Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12785 and HMPREF1078_RS12790 are separated by 96 nucleotides HMPREF1078_RS12790 and HMPREF1078_RS12795 are separated by 170 nucleotides HMPREF1078_RS12795 and HMPREF1078_RS12800 are separated by 14 nucleotides
HMPREF1078_RS12785: HMPREF1078_RS12785 - S8 family serine peptidase, at 584,175 to 585,545
_RS12785
HMPREF1078_RS12790: HMPREF1078_RS12790 - Lrp/AsnC ligand binding domain-containing protein, at 585,642 to 586,109
_RS12790
HMPREF1078_RS12795: HMPREF1078_RS12795 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 586,280 to 587,005
_RS12795
HMPREF1078_RS12800: HMPREF1078_RS12800 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 587,020 to 587,607
_RS12800
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 584.823 kb on - strand, within HMPREF1078_RS12785 at 584.823 kb on - strand, within HMPREF1078_RS12785 at 584.834 kb on - strand, within HMPREF1078_RS12785 at 584.874 kb on - strand, within HMPREF1078_RS12785 at 584.944 kb on - strand, within HMPREF1078_RS12785 at 584.962 kb on - strand, within HMPREF1078_RS12785 at 585.006 kb on - strand, within HMPREF1078_RS12785 at 585.121 kb on - strand, within HMPREF1078_RS12785 at 585.246 kb on - strand, within HMPREF1078_RS12785 at 585.332 kb on - strand, within HMPREF1078_RS12785 at 585.332 kb on - strand, within HMPREF1078_RS12785 at 585.479 kb on - strand at 585.496 kb on - strand at 585.555 kb on - strand at 585.582 kb on - strand at 585.582 kb on - strand at 585.591 kb on - strand at 585.626 kb on + strand at 585.626 kb on + strand at 585.626 kb on + strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.628 kb on + strand at 585.628 kb on + strand at 585.629 kb on - strand at 585.629 kb on - strand at 585.629 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.654 kb on - strand at 585.663 kb on - strand at 585.678 kb on + strand at 585.679 kb on - strand at 585.679 kb on - strand at 585.726 kb on + strand, within HMPREF1078_RS12790 at 585.735 kb on + strand, within HMPREF1078_RS12790 at 585.735 kb on + strand, within HMPREF1078_RS12790 at 585.781 kb on + strand, within HMPREF1078_RS12790 at 585.781 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.784 kb on - strand, within HMPREF1078_RS12790 at 585.784 kb on - strand, within HMPREF1078_RS12790 at 585.800 kb on + strand, within HMPREF1078_RS12790 at 585.816 kb on - strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.872 kb on - strand, within HMPREF1078_RS12790 at 585.872 kb on - strand, within HMPREF1078_RS12790 at 585.895 kb on - strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.909 kb on - strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.919 kb on + strand, within HMPREF1078_RS12790 at 585.919 kb on + strand, within HMPREF1078_RS12790 at 585.938 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.942 kb on - strand, within HMPREF1078_RS12790 at 585.942 kb on - strand, within HMPREF1078_RS12790 at 585.947 kb on - strand, within HMPREF1078_RS12790 at 585.971 kb on + strand, within HMPREF1078_RS12790 at 585.971 kb on + strand, within HMPREF1078_RS12790 at 585.972 kb on - strand, within HMPREF1078_RS12790 at 585.972 kb on - strand, within HMPREF1078_RS12790 at 586.068 kb on - strand at 586.068 kb on - strand at 586.077 kb on + strand at 586.115 kb on - strand at 586.115 kb on - strand at 586.118 kb on + strand at 586.119 kb on - strand at 586.119 kb on - strand at 586.124 kb on - strand at 586.124 kb on - strand at 586.137 kb on - strand at 586.147 kb on + strand at 586.159 kb on - strand at 586.159 kb on - strand at 586.161 kb on - strand at 586.173 kb on + strand at 586.234 kb on - strand at 586.237 kb on + strand at 586.238 kb on - strand at 586.263 kb on + strand at 586.264 kb on - strand at 586.307 kb on + strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.343 kb on - strand at 586.343 kb on - strand at 586.411 kb on + strand, within HMPREF1078_RS12795 at 586.414 kb on - strand, within HMPREF1078_RS12795 at 586.414 kb on - strand, within HMPREF1078_RS12795 at 586.523 kb on - strand, within HMPREF1078_RS12795 at 586.541 kb on - strand, within HMPREF1078_RS12795 at 586.541 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.565 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.600 kb on + strand, within HMPREF1078_RS12795 at 586.601 kb on - strand, within HMPREF1078_RS12795 at 586.601 kb on - strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.605 kb on - strand, within HMPREF1078_RS12795 at 586.611 kb on + strand, within HMPREF1078_RS12795 at 586.637 kb on - strand, within HMPREF1078_RS12795 at 586.725 kb on + strand, within HMPREF1078_RS12795 at 586.725 kb on + strand, within HMPREF1078_RS12795 at 586.726 kb on - strand, within HMPREF1078_RS12795 at 586.737 kb on + strand, within HMPREF1078_RS12795 at 586.738 kb on - strand, within HMPREF1078_RS12795 at 586.765 kb on - strand, within HMPREF1078_RS12795 at 586.825 kb on + strand, within HMPREF1078_RS12795 at 586.904 kb on - strand, within HMPREF1078_RS12795 at 586.954 kb on + strand at 586.954 kb on + strand at 586.954 kb on + strand at 586.954 kb on + strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.957 kb on + strand at 586.958 kb on - strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.964 kb on - strand at 586.968 kb on - strand at 586.968 kb on - strand at 586.978 kb on + strand at 586.988 kb on + strand at 586.989 kb on - strand at 586.989 kb on - strand at 586.989 kb on - strand at 587.013 kb on + strand at 587.016 kb on + strand at 587.016 kb on + strand at 587.016 kb on + strand at 587.017 kb on - strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.030 kb on - strand at 587.030 kb on - strand at 587.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 584,823 - HMPREF1078_RS12785 0.47 +0.2 584,823 - HMPREF1078_RS12785 0.47 -0.1 584,834 - HMPREF1078_RS12785 0.48 +0.2 584,874 - HMPREF1078_RS12785 0.51 -0.9 584,944 - HMPREF1078_RS12785 0.56 +0.1 584,962 - HMPREF1078_RS12785 0.57 -1.6 585,006 - HMPREF1078_RS12785 0.61 +0.4 585,121 - HMPREF1078_RS12785 0.69 -2.4 585,246 - HMPREF1078_RS12785 0.78 -0.5 585,332 - HMPREF1078_RS12785 0.84 +0.8 585,332 - HMPREF1078_RS12785 0.84 -3.0 585,479 - +0.1 585,496 - +0.8 585,555 - -1.0 585,582 - -0.3 585,582 - +0.4 585,591 - -0.1 585,626 + +0.3 585,626 + -0.0 585,626 + +0.4 585,627 - -1.2 585,627 - -0.8 585,627 - -0.1 585,627 - -0.9 585,628 + -1.6 585,628 + -0.2 585,629 - +1.4 585,629 - -0.1 585,629 - +0.5 585,634 - +0.4 585,634 - -0.2 585,634 - +0.2 585,634 - +0.1 585,654 - -0.3 585,663 - +0.1 585,678 + -1.0 585,679 - +1.4 585,679 - -0.1 585,726 + HMPREF1078_RS12790 0.18 -0.3 585,735 + HMPREF1078_RS12790 0.20 -1.7 585,735 + HMPREF1078_RS12790 0.20 -1.5 585,781 + HMPREF1078_RS12790 0.30 +0.4 585,781 + HMPREF1078_RS12790 0.30 -0.3 585,783 + HMPREF1078_RS12790 0.30 -2.9 585,783 + HMPREF1078_RS12790 0.30 -1.3 585,783 + HMPREF1078_RS12790 0.30 +0.3 585,784 - HMPREF1078_RS12790 0.30 -1.1 585,784 - HMPREF1078_RS12790 0.30 -1.0 585,800 + HMPREF1078_RS12790 0.34 -0.5 585,816 - HMPREF1078_RS12790 0.37 -0.8 585,871 + HMPREF1078_RS12790 0.49 +1.2 585,871 + HMPREF1078_RS12790 0.49 -0.0 585,871 + HMPREF1078_RS12790 0.49 -0.2 585,871 + HMPREF1078_RS12790 0.49 -0.4 585,872 - HMPREF1078_RS12790 0.49 -1.3 585,872 - HMPREF1078_RS12790 0.49 +0.1 585,895 - HMPREF1078_RS12790 0.54 -1.5 585,904 + HMPREF1078_RS12790 0.56 -0.9 585,904 + HMPREF1078_RS12790 0.56 -0.6 585,904 + HMPREF1078_RS12790 0.56 -0.6 585,904 + HMPREF1078_RS12790 0.56 +1.2 585,905 - HMPREF1078_RS12790 0.56 -1.5 585,905 - HMPREF1078_RS12790 0.56 -1.3 585,905 - HMPREF1078_RS12790 0.56 -1.1 585,905 - HMPREF1078_RS12790 0.56 -0.5 585,908 + HMPREF1078_RS12790 0.57 -0.0 585,908 + HMPREF1078_RS12790 0.57 -2.3 585,908 + HMPREF1078_RS12790 0.57 -3.4 585,908 + HMPREF1078_RS12790 0.57 -1.2 585,908 + HMPREF1078_RS12790 0.57 -1.3 585,909 - HMPREF1078_RS12790 0.57 +0.4 585,917 + HMPREF1078_RS12790 0.59 -0.9 585,917 + HMPREF1078_RS12790 0.59 -0.6 585,917 + HMPREF1078_RS12790 0.59 -0.8 585,918 - HMPREF1078_RS12790 0.59 -0.2 585,918 - HMPREF1078_RS12790 0.59 +0.3 585,918 - HMPREF1078_RS12790 0.59 +0.4 585,919 + HMPREF1078_RS12790 0.59 -1.0 585,919 + HMPREF1078_RS12790 0.59 -0.5 585,938 + HMPREF1078_RS12790 0.63 -3.3 585,941 + HMPREF1078_RS12790 0.64 -0.9 585,941 + HMPREF1078_RS12790 0.64 -1.1 585,941 + HMPREF1078_RS12790 0.64 -0.2 585,942 - HMPREF1078_RS12790 0.64 +0.5 585,942 - HMPREF1078_RS12790 0.64 -1.9 585,947 - HMPREF1078_RS12790 0.65 +0.0 585,971 + HMPREF1078_RS12790 0.70 +0.8 585,971 + HMPREF1078_RS12790 0.70 -1.7 585,972 - HMPREF1078_RS12790 0.71 -1.6 585,972 - HMPREF1078_RS12790 0.71 -2.2 586,068 - -1.6 586,068 - -1.9 586,077 + -0.5 586,115 - -0.5 586,115 - -1.4 586,118 + +0.5 586,119 - -0.0 586,119 - -1.1 586,124 - +0.3 586,124 - +1.7 586,137 - +0.1 586,147 + -0.8 586,159 - -0.7 586,159 - +0.1 586,161 - +0.6 586,173 + -1.6 586,234 - -0.6 586,237 + +0.8 586,238 - -0.6 586,263 + +0.4 586,264 - -0.3 586,307 + -1.4 586,308 - -1.5 586,308 - -0.3 586,308 - -0.1 586,308 - +1.5 586,308 - +0.5 586,343 - +0.6 586,343 - -0.2 586,411 + HMPREF1078_RS12795 0.18 -0.3 586,414 - HMPREF1078_RS12795 0.18 -1.6 586,414 - HMPREF1078_RS12795 0.18 -0.2 586,523 - HMPREF1078_RS12795 0.33 +0.0 586,541 - HMPREF1078_RS12795 0.36 +0.5 586,541 - HMPREF1078_RS12795 0.36 +0.4 586,549 - HMPREF1078_RS12795 0.37 -0.1 586,549 - HMPREF1078_RS12795 0.37 -0.5 586,549 - HMPREF1078_RS12795 0.37 -0.8 586,549 - HMPREF1078_RS12795 0.37 -0.1 586,565 - HMPREF1078_RS12795 0.39 +0.0 586,592 - HMPREF1078_RS12795 0.43 -0.6 586,592 - HMPREF1078_RS12795 0.43 -2.0 586,592 - HMPREF1078_RS12795 0.43 -1.0 586,600 + HMPREF1078_RS12795 0.44 +0.2 586,601 - HMPREF1078_RS12795 0.44 -0.6 586,601 - HMPREF1078_RS12795 0.44 +0.1 586,604 + HMPREF1078_RS12795 0.45 -0.3 586,604 + HMPREF1078_RS12795 0.45 -0.1 586,604 + HMPREF1078_RS12795 0.45 -0.3 586,605 - HMPREF1078_RS12795 0.45 -1.0 586,611 + HMPREF1078_RS12795 0.46 +0.5 586,637 - HMPREF1078_RS12795 0.49 +0.8 586,725 + HMPREF1078_RS12795 0.61 -0.6 586,725 + HMPREF1078_RS12795 0.61 -0.7 586,726 - HMPREF1078_RS12795 0.61 -0.1 586,737 + HMPREF1078_RS12795 0.63 -1.0 586,738 - HMPREF1078_RS12795 0.63 +1.0 586,765 - HMPREF1078_RS12795 0.67 -0.2 586,825 + HMPREF1078_RS12795 0.75 +0.7 586,904 - HMPREF1078_RS12795 0.86 -0.7 586,954 + +0.0 586,954 + -1.3 586,954 + -1.0 586,954 + +0.1 586,955 - -0.3 586,955 - -0.5 586,955 - -0.1 586,955 - -2.2 586,957 + -1.0 586,958 - -0.4 586,963 + -1.5 586,963 + -0.6 586,963 + -0.5 586,963 + +0.0 586,964 - -0.2 586,968 - -1.4 586,968 - +0.5 586,978 + -0.2 586,988 + -0.7 586,989 - -1.0 586,989 - -0.3 586,989 - -0.6 587,013 + -0.2 587,016 + -0.0 587,016 + -0.7 587,016 + -2.0 587,017 - +1.0 587,026 + +0.7 587,026 + -0.6 587,026 + -1.0 587,026 + -0.0 587,029 + +0.5 587,029 + -0.6 587,029 + +1.3 587,029 + +0.5 587,029 + +0.5 587,030 - -1.4 587,030 - -0.8 587,030 - -0.0
Or see this region's nucleotide sequence