165at 59.746 kb on - strand, within HMPREF1078_RS13165at 59.747 kb on + strand, within HMPREF1078_RS13165at 59.747 kb on + strand, within HMPREF1078_RS13165at 59.768 kb on + strand, within HMPREF1078_RS13165at 59.768 kb on + strand, within HMPREF1078_RS13165at 59.768 kb on + strand, within HMPREF1078_RS13165at 59.769 kb on - strand, within HMPREF1078_RS13165at 59.860 kb on - strand, within HMPREF1078_RS13165at 59.860 kb on - strand, within HMPREF1078_RS13165at 59.939 kb on + strand, within HMPREF1078_RS13165at 59.939 kb on + strand, within HMPREF1078_RS13165at 59.940 kb on - strand, within HMPREF1078_RS13165at 59.946 kb on + strand, within HMPREF1078_RS13165at 59.964 kb on + strand, within HMPREF1078_RS13165at 59.972 kb on + strand, within HMPREF1078_RS13165at 59.972 kb on + strand, within HMPREF1078_RS13165at 59.972 kb on + strand, within HMPREF1078_RS13165at 59.972 kb on + strand, within HMPREF1078_RS13165at 59.973 kb on - strand, within HMPREF1078_RS13165at 59.973 kb on - strand, within HMPREF1078_RS13165at 59.973 kb on - strand, within HMPREF1078_RS13165at 59.973 kb on - strand, within HMPREF1078_RS13165at 59.973 kb on - strand, within HMPREF1078_RS13165at 60.008 kb on - strand, within HMPREF1078_RS13165at 60.018 kb on + strandat 60.019 kb on - strandat 60.114 kb on + strandat 60.115 kb on - strandat 60.181 kb on + strand, within HMPREF1078_RS13170at 60.207 kb on + strand, within HMPREF1078_RS13170at 60.207 kb on + strand, within HMPREF1078_RS13170at 60.208 kb on - strand, within HMPREF1078_RS13170at 60.284 kb on + strand, within HMPREF1078_RS13170at 60.284 kb on + strand, within HMPREF1078_RS13170at 60.284 kb on + strand, within HMPREF1078_RS13170at 60.285 kb on - strand, within HMPREF1078_RS13170at 60.285 kb on - strand, within HMPREF1078_RS13170at 60.285 kb on - strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.286 kb on + strand, within HMPREF1078_RS13170at 60.287 kb on - strand, within HMPREF1078_RS13170at 60.287 kb on - strand, within HMPREF1078_RS13170at 60.287 kb on - strand, within HMPREF1078_RS13170at 60.287 kb on - strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.288 kb on + strand, within HMPREF1078_RS13170at 60.289 kb on - strand, within HMPREF1078_RS13170at 60.289 kb on - strand, within HMPREF1078_RS13170at 60.289 kb on - strand, within HMPREF1078_RS13170at 60.289 kb on - strand, within HMPREF1078_RS13170at 60.289 kb on - strand, within HMPREF1078_RS13170at 60.377 kb on + strand, within HMPREF1078_RS13170at 60.436 kb on + strand, within HMPREF1078_RS13170at 60.436 kb on + strand, within HMPREF1078_RS13170at 60.436 kb on + strand, within HMPREF1078_RS13170at 60.436 kb on + strand, within HMPREF1078_RS13170at 60.436 kb on + strand, within HMPREF1078_RS13170at 60.445 kb on + strand, within HMPREF1078_RS13170at 60.460 kb on + strand, within HMPREF1078_RS13170at 60.471 kb on + strandat 60.473 kb on + strandat 60.558 kb on + strandat 60.573 kb on + strandat 60.681 kb on + strand, within HMPREF1078_RS13175at 60.684 kb on + strand, within HMPREF1078_RS13175at 60.832 kb on + strand, within HMPREF1078_RS13175at 60.898 kb on + strand, within HMPREF1078_RS13175at 60.939 kb on + strand, within HMPREF1078_RS13175at 60.943 kb on + strand, within HMPREF1078_RS13175at 60.943 kb on + strand, within HMPREF1078_RS13175at 60.943 kb on + strand, within HMPREF1078_RS13175at 60.945 kb on + strand, within HMPREF1078_RS13175at 60.945 kb on + strand, within HMPREF1078_RS13175at 60.945 kb on + strand, within HMPREF1078_RS13175at 60.978 kb on + strandat 60.978 kb on + strandat 60.978 kb on + strandat 60.979 kb on - strandat 60.996 kb on + strandat 60.996 kb on + strandat 61.011 kb on + strandat 61.011 kb on + strandat 61.012 kb on - strandat 61.012 kb on - strandat 61.026 kb on + strandat 61.026 kb on + strandat 61.030 kb on - strandat 61.030 kb on - strandat 61.030 kb on - strandat 61.035 kb on + strandat 61.035 kb on + strandat 61.036 kb on - strandat 61.036 kb on - strandat 61.036 kb on - strandat 61.036 kb on - strandat 61.058 kb on + strandat 61.059 kb on - strandat 61.059 kb on - strandat 61.072 kb on - strandat 61.076 kb on + strandat 61.077 kb on - strandat 61.120 kb on - strandat 61.121 kb on + strandat 61.121 kb on + strandat 61.122 kb on - strandat 61.174 kb on + strandat 61.174 kb on + strandat 61.175 kb on - strandat 61.175 kb on - strandat 61.201 kb on + strand, within HMPREF1078_RS13180at 61.202 kb on - strand, within HMPREF1078_RS13180at 61.204 kb on + strand, within HMPREF1078_RS13180at 61.204 kb on + strand, within HMPREF1078_RS13180at 61.205 kb on - strand, within HMPREF1078_RS13180at 61.205 kb on - strand, within HMPREF1078_RS13180at 61.205 kb on - strand, within HMPREF1078_RS13180at 61.205 kb on - strand, within HMPREF1078_RS13180at 61.218 kb on + strand, within HMPREF1078_RS13180at 61.280 kb on - strand, within HMPREF1078_RS13180at 61.281 kb on + strand, within HMPREF1078_RS13180at 61.281 kb on + strand, within HMPREF1078_RS13180at 61.281 kb on + strand, within HMPREF1078_RS13180at 61.281 kb on + strand, within HMPREF1078_RS13180at 61.282 kb on - strand, within HMPREF1078_RS13180at 61.339 kb on + strand, within HMPREF1078_RS13180at 61.339 kb on + strand, within HMPREF1078_RS13180at 61.340 kb on - strand, within HMPREF1078_RS13180at 61.340 kb on - strand, within HMPREF1078_RS13180at 61.612 kb on - strand, within HMPREF1078_RS13180at 61.612 kb on - strand, within HMPREF1078_RS13180at 61.687 kb on - strand, within HMPREF1078_RS13180at 61.687 kb on - strand, within HMPREF1078_RS13180at 61.687 kb on - strand, within HMPREF1078_RS13180at 61.733 kb on - strand, within HMPREF1078_RS13180at 61.771 kb on - strand, within HMPREF1078_RS13180at 61.771 kb on - strand, within HMPREF1078_RS13180at 61.787 kb on - strand, within HMPREF1078_RS13180at 61.816 kb on + strand, within HMPREF1078_RS13180at 62.018 kb on + strandat 62.018 kb on + strandat 62.018 kb on + strandat 62.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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59,554 + -0.9
59,555 - +0.3
59,555 - +0.1
59,620 - HMPREF1078_RS13165 0.19 -0.4
59,620 - HMPREF1078_RS13165 0.19 -2.8
59,629 + HMPREF1078_RS13165 0.20 +1.5
59,629 + HMPREF1078_RS13165 0.20 +0.2
59,668 + HMPREF1078_RS13165 0.27 -0.7
59,668 + HMPREF1078_RS13165 0.27 -2.2
59,669 - HMPREF1078_RS13165 0.28 -0.0
59,678 + HMPREF1078_RS13165 0.29 -0.5
59,678 + HMPREF1078_RS13165 0.29 -1.1
59,678 + HMPREF1078_RS13165 0.29 -0.8
59,679 - HMPREF1078_RS13165 0.29 +0.3
59,679 - HMPREF1078_RS13165 0.29 +0.5
59,679 - HMPREF1078_RS13165 0.29 -1.5
59,745 + HMPREF1078_RS13165 0.41 +0.5
59,745 + HMPREF1078_RS13165 0.41 -0.2
59,746 - HMPREF1078_RS13165 0.41 +2.1
59,746 - HMPREF1078_RS13165 0.41 -0.5
59,746 - HMPREF1078_RS13165 0.41 -0.4
59,747 + HMPREF1078_RS13165 0.42 -2.9
59,747 + HMPREF1078_RS13165 0.42 +1.5
59,768 + HMPREF1078_RS13165 0.45 -0.1
59,768 + HMPREF1078_RS13165 0.45 -0.4
59,768 + HMPREF1078_RS13165 0.45 -0.7
59,769 - HMPREF1078_RS13165 0.46 +0.4
59,860 - HMPREF1078_RS13165 0.62 -0.5
59,860 - HMPREF1078_RS13165 0.62 +1.0
59,939 + HMPREF1078_RS13165 0.76 +0.7
59,939 + HMPREF1078_RS13165 0.76 +0.6
59,940 - HMPREF1078_RS13165 0.77 -1.1
59,946 + HMPREF1078_RS13165 0.78 +0.9
59,964 + HMPREF1078_RS13165 0.81 -0.2
59,972 + HMPREF1078_RS13165 0.82 +0.2
59,972 + HMPREF1078_RS13165 0.82 -0.3
59,972 + HMPREF1078_RS13165 0.82 -0.1
59,972 + HMPREF1078_RS13165 0.82 -0.7
59,973 - HMPREF1078_RS13165 0.83 -0.7
59,973 - HMPREF1078_RS13165 0.83 -0.3
59,973 - HMPREF1078_RS13165 0.83 -1.1
59,973 - HMPREF1078_RS13165 0.83 +0.0
59,973 - HMPREF1078_RS13165 0.83 +0.7
60,008 - HMPREF1078_RS13165 0.89 +0.5
60,018 + -1.5
60,019 - -0.4
60,114 + -0.3
60,115 - -0.3
60,181 + HMPREF1078_RS13170 0.17 -0.5
60,207 + HMPREF1078_RS13170 0.24 -0.3
60,207 + HMPREF1078_RS13170 0.24 -2.1
60,208 - HMPREF1078_RS13170 0.24 -0.7
60,284 + HMPREF1078_RS13170 0.43 -0.7
60,284 + HMPREF1078_RS13170 0.43 +0.7
60,284 + HMPREF1078_RS13170 0.43 +0.8
60,285 - HMPREF1078_RS13170 0.44 +1.4
60,285 - HMPREF1078_RS13170 0.44 -0.2
60,285 - HMPREF1078_RS13170 0.44 +0.3
60,286 + HMPREF1078_RS13170 0.44 -1.6
60,286 + HMPREF1078_RS13170 0.44 +0.6
60,286 + HMPREF1078_RS13170 0.44 +0.5
60,286 + HMPREF1078_RS13170 0.44 -0.4
60,286 + HMPREF1078_RS13170 0.44 -0.5
60,286 + HMPREF1078_RS13170 0.44 -1.4
60,287 - HMPREF1078_RS13170 0.44 +0.3
60,287 - HMPREF1078_RS13170 0.44 +0.9
60,287 - HMPREF1078_RS13170 0.44 -0.6
60,287 - HMPREF1078_RS13170 0.44 -0.7
60,288 + HMPREF1078_RS13170 0.44 +1.0
60,288 + HMPREF1078_RS13170 0.44 -0.7
60,288 + HMPREF1078_RS13170 0.44 +0.4
60,288 + HMPREF1078_RS13170 0.44 +0.6
60,288 + HMPREF1078_RS13170 0.44 +0.2
60,288 + HMPREF1078_RS13170 0.44 +1.0
60,289 - HMPREF1078_RS13170 0.45 -0.5
60,289 - HMPREF1078_RS13170 0.45 -2.0
60,289 - HMPREF1078_RS13170 0.45 +0.2
60,289 - HMPREF1078_RS13170 0.45 -0.6
60,289 - HMPREF1078_RS13170 0.45 -0.4
60,377 + HMPREF1078_RS13170 0.67 +1.8
60,436 + HMPREF1078_RS13170 0.82 +0.4
60,436 + HMPREF1078_RS13170 0.82 -1.4
60,436 + HMPREF1078_RS13170 0.82 +1.5
60,436 + HMPREF1078_RS13170 0.82 +1.3
60,436 + HMPREF1078_RS13170 0.82 -0.3
60,445 + HMPREF1078_RS13170 0.85 -0.1
60,460 + HMPREF1078_RS13170 0.88 -0.1
60,471 + -0.3
60,473 + -0.2
60,558 + -0.1
60,573 + +2.1
60,681 + HMPREF1078_RS13175 0.27 +1.2
60,684 + HMPREF1078_RS13175 0.28 -1.0
60,832 + HMPREF1078_RS13175 0.59 +0.5
60,898 + HMPREF1078_RS13175 0.73 +1.2
60,939 + HMPREF1078_RS13175 0.82 +0.2
60,943 + HMPREF1078_RS13175 0.83 -0.9
60,943 + HMPREF1078_RS13175 0.83 -0.7
60,943 + HMPREF1078_RS13175 0.83 -1.9
60,945 + HMPREF1078_RS13175 0.83 +0.9
60,945 + HMPREF1078_RS13175 0.83 -0.1
60,945 + HMPREF1078_RS13175 0.83 -1.6
60,978 + -0.5
60,978 + -0.6
60,978 + -0.5
60,979 - -1.4
60,996 + -0.2
60,996 + -0.7
61,011 + -1.0
61,011 + -0.1
61,012 - +0.2
61,012 - -0.1
61,026 + -0.1
61,026 + -1.9
61,030 - +0.6
61,030 - +0.3
61,030 - -0.7
61,035 + -0.0
61,035 + -1.1
61,036 - +0.2
61,036 - -1.9
61,036 - -0.5
61,036 - +0.8
61,058 + -0.5
61,059 - -0.6
61,059 - +1.5
61,072 - +0.6
61,076 + +0.6
61,077 - -0.2
61,120 - +0.3
61,121 + -0.8
61,121 + -0.4
61,122 - -1.7
61,174 + +0.9
61,174 + -0.5
61,175 - +0.1
61,175 - -3.0
61,201 + HMPREF1078_RS13180 0.11 -1.0
61,202 - HMPREF1078_RS13180 0.11 +1.3
61,204 + HMPREF1078_RS13180 0.11 +0.2
61,204 + HMPREF1078_RS13180 0.11 -0.4
61,205 - HMPREF1078_RS13180 0.11 -1.0
61,205 - HMPREF1078_RS13180 0.11 -0.1
61,205 - HMPREF1078_RS13180 0.11 +0.3
61,205 - HMPREF1078_RS13180 0.11 -0.3
61,218 + HMPREF1078_RS13180 0.13 +0.2
61,280 - HMPREF1078_RS13180 0.21 -0.3
61,281 + HMPREF1078_RS13180 0.21 -1.2
61,281 + HMPREF1078_RS13180 0.21 +1.0
61,281 + HMPREF1078_RS13180 0.21 +0.7
61,281 + HMPREF1078_RS13180 0.21 -1.1
61,282 - HMPREF1078_RS13180 0.21 +0.6
61,339 + HMPREF1078_RS13180 0.28 +0.6
61,339 + HMPREF1078_RS13180 0.28 +0.0
61,340 - HMPREF1078_RS13180 0.28 +0.5
61,340 - HMPREF1078_RS13180 0.28 +0.8
61,612 - HMPREF1078_RS13180 0.63 +0.9
61,612 - HMPREF1078_RS13180 0.63 +0.2
61,687 - HMPREF1078_RS13180 0.72 +1.2
61,687 - HMPREF1078_RS13180 0.72 +1.1
61,687 - HMPREF1078_RS13180 0.72 -0.4
61,733 - HMPREF1078_RS13180 0.78 +0.1
61,771 - HMPREF1078_RS13180 0.83 +0.4
61,771 - HMPREF1078_RS13180 0.83 -1.5
61,787 - HMPREF1078_RS13180 0.85 -0.2
61,816 + HMPREF1078_RS13180 0.89 -0.5
62,018 + +0.4
62,018 + -1.8
62,018 + -0.3
62,018 + -0.8

Or see this region's nucleotide sequence