Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11315 and HMPREF1078_RS11320 are separated by 96 nucleotides HMPREF1078_RS11320 and HMPREF1078_RS11325 are separated by 95 nucleotides HMPREF1078_RS11325 and HMPREF1078_RS11330 are separated by 21 nucleotides HMPREF1078_RS11330 and HMPREF1078_RS11335 are separated by 25 nucleotides HMPREF1078_RS11335 and HMPREF1078_RS11340 are separated by 296 nucleotides
HMPREF1078_RS11315: HMPREF1078_RS11315 - argininosuccinate lyase, at 183,880 to 185,217
_RS11315
HMPREF1078_RS11320: HMPREF1078_RS11320 - hypothetical protein, at 185,314 to 185,679
_RS11320
HMPREF1078_RS11325: HMPREF1078_RS11325 - tRNA-Gly, at 185,775 to 185,847
_RS11325
HMPREF1078_RS11330: HMPREF1078_RS11330 - tRNA-Leu, at 185,869 to 185,953
_RS11330
HMPREF1078_RS11335: HMPREF1078_RS11335 - tRNA-Gly, at 185,979 to 186,051
_RS11335
HMPREF1078_RS11340: HMPREF1078_RS11340 - site-specific integrase, at 186,348 to 187,550
_RS11340
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.995 kb on - strand, within HMPREF1078_RS11315 at 185.016 kb on + strand, within HMPREF1078_RS11315 at 185.016 kb on + strand, within HMPREF1078_RS11315 at 185.016 kb on + strand, within HMPREF1078_RS11315 at 185.016 kb on + strand, within HMPREF1078_RS11315 at 185.016 kb on + strand, within HMPREF1078_RS11315 at 185.017 kb on - strand, within HMPREF1078_RS11315 at 185.017 kb on - strand, within HMPREF1078_RS11315 at 185.035 kb on + strand, within HMPREF1078_RS11315 at 185.036 kb on - strand, within HMPREF1078_RS11315 at 185.046 kb on - strand, within HMPREF1078_RS11315 at 185.097 kb on + strand at 185.124 kb on - strand at 185.157 kb on + strand at 185.158 kb on - strand at 185.158 kb on - strand at 185.178 kb on + strand at 185.215 kb on + strand at 185.215 kb on + strand at 185.237 kb on + strand at 185.246 kb on + strand at 185.246 kb on + strand at 185.247 kb on - strand at 185.250 kb on + strand at 185.250 kb on + strand at 185.250 kb on + strand at 185.250 kb on + strand at 185.250 kb on + strand at 185.251 kb on - strand at 185.251 kb on - strand at 185.252 kb on + strand at 185.253 kb on - strand at 185.253 kb on - strand at 185.253 kb on - strand at 185.253 kb on - strand at 185.253 kb on - strand at 185.258 kb on + strand at 185.258 kb on + strand at 185.259 kb on - strand at 185.259 kb on - strand at 185.259 kb on - strand at 185.259 kb on - strand at 185.292 kb on + strand at 185.294 kb on + strand at 185.294 kb on + strand at 185.294 kb on + strand at 185.294 kb on + strand at 185.295 kb on - strand at 185.299 kb on + strand at 185.299 kb on + strand at 185.309 kb on + strand at 185.310 kb on - strand at 185.321 kb on + strand at 185.322 kb on - strand at 185.351 kb on + strand, within HMPREF1078_RS11320 at 185.352 kb on - strand, within HMPREF1078_RS11320 at 185.357 kb on + strand, within HMPREF1078_RS11320 at 185.357 kb on + strand, within HMPREF1078_RS11320 at 185.357 kb on + strand, within HMPREF1078_RS11320 at 185.357 kb on + strand, within HMPREF1078_RS11320 at 185.357 kb on + strand, within HMPREF1078_RS11320 at 185.358 kb on - strand, within HMPREF1078_RS11320 at 185.359 kb on + strand, within HMPREF1078_RS11320 at 185.359 kb on + strand, within HMPREF1078_RS11320 at 185.359 kb on + strand, within HMPREF1078_RS11320 at 185.359 kb on + strand, within HMPREF1078_RS11320 at 185.359 kb on + strand, within HMPREF1078_RS11320 at 185.360 kb on - strand, within HMPREF1078_RS11320 at 185.360 kb on - strand, within HMPREF1078_RS11320 at 185.360 kb on - strand, within HMPREF1078_RS11320 at 185.379 kb on + strand, within HMPREF1078_RS11320 at 185.380 kb on - strand, within HMPREF1078_RS11320 at 185.380 kb on - strand, within HMPREF1078_RS11320 at 185.388 kb on + strand, within HMPREF1078_RS11320 at 185.429 kb on + strand, within HMPREF1078_RS11320 at 185.430 kb on - strand, within HMPREF1078_RS11320 at 185.447 kb on - strand, within HMPREF1078_RS11320 at 185.462 kb on - strand, within HMPREF1078_RS11320 at 185.464 kb on + strand, within HMPREF1078_RS11320 at 185.464 kb on + strand, within HMPREF1078_RS11320 at 185.465 kb on - strand, within HMPREF1078_RS11320 at 185.465 kb on - strand, within HMPREF1078_RS11320 at 185.505 kb on + strand, within HMPREF1078_RS11320 at 185.514 kb on - strand, within HMPREF1078_RS11320 at 185.514 kb on - strand, within HMPREF1078_RS11320 at 185.514 kb on - strand, within HMPREF1078_RS11320 at 185.563 kb on + strand, within HMPREF1078_RS11320 at 185.563 kb on + strand, within HMPREF1078_RS11320 at 185.564 kb on - strand, within HMPREF1078_RS11320 at 185.626 kb on + strand, within HMPREF1078_RS11320 at 185.630 kb on - strand, within HMPREF1078_RS11320 at 185.974 kb on - strand at 185.999 kb on - strand, within HMPREF1078_RS11335 at 186.083 kb on + strand at 186.096 kb on + strand at 186.102 kb on - strand at 186.157 kb on + strand at 186.157 kb on + strand at 186.158 kb on - strand at 186.173 kb on - strand at 186.173 kb on - strand at 186.184 kb on + strand at 186.213 kb on - strand at 186.218 kb on + strand at 186.219 kb on - strand at 186.219 kb on - strand at 186.235 kb on + strand at 186.250 kb on + strand at 186.276 kb on - strand at 186.282 kb on - strand at 186.363 kb on - strand at 186.363 kb on - strand at 186.375 kb on + strand at 186.376 kb on - strand at 186.376 kb on - strand at 186.391 kb on + strand at 186.392 kb on - strand at 186.395 kb on + strand at 186.395 kb on + strand at 186.467 kb on + strand at 186.468 kb on - strand at 186.468 kb on - strand at 186.468 kb on - strand at 186.501 kb on - strand, within HMPREF1078_RS11340 at 186.501 kb on - strand, within HMPREF1078_RS11340 at 186.506 kb on + strand, within HMPREF1078_RS11340 at 186.507 kb on - strand, within HMPREF1078_RS11340 at 186.524 kb on + strand, within HMPREF1078_RS11340 at 186.524 kb on + strand, within HMPREF1078_RS11340 at 186.524 kb on + strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.525 kb on - strand, within HMPREF1078_RS11340 at 186.529 kb on + strand, within HMPREF1078_RS11340 at 186.589 kb on + strand, within HMPREF1078_RS11340 at 186.590 kb on - strand, within HMPREF1078_RS11340 at 186.590 kb on - strand, within HMPREF1078_RS11340 at 186.590 kb on - strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.623 kb on + strand, within HMPREF1078_RS11340 at 186.624 kb on - strand, within HMPREF1078_RS11340 at 186.624 kb on - strand, within HMPREF1078_RS11340 at 186.626 kb on - strand, within HMPREF1078_RS11340 at 186.655 kb on + strand, within HMPREF1078_RS11340 at 186.655 kb on + strand, within HMPREF1078_RS11340 at 186.656 kb on - strand, within HMPREF1078_RS11340 at 186.661 kb on + strand, within HMPREF1078_RS11340 at 186.661 kb on + strand, within HMPREF1078_RS11340 at 186.662 kb on - strand, within HMPREF1078_RS11340 at 186.681 kb on + strand, within HMPREF1078_RS11340 at 186.681 kb on + strand, within HMPREF1078_RS11340 at 186.685 kb on + strand, within HMPREF1078_RS11340 at 186.686 kb on - strand, within HMPREF1078_RS11340 at 186.686 kb on - strand, within HMPREF1078_RS11340 at 186.694 kb on + strand, within HMPREF1078_RS11340 at 186.712 kb on + strand, within HMPREF1078_RS11340 at 186.713 kb on - strand, within HMPREF1078_RS11340 at 186.717 kb on + strand, within HMPREF1078_RS11340 at 186.718 kb on - strand, within HMPREF1078_RS11340 at 186.752 kb on - strand, within HMPREF1078_RS11340 at 186.754 kb on + strand, within HMPREF1078_RS11340 at 186.761 kb on + strand, within HMPREF1078_RS11340 at 186.762 kb on - strand, within HMPREF1078_RS11340 at 186.899 kb on - strand, within HMPREF1078_RS11340 at 186.916 kb on + strand, within HMPREF1078_RS11340 at 186.959 kb on + strand, within HMPREF1078_RS11340 at 186.964 kb on + strand, within HMPREF1078_RS11340 at 186.993 kb on - strand, within HMPREF1078_RS11340 at 187.010 kb on + strand, within HMPREF1078_RS11340 at 187.050 kb on - strand, within HMPREF1078_RS11340
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 184,995 - HMPREF1078_RS11315 0.83 +1.2 185,016 + HMPREF1078_RS11315 0.85 +0.2 185,016 + HMPREF1078_RS11315 0.85 -1.3 185,016 + HMPREF1078_RS11315 0.85 +0.3 185,016 + HMPREF1078_RS11315 0.85 +0.3 185,016 + HMPREF1078_RS11315 0.85 -0.2 185,017 - HMPREF1078_RS11315 0.85 -0.4 185,017 - HMPREF1078_RS11315 0.85 -0.4 185,035 + HMPREF1078_RS11315 0.86 +0.7 185,036 - HMPREF1078_RS11315 0.86 +1.4 185,046 - HMPREF1078_RS11315 0.87 -1.8 185,097 + +0.0 185,124 - +0.7 185,157 + -0.4 185,158 - -1.2 185,158 - +1.1 185,178 + -0.1 185,215 + +0.3 185,215 + +0.1 185,237 + -0.9 185,246 + -0.6 185,246 + -2.0 185,247 - +0.0 185,250 + -0.8 185,250 + -2.3 185,250 + -2.1 185,250 + -1.5 185,250 + +0.4 185,251 - -2.4 185,251 - +0.2 185,252 + -0.9 185,253 - -0.4 185,253 - -0.1 185,253 - +1.0 185,253 - +0.2 185,253 - -0.7 185,258 + +0.2 185,258 + -0.7 185,259 - -1.5 185,259 - -0.2 185,259 - +0.3 185,259 - +0.5 185,292 + +0.4 185,294 + -0.7 185,294 + -1.0 185,294 + -1.4 185,294 + -0.8 185,295 - -1.9 185,299 + +1.0 185,299 + +0.2 185,309 + -1.5 185,310 - +0.5 185,321 + -0.3 185,322 - -0.6 185,351 + HMPREF1078_RS11320 0.10 +0.2 185,352 - HMPREF1078_RS11320 0.10 -2.5 185,357 + HMPREF1078_RS11320 0.12 -0.8 185,357 + HMPREF1078_RS11320 0.12 -0.2 185,357 + HMPREF1078_RS11320 0.12 -2.6 185,357 + HMPREF1078_RS11320 0.12 -0.6 185,357 + HMPREF1078_RS11320 0.12 -0.6 185,358 - HMPREF1078_RS11320 0.12 -2.7 185,359 + HMPREF1078_RS11320 0.12 -0.3 185,359 + HMPREF1078_RS11320 0.12 +0.1 185,359 + HMPREF1078_RS11320 0.12 -1.2 185,359 + HMPREF1078_RS11320 0.12 -0.9 185,359 + HMPREF1078_RS11320 0.12 +0.1 185,360 - HMPREF1078_RS11320 0.13 -0.2 185,360 - HMPREF1078_RS11320 0.13 +0.3 185,360 - HMPREF1078_RS11320 0.13 -0.7 185,379 + HMPREF1078_RS11320 0.18 -1.2 185,380 - HMPREF1078_RS11320 0.18 -1.0 185,380 - HMPREF1078_RS11320 0.18 -0.5 185,388 + HMPREF1078_RS11320 0.20 -1.4 185,429 + HMPREF1078_RS11320 0.31 +0.5 185,430 - HMPREF1078_RS11320 0.32 -0.0 185,447 - HMPREF1078_RS11320 0.36 +0.8 185,462 - HMPREF1078_RS11320 0.40 +0.8 185,464 + HMPREF1078_RS11320 0.41 -0.4 185,464 + HMPREF1078_RS11320 0.41 +1.7 185,465 - HMPREF1078_RS11320 0.41 +0.4 185,465 - HMPREF1078_RS11320 0.41 -1.8 185,505 + HMPREF1078_RS11320 0.52 -0.5 185,514 - HMPREF1078_RS11320 0.55 +1.7 185,514 - HMPREF1078_RS11320 0.55 -2.6 185,514 - HMPREF1078_RS11320 0.55 -1.6 185,563 + HMPREF1078_RS11320 0.68 -0.1 185,563 + HMPREF1078_RS11320 0.68 -1.2 185,564 - HMPREF1078_RS11320 0.68 +1.8 185,626 + HMPREF1078_RS11320 0.85 -1.9 185,630 - HMPREF1078_RS11320 0.86 +0.6 185,974 - -0.0 185,999 - HMPREF1078_RS11335 0.27 -0.7 186,083 + -1.2 186,096 + +0.7 186,102 - +1.1 186,157 + -0.6 186,157 + -1.2 186,158 - -0.1 186,173 - -2.5 186,173 - -0.6 186,184 + -1.0 186,213 - -0.0 186,218 + -0.2 186,219 - -0.3 186,219 - +0.1 186,235 + +1.3 186,250 + -0.1 186,276 - +0.1 186,282 - +1.0 186,363 - +0.2 186,363 - -1.1 186,375 + +0.4 186,376 - -0.4 186,376 - +0.0 186,391 + -0.7 186,392 - +0.4 186,395 + -0.6 186,395 + -0.5 186,467 + -0.5 186,468 - -0.9 186,468 - -1.0 186,468 - +0.3 186,501 - HMPREF1078_RS11340 0.13 +0.1 186,501 - HMPREF1078_RS11340 0.13 +1.5 186,506 + HMPREF1078_RS11340 0.13 -1.4 186,507 - HMPREF1078_RS11340 0.13 +1.2 186,524 + HMPREF1078_RS11340 0.15 +0.1 186,524 + HMPREF1078_RS11340 0.15 -0.1 186,524 + HMPREF1078_RS11340 0.15 -0.5 186,525 - HMPREF1078_RS11340 0.15 -0.3 186,525 - HMPREF1078_RS11340 0.15 -0.5 186,525 - HMPREF1078_RS11340 0.15 +0.9 186,525 - HMPREF1078_RS11340 0.15 +0.2 186,525 - HMPREF1078_RS11340 0.15 +0.3 186,525 - HMPREF1078_RS11340 0.15 +1.5 186,529 + HMPREF1078_RS11340 0.15 -0.2 186,589 + HMPREF1078_RS11340 0.20 +0.0 186,590 - HMPREF1078_RS11340 0.20 -1.0 186,590 - HMPREF1078_RS11340 0.20 -1.8 186,590 - HMPREF1078_RS11340 0.20 -2.7 186,623 + HMPREF1078_RS11340 0.23 -0.4 186,623 + HMPREF1078_RS11340 0.23 -0.3 186,623 + HMPREF1078_RS11340 0.23 -0.4 186,623 + HMPREF1078_RS11340 0.23 -0.3 186,623 + HMPREF1078_RS11340 0.23 +0.2 186,623 + HMPREF1078_RS11340 0.23 -2.6 186,623 + HMPREF1078_RS11340 0.23 +0.6 186,623 + HMPREF1078_RS11340 0.23 +0.5 186,624 - HMPREF1078_RS11340 0.23 +0.4 186,624 - HMPREF1078_RS11340 0.23 -2.6 186,626 - HMPREF1078_RS11340 0.23 +1.5 186,655 + HMPREF1078_RS11340 0.26 -1.2 186,655 + HMPREF1078_RS11340 0.26 -0.1 186,656 - HMPREF1078_RS11340 0.26 +0.6 186,661 + HMPREF1078_RS11340 0.26 -1.0 186,661 + HMPREF1078_RS11340 0.26 +0.2 186,662 - HMPREF1078_RS11340 0.26 -1.5 186,681 + HMPREF1078_RS11340 0.28 +0.5 186,681 + HMPREF1078_RS11340 0.28 -0.9 186,685 + HMPREF1078_RS11340 0.28 -0.4 186,686 - HMPREF1078_RS11340 0.28 -1.1 186,686 - HMPREF1078_RS11340 0.28 -0.8 186,694 + HMPREF1078_RS11340 0.29 +1.0 186,712 + HMPREF1078_RS11340 0.30 -0.3 186,713 - HMPREF1078_RS11340 0.30 -0.9 186,717 + HMPREF1078_RS11340 0.31 -0.2 186,718 - HMPREF1078_RS11340 0.31 -0.6 186,752 - HMPREF1078_RS11340 0.34 -0.2 186,754 + HMPREF1078_RS11340 0.34 -1.7 186,761 + HMPREF1078_RS11340 0.34 -0.7 186,762 - HMPREF1078_RS11340 0.34 -0.9 186,899 - HMPREF1078_RS11340 0.46 -2.3 186,916 + HMPREF1078_RS11340 0.47 -0.6 186,959 + HMPREF1078_RS11340 0.51 -0.0 186,964 + HMPREF1078_RS11340 0.51 +0.3 186,993 - HMPREF1078_RS11340 0.54 -0.6 187,010 + HMPREF1078_RS11340 0.55 -1.2 187,050 - HMPREF1078_RS11340 0.58 -0.7
Or see this region's nucleotide sequence