Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10210 and HMPREF1078_RS10215 are separated by 9 nucleotides HMPREF1078_RS10215 and HMPREF1078_RS10220 are separated by 2 nucleotides
HMPREF1078_RS10210: HMPREF1078_RS10210 - ABC transporter permease, at 668,834 to 670,054
_RS10210
HMPREF1078_RS10215: HMPREF1078_RS10215 - ABC transporter permease, at 670,064 to 671,263
_RS10215
HMPREF1078_RS10220: HMPREF1078_RS10220 - efflux RND transporter periplasmic adaptor subunit, at 671,266 to 672,261
_RS10220
Position (kb) 670
671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 669.229 kb on + strand, within HMPREF1078_RS10210 at 669.230 kb on - strand, within HMPREF1078_RS10210 at 669.230 kb on - strand, within HMPREF1078_RS10210 at 669.237 kb on + strand, within HMPREF1078_RS10210 at 669.238 kb on - strand, within HMPREF1078_RS10210 at 669.239 kb on + strand, within HMPREF1078_RS10210 at 669.240 kb on - strand, within HMPREF1078_RS10210 at 669.290 kb on + strand, within HMPREF1078_RS10210 at 669.291 kb on - strand, within HMPREF1078_RS10210 at 669.291 kb on - strand, within HMPREF1078_RS10210 at 669.313 kb on - strand, within HMPREF1078_RS10210 at 669.319 kb on + strand, within HMPREF1078_RS10210 at 669.319 kb on + strand, within HMPREF1078_RS10210 at 669.320 kb on - strand, within HMPREF1078_RS10210 at 669.324 kb on + strand, within HMPREF1078_RS10210 at 669.431 kb on - strand, within HMPREF1078_RS10210 at 669.522 kb on + strand, within HMPREF1078_RS10210 at 669.522 kb on + strand, within HMPREF1078_RS10210 at 669.523 kb on - strand, within HMPREF1078_RS10210 at 669.564 kb on - strand, within HMPREF1078_RS10210 at 669.612 kb on + strand, within HMPREF1078_RS10210 at 669.667 kb on - strand, within HMPREF1078_RS10210 at 669.669 kb on + strand, within HMPREF1078_RS10210 at 669.670 kb on - strand, within HMPREF1078_RS10210 at 669.670 kb on - strand, within HMPREF1078_RS10210 at 669.693 kb on + strand, within HMPREF1078_RS10210 at 669.693 kb on + strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.694 kb on - strand, within HMPREF1078_RS10210 at 669.788 kb on - strand, within HMPREF1078_RS10210 at 669.914 kb on - strand, within HMPREF1078_RS10210 at 669.914 kb on - strand, within HMPREF1078_RS10210 at 669.933 kb on + strand at 669.934 kb on - strand at 669.937 kb on + strand at 669.937 kb on + strand at 669.938 kb on - strand at 669.939 kb on + strand at 669.939 kb on + strand at 669.939 kb on + strand at 669.945 kb on + strand at 669.996 kb on + strand at 669.996 kb on + strand at 669.997 kb on - strand at 670.029 kb on - strand at 670.029 kb on - strand at 670.037 kb on + strand at 670.038 kb on - strand at 670.038 kb on - strand at 670.041 kb on - strand at 670.048 kb on + strand at 670.055 kb on - strand at 670.055 kb on - strand at 670.164 kb on + strand at 670.165 kb on - strand at 670.215 kb on + strand, within HMPREF1078_RS10215 at 670.216 kb on - strand, within HMPREF1078_RS10215 at 670.218 kb on - strand, within HMPREF1078_RS10215 at 670.218 kb on - strand, within HMPREF1078_RS10215 at 670.248 kb on + strand, within HMPREF1078_RS10215 at 670.249 kb on - strand, within HMPREF1078_RS10215 at 670.257 kb on + strand, within HMPREF1078_RS10215 at 670.258 kb on - strand, within HMPREF1078_RS10215 at 670.258 kb on - strand, within HMPREF1078_RS10215 at 670.345 kb on + strand, within HMPREF1078_RS10215 at 670.345 kb on + strand, within HMPREF1078_RS10215 at 670.346 kb on - strand, within HMPREF1078_RS10215 at 670.352 kb on - strand, within HMPREF1078_RS10215 at 670.354 kb on + strand, within HMPREF1078_RS10215 at 670.458 kb on - strand, within HMPREF1078_RS10215 at 670.465 kb on + strand, within HMPREF1078_RS10215 at 670.465 kb on + strand, within HMPREF1078_RS10215 at 670.483 kb on - strand, within HMPREF1078_RS10215 at 670.493 kb on + strand, within HMPREF1078_RS10215 at 670.493 kb on + strand, within HMPREF1078_RS10215 at 670.513 kb on + strand, within HMPREF1078_RS10215 at 670.522 kb on - strand, within HMPREF1078_RS10215 at 670.640 kb on - strand, within HMPREF1078_RS10215 at 670.853 kb on + strand, within HMPREF1078_RS10215 at 670.860 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.870 kb on - strand, within HMPREF1078_RS10215 at 670.875 kb on + strand, within HMPREF1078_RS10215 at 670.876 kb on - strand, within HMPREF1078_RS10215 at 670.879 kb on - strand, within HMPREF1078_RS10215 at 670.945 kb on - strand, within HMPREF1078_RS10215 at 670.950 kb on + strand, within HMPREF1078_RS10215 at 670.950 kb on + strand, within HMPREF1078_RS10215 at 670.951 kb on - strand, within HMPREF1078_RS10215 at 670.952 kb on + strand, within HMPREF1078_RS10215 at 670.952 kb on + strand, within HMPREF1078_RS10215 at 670.953 kb on - strand, within HMPREF1078_RS10215 at 670.953 kb on - strand, within HMPREF1078_RS10215 at 671.009 kb on + strand, within HMPREF1078_RS10215 at 671.065 kb on + strand, within HMPREF1078_RS10215 at 671.065 kb on + strand, within HMPREF1078_RS10215 at 671.066 kb on - strand, within HMPREF1078_RS10215 at 671.066 kb on - strand, within HMPREF1078_RS10215 at 671.093 kb on + strand, within HMPREF1078_RS10215 at 671.140 kb on + strand, within HMPREF1078_RS10215 at 671.198 kb on + strand at 671.199 kb on - strand at 671.246 kb on - strand at 671.271 kb on + strand at 671.272 kb on - strand at 671.345 kb on - strand at 671.355 kb on + strand at 671.356 kb on - strand at 671.356 kb on - strand at 671.366 kb on + strand, within HMPREF1078_RS10220 at 671.367 kb on - strand, within HMPREF1078_RS10220 at 671.367 kb on - strand, within HMPREF1078_RS10220 at 671.406 kb on + strand, within HMPREF1078_RS10220 at 671.411 kb on - strand, within HMPREF1078_RS10220 at 671.533 kb on - strand, within HMPREF1078_RS10220 at 671.533 kb on - strand, within HMPREF1078_RS10220 at 671.566 kb on - strand, within HMPREF1078_RS10220 at 671.582 kb on - strand, within HMPREF1078_RS10220 at 671.726 kb on - strand, within HMPREF1078_RS10220 at 671.795 kb on + strand, within HMPREF1078_RS10220 at 671.795 kb on + strand, within HMPREF1078_RS10220 at 671.795 kb on + strand, within HMPREF1078_RS10220 at 671.795 kb on + strand, within HMPREF1078_RS10220 at 671.795 kb on + strand, within HMPREF1078_RS10220 at 671.796 kb on - strand, within HMPREF1078_RS10220 at 671.797 kb on + strand, within HMPREF1078_RS10220 at 671.797 kb on + strand, within HMPREF1078_RS10220 at 671.845 kb on - strand, within HMPREF1078_RS10220 at 671.868 kb on - strand, within HMPREF1078_RS10220 at 672.091 kb on - strand, within HMPREF1078_RS10220 at 672.091 kb on - strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.120 kb on + strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.121 kb on - strand, within HMPREF1078_RS10220 at 672.124 kb on + strand, within HMPREF1078_RS10220 at 672.124 kb on + strand, within HMPREF1078_RS10220 at 672.125 kb on - strand, within HMPREF1078_RS10220 at 672.125 kb on - strand, within HMPREF1078_RS10220 at 672.125 kb on - strand, within HMPREF1078_RS10220 at 672.166 kb on - strand at 672.183 kb on + strand at 672.220 kb on + strand at 672.221 kb on - strand at 672.223 kb on + strand at 672.223 kb on + strand at 672.224 kb on - strand at 672.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 669,229 + HMPREF1078_RS10210 0.32 +1.5 669,230 - HMPREF1078_RS10210 0.32 -1.2 669,230 - HMPREF1078_RS10210 0.32 -0.8 669,237 + HMPREF1078_RS10210 0.33 +1.1 669,238 - HMPREF1078_RS10210 0.33 -1.5 669,239 + HMPREF1078_RS10210 0.33 -0.3 669,240 - HMPREF1078_RS10210 0.33 -0.7 669,290 + HMPREF1078_RS10210 0.37 -1.1 669,291 - HMPREF1078_RS10210 0.37 +1.9 669,291 - HMPREF1078_RS10210 0.37 +0.3 669,313 - HMPREF1078_RS10210 0.39 -1.8 669,319 + HMPREF1078_RS10210 0.40 -0.2 669,319 + HMPREF1078_RS10210 0.40 -0.5 669,320 - HMPREF1078_RS10210 0.40 -1.4 669,324 + HMPREF1078_RS10210 0.40 +0.0 669,431 - HMPREF1078_RS10210 0.49 -1.5 669,522 + HMPREF1078_RS10210 0.56 -1.4 669,522 + HMPREF1078_RS10210 0.56 +1.2 669,523 - HMPREF1078_RS10210 0.56 -0.6 669,564 - HMPREF1078_RS10210 0.60 -0.5 669,612 + HMPREF1078_RS10210 0.64 +0.5 669,667 - HMPREF1078_RS10210 0.68 +1.1 669,669 + HMPREF1078_RS10210 0.68 -0.8 669,670 - HMPREF1078_RS10210 0.68 -0.7 669,670 - HMPREF1078_RS10210 0.68 +0.7 669,693 + HMPREF1078_RS10210 0.70 -0.1 669,693 + HMPREF1078_RS10210 0.70 +0.2 669,694 - HMPREF1078_RS10210 0.70 -0.5 669,694 - HMPREF1078_RS10210 0.70 -1.6 669,694 - HMPREF1078_RS10210 0.70 +0.7 669,694 - HMPREF1078_RS10210 0.70 +0.3 669,788 - HMPREF1078_RS10210 0.78 +0.3 669,914 - HMPREF1078_RS10210 0.88 +0.2 669,914 - HMPREF1078_RS10210 0.88 +0.9 669,933 + +1.1 669,934 - +1.1 669,937 + +0.1 669,937 + -1.9 669,938 - -0.3 669,939 + -1.1 669,939 + -0.1 669,939 + -1.2 669,945 + -0.0 669,996 + +0.4 669,996 + +0.4 669,997 - -0.7 670,029 - -1.4 670,029 - -0.3 670,037 + +0.1 670,038 - -1.8 670,038 - +1.5 670,041 - +0.4 670,048 + +0.6 670,055 - +0.3 670,055 - -1.0 670,164 + +0.7 670,165 - -0.1 670,215 + HMPREF1078_RS10215 0.13 -1.6 670,216 - HMPREF1078_RS10215 0.13 +0.4 670,218 - HMPREF1078_RS10215 0.13 -1.3 670,218 - HMPREF1078_RS10215 0.13 +0.3 670,248 + HMPREF1078_RS10215 0.15 -0.5 670,249 - HMPREF1078_RS10215 0.15 +0.1 670,257 + HMPREF1078_RS10215 0.16 -0.4 670,258 - HMPREF1078_RS10215 0.16 +0.2 670,258 - HMPREF1078_RS10215 0.16 -0.3 670,345 + HMPREF1078_RS10215 0.23 +0.4 670,345 + HMPREF1078_RS10215 0.23 -0.6 670,346 - HMPREF1078_RS10215 0.23 -0.3 670,352 - HMPREF1078_RS10215 0.24 -1.2 670,354 + HMPREF1078_RS10215 0.24 -0.3 670,458 - HMPREF1078_RS10215 0.33 +0.4 670,465 + HMPREF1078_RS10215 0.33 -1.4 670,465 + HMPREF1078_RS10215 0.33 -0.0 670,483 - HMPREF1078_RS10215 0.35 +0.5 670,493 + HMPREF1078_RS10215 0.36 -0.6 670,493 + HMPREF1078_RS10215 0.36 -0.1 670,513 + HMPREF1078_RS10215 0.37 -1.0 670,522 - HMPREF1078_RS10215 0.38 -0.8 670,640 - HMPREF1078_RS10215 0.48 -0.8 670,853 + HMPREF1078_RS10215 0.66 +1.1 670,860 - HMPREF1078_RS10215 0.66 -1.7 670,870 - HMPREF1078_RS10215 0.67 +0.6 670,870 - HMPREF1078_RS10215 0.67 -0.5 670,870 - HMPREF1078_RS10215 0.67 +0.2 670,875 + HMPREF1078_RS10215 0.68 +0.2 670,876 - HMPREF1078_RS10215 0.68 +0.2 670,879 - HMPREF1078_RS10215 0.68 -0.6 670,945 - HMPREF1078_RS10215 0.73 +0.2 670,950 + HMPREF1078_RS10215 0.74 +1.3 670,950 + HMPREF1078_RS10215 0.74 +0.0 670,951 - HMPREF1078_RS10215 0.74 -1.2 670,952 + HMPREF1078_RS10215 0.74 -0.3 670,952 + HMPREF1078_RS10215 0.74 -0.1 670,953 - HMPREF1078_RS10215 0.74 -0.3 670,953 - HMPREF1078_RS10215 0.74 -0.2 671,009 + HMPREF1078_RS10215 0.79 -0.5 671,065 + HMPREF1078_RS10215 0.83 +0.5 671,065 + HMPREF1078_RS10215 0.83 -2.9 671,066 - HMPREF1078_RS10215 0.83 +0.4 671,066 - HMPREF1078_RS10215 0.83 -0.2 671,093 + HMPREF1078_RS10215 0.86 -1.1 671,140 + HMPREF1078_RS10215 0.90 +0.2 671,198 + -0.4 671,199 - -1.7 671,246 - -0.2 671,271 + -0.3 671,272 - +2.4 671,345 - +0.9 671,355 + +0.7 671,356 - +0.9 671,356 - +1.0 671,366 + HMPREF1078_RS10220 0.10 -1.8 671,367 - HMPREF1078_RS10220 0.10 -1.6 671,367 - HMPREF1078_RS10220 0.10 +0.2 671,406 + HMPREF1078_RS10220 0.14 -0.3 671,411 - HMPREF1078_RS10220 0.15 -0.6 671,533 - HMPREF1078_RS10220 0.27 +0.9 671,533 - HMPREF1078_RS10220 0.27 +0.2 671,566 - HMPREF1078_RS10220 0.30 +0.9 671,582 - HMPREF1078_RS10220 0.32 -0.6 671,726 - HMPREF1078_RS10220 0.46 -0.5 671,795 + HMPREF1078_RS10220 0.53 +2.2 671,795 + HMPREF1078_RS10220 0.53 -1.6 671,795 + HMPREF1078_RS10220 0.53 +0.7 671,795 + HMPREF1078_RS10220 0.53 +0.7 671,795 + HMPREF1078_RS10220 0.53 -1.1 671,796 - HMPREF1078_RS10220 0.53 -2.1 671,797 + HMPREF1078_RS10220 0.53 +0.7 671,797 + HMPREF1078_RS10220 0.53 -0.8 671,845 - HMPREF1078_RS10220 0.58 +0.7 671,868 - HMPREF1078_RS10220 0.60 +0.9 672,091 - HMPREF1078_RS10220 0.83 -1.8 672,091 - HMPREF1078_RS10220 0.83 +0.2 672,120 + HMPREF1078_RS10220 0.86 -1.3 672,120 + HMPREF1078_RS10220 0.86 +0.9 672,120 + HMPREF1078_RS10220 0.86 +0.5 672,120 + HMPREF1078_RS10220 0.86 +0.0 672,120 + HMPREF1078_RS10220 0.86 -1.8 672,120 + HMPREF1078_RS10220 0.86 +0.3 672,121 - HMPREF1078_RS10220 0.86 +0.2 672,121 - HMPREF1078_RS10220 0.86 -0.3 672,121 - HMPREF1078_RS10220 0.86 +1.8 672,121 - HMPREF1078_RS10220 0.86 -1.8 672,121 - HMPREF1078_RS10220 0.86 +0.4 672,121 - HMPREF1078_RS10220 0.86 -0.0 672,121 - HMPREF1078_RS10220 0.86 -1.1 672,124 + HMPREF1078_RS10220 0.86 -1.7 672,124 + HMPREF1078_RS10220 0.86 +1.5 672,125 - HMPREF1078_RS10220 0.86 -0.4 672,125 - HMPREF1078_RS10220 0.86 -0.2 672,125 - HMPREF1078_RS10220 0.86 +0.8 672,166 - +0.9 672,183 + +1.4 672,220 + -0.7 672,221 - +0.1 672,223 + +0.2 672,223 + -0.8 672,224 - -0.2 672,224 - -0.6
Or see this region's nucleotide sequence