Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13090 and HMPREF1078_RS13095 are separated by 263 nucleotides HMPREF1078_RS13095 and HMPREF1078_RS13100 are separated by 3 nucleotides HMPREF1078_RS13100 and HMPREF1078_RS13105 overlap by 7 nucleotides HMPREF1078_RS13105 and HMPREF1078_RS13110 are separated by 38 nucleotides
HMPREF1078_RS13090: HMPREF1078_RS13090 - C1 family peptidase, at 44,227 to 45,621
_RS13090
HMPREF1078_RS13095: HMPREF1078_RS13095 - DUF2089 family protein, at 45,885 to 46,166
_RS13095
HMPREF1078_RS13100: HMPREF1078_RS13100 - YIP1 family protein, at 46,170 to 46,760
_RS13100
HMPREF1078_RS13105: HMPREF1078_RS13105 - HAD hydrolase-like protein, at 46,754 to 47,410
_RS13105
HMPREF1078_RS13110: HMPREF1078_RS13110 - gamma carbonic anhydrase family protein, at 47,449 to 47,970
_RS13110
Position (kb) 46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 45.201 kb on + strand, within HMPREF1078_RS13090 at 45.202 kb on - strand, within HMPREF1078_RS13090 at 45.260 kb on + strand, within HMPREF1078_RS13090 at 45.292 kb on - strand, within HMPREF1078_RS13090 at 45.292 kb on - strand, within HMPREF1078_RS13090 at 45.379 kb on - strand, within HMPREF1078_RS13090 at 45.379 kb on - strand, within HMPREF1078_RS13090 at 45.401 kb on + strand, within HMPREF1078_RS13090 at 45.504 kb on - strand at 45.626 kb on + strand at 45.664 kb on - strand at 45.679 kb on + strand at 45.705 kb on - strand at 45.756 kb on - strand at 45.816 kb on - strand at 45.821 kb on - strand at 45.871 kb on + strand at 45.878 kb on + strand at 45.879 kb on - strand at 45.992 kb on + strand, within HMPREF1078_RS13095 at 46.009 kb on + strand, within HMPREF1078_RS13095 at 46.082 kb on + strand, within HMPREF1078_RS13095 at 46.094 kb on + strand, within HMPREF1078_RS13095 at 46.095 kb on - strand, within HMPREF1078_RS13095 at 46.107 kb on + strand, within HMPREF1078_RS13095 at 46.107 kb on + strand, within HMPREF1078_RS13095 at 46.108 kb on - strand, within HMPREF1078_RS13095 at 46.113 kb on - strand, within HMPREF1078_RS13095 at 46.113 kb on - strand, within HMPREF1078_RS13095 at 46.126 kb on + strand, within HMPREF1078_RS13095 at 46.126 kb on + strand, within HMPREF1078_RS13095 at 46.127 kb on - strand, within HMPREF1078_RS13095 at 46.127 kb on - strand, within HMPREF1078_RS13095 at 46.127 kb on - strand, within HMPREF1078_RS13095 at 46.130 kb on - strand, within HMPREF1078_RS13095 at 46.150 kb on + strand at 46.151 kb on - strand at 46.155 kb on - strand at 46.169 kb on + strand at 46.170 kb on - strand at 46.262 kb on - strand, within HMPREF1078_RS13100 at 46.388 kb on + strand, within HMPREF1078_RS13100 at 46.395 kb on + strand, within HMPREF1078_RS13100 at 46.511 kb on + strand, within HMPREF1078_RS13100 at 46.531 kb on + strand, within HMPREF1078_RS13100 at 46.756 kb on - strand at 46.756 kb on - strand at 46.801 kb on + strand at 46.946 kb on - strand, within HMPREF1078_RS13105 at 46.959 kb on - strand, within HMPREF1078_RS13105 at 46.984 kb on + strand, within HMPREF1078_RS13105 at 47.028 kb on + strand, within HMPREF1078_RS13105 at 47.046 kb on + strand, within HMPREF1078_RS13105 at 47.164 kb on - strand, within HMPREF1078_RS13105 at 47.236 kb on - strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.306 kb on + strand, within HMPREF1078_RS13105 at 47.394 kb on + strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.420 kb on + strand at 47.421 kb on - strand at 47.427 kb on + strand at 47.486 kb on + strand at 47.692 kb on + strand, within HMPREF1078_RS13110
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 45,201 + HMPREF1078_RS13090 0.70 +0.4 45,202 - HMPREF1078_RS13090 0.70 +0.8 45,260 + HMPREF1078_RS13090 0.74 +1.0 45,292 - HMPREF1078_RS13090 0.76 -0.2 45,292 - HMPREF1078_RS13090 0.76 +0.6 45,379 - HMPREF1078_RS13090 0.83 +0.2 45,379 - HMPREF1078_RS13090 0.83 +1.1 45,401 + HMPREF1078_RS13090 0.84 +0.0 45,504 - -0.0 45,626 + -0.2 45,664 - -0.8 45,679 + +0.9 45,705 - +0.5 45,756 - -0.2 45,816 - -0.9 45,821 - -1.4 45,871 + -0.9 45,878 + +0.0 45,879 - -0.5 45,992 + HMPREF1078_RS13095 0.38 -0.5 46,009 + HMPREF1078_RS13095 0.44 -0.6 46,082 + HMPREF1078_RS13095 0.70 +0.4 46,094 + HMPREF1078_RS13095 0.74 -0.1 46,095 - HMPREF1078_RS13095 0.74 -1.4 46,107 + HMPREF1078_RS13095 0.79 +0.1 46,107 + HMPREF1078_RS13095 0.79 -0.4 46,108 - HMPREF1078_RS13095 0.79 -0.7 46,113 - HMPREF1078_RS13095 0.81 +0.5 46,113 - HMPREF1078_RS13095 0.81 +0.0 46,126 + HMPREF1078_RS13095 0.85 -0.9 46,126 + HMPREF1078_RS13095 0.85 -1.5 46,127 - HMPREF1078_RS13095 0.86 +1.4 46,127 - HMPREF1078_RS13095 0.86 -0.5 46,127 - HMPREF1078_RS13095 0.86 +0.5 46,130 - HMPREF1078_RS13095 0.87 -0.9 46,150 + +1.1 46,151 - -2.2 46,155 - -0.3 46,169 + -1.7 46,170 - -1.1 46,262 - HMPREF1078_RS13100 0.16 -0.8 46,388 + HMPREF1078_RS13100 0.37 -1.8 46,395 + HMPREF1078_RS13100 0.38 -0.0 46,511 + HMPREF1078_RS13100 0.58 -2.5 46,531 + HMPREF1078_RS13100 0.61 +0.2 46,756 - -0.1 46,756 - +0.5 46,801 + -0.9 46,946 - HMPREF1078_RS13105 0.29 -0.2 46,959 - HMPREF1078_RS13105 0.31 -1.1 46,984 + HMPREF1078_RS13105 0.35 -0.4 47,028 + HMPREF1078_RS13105 0.42 -0.8 47,046 + HMPREF1078_RS13105 0.44 +0.6 47,164 - HMPREF1078_RS13105 0.62 -0.8 47,236 - HMPREF1078_RS13105 0.73 +0.4 47,282 + HMPREF1078_RS13105 0.80 -0.6 47,282 + HMPREF1078_RS13105 0.80 -1.5 47,306 + HMPREF1078_RS13105 0.84 -0.4 47,394 + +0.1 47,395 - +0.4 47,395 - -0.4 47,395 - -0.1 47,420 + -0.5 47,421 - +0.3 47,427 + -0.1 47,486 + +1.2 47,692 + HMPREF1078_RS13110 0.47 +0.9
Or see this region's nucleotide sequence