Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10155 and HMPREF1078_RS10160 are separated by 212 nucleotides HMPREF1078_RS10160 and HMPREF1078_RS10165 are separated by 56 nucleotides
HMPREF1078_RS10155: HMPREF1078_RS10155 - DUF5106 domain-containing protein, at 656,151 to 657,071
_RS10155
HMPREF1078_RS10160: HMPREF1078_RS10160 - OmpA family protein, at 657,284 to 659,272
_RS10160
HMPREF1078_RS10165: HMPREF1078_RS10165 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 659,329 to 660,549
_RS10165
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.318 kb on - strand, within HMPREF1078_RS10155 at 656.318 kb on - strand, within HMPREF1078_RS10155 at 656.385 kb on - strand, within HMPREF1078_RS10155 at 656.385 kb on - strand, within HMPREF1078_RS10155 at 656.464 kb on + strand, within HMPREF1078_RS10155 at 656.495 kb on + strand, within HMPREF1078_RS10155 at 656.496 kb on - strand, within HMPREF1078_RS10155 at 656.502 kb on - strand, within HMPREF1078_RS10155 at 656.534 kb on - strand, within HMPREF1078_RS10155 at 656.534 kb on - strand, within HMPREF1078_RS10155 at 656.546 kb on + strand, within HMPREF1078_RS10155 at 656.602 kb on - strand, within HMPREF1078_RS10155 at 656.638 kb on - strand, within HMPREF1078_RS10155 at 656.649 kb on + strand, within HMPREF1078_RS10155 at 656.649 kb on + strand, within HMPREF1078_RS10155 at 656.650 kb on - strand, within HMPREF1078_RS10155 at 656.653 kb on + strand, within HMPREF1078_RS10155 at 656.654 kb on - strand, within HMPREF1078_RS10155 at 656.654 kb on - strand, within HMPREF1078_RS10155 at 656.657 kb on + strand, within HMPREF1078_RS10155 at 656.696 kb on - strand, within HMPREF1078_RS10155 at 656.701 kb on + strand, within HMPREF1078_RS10155 at 656.756 kb on + strand, within HMPREF1078_RS10155 at 656.775 kb on - strand, within HMPREF1078_RS10155 at 656.803 kb on + strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.814 kb on - strand, within HMPREF1078_RS10155 at 656.821 kb on + strand, within HMPREF1078_RS10155 at 656.871 kb on - strand, within HMPREF1078_RS10155 at 656.904 kb on + strand, within HMPREF1078_RS10155 at 656.911 kb on + strand, within HMPREF1078_RS10155 at 657.036 kb on + strand at 657.037 kb on - strand at 657.052 kb on + strand at 657.053 kb on - strand at 657.057 kb on + strand at 657.071 kb on + strand at 657.074 kb on + strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.100 kb on - strand at 657.137 kb on - strand at 657.141 kb on - strand at 657.141 kb on - strand at 657.149 kb on + strand at 657.221 kb on - strand at 657.228 kb on + strand at 657.235 kb on + strand at 657.236 kb on - strand at 657.254 kb on + strand at 657.255 kb on - strand at 657.281 kb on - strand at 657.297 kb on + strand at 657.336 kb on - strand at 657.336 kb on - strand at 657.420 kb on + strand at 657.439 kb on + strand at 657.517 kb on - strand, within HMPREF1078_RS10160 at 657.586 kb on + strand, within HMPREF1078_RS10160 at 657.596 kb on + strand, within HMPREF1078_RS10160 at 657.721 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.753 kb on + strand, within HMPREF1078_RS10160 at 657.753 kb on + strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.807 kb on + strand, within HMPREF1078_RS10160 at 657.808 kb on - strand, within HMPREF1078_RS10160 at 657.834 kb on + strand, within HMPREF1078_RS10160 at 657.835 kb on - strand, within HMPREF1078_RS10160 at 657.864 kb on + strand, within HMPREF1078_RS10160 at 657.869 kb on - strand, within HMPREF1078_RS10160 at 657.967 kb on + strand, within HMPREF1078_RS10160 at 658.020 kb on + strand, within HMPREF1078_RS10160 at 658.021 kb on - strand, within HMPREF1078_RS10160 at 658.021 kb on - strand, within HMPREF1078_RS10160 at 658.022 kb on + strand, within HMPREF1078_RS10160 at 658.221 kb on - strand, within HMPREF1078_RS10160 at 658.236 kb on + strand, within HMPREF1078_RS10160 at 658.262 kb on - strand, within HMPREF1078_RS10160 at 658.262 kb on - strand, within HMPREF1078_RS10160 at 658.350 kb on - strand, within HMPREF1078_RS10160 at 658.350 kb on - strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.375 kb on - strand, within HMPREF1078_RS10160 at 658.395 kb on + strand, within HMPREF1078_RS10160 at 658.479 kb on - strand, within HMPREF1078_RS10160 at 658.482 kb on + strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.524 kb on + strand, within HMPREF1078_RS10160 at 658.525 kb on - strand, within HMPREF1078_RS10160 at 658.530 kb on + strand, within HMPREF1078_RS10160 at 658.531 kb on - strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.534 kb on - strand, within HMPREF1078_RS10160 at 658.534 kb on - strand, within HMPREF1078_RS10160 at 658.652 kb on + strand, within HMPREF1078_RS10160 at 658.652 kb on + strand, within HMPREF1078_RS10160 at 658.664 kb on - strand, within HMPREF1078_RS10160 at 658.764 kb on + strand, within HMPREF1078_RS10160 at 658.798 kb on + strand, within HMPREF1078_RS10160 at 658.822 kb on + strand, within HMPREF1078_RS10160 at 658.823 kb on - strand, within HMPREF1078_RS10160 at 658.914 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.927 kb on - strand, within HMPREF1078_RS10160 at 658.963 kb on - strand, within HMPREF1078_RS10160 at 659.005 kb on + strand, within HMPREF1078_RS10160 at 659.006 kb on - strand, within HMPREF1078_RS10160 at 659.006 kb on - strand, within HMPREF1078_RS10160 at 659.023 kb on + strand, within HMPREF1078_RS10160 at 659.024 kb on - strand, within HMPREF1078_RS10160 at 659.026 kb on - strand, within HMPREF1078_RS10160 at 659.026 kb on - strand, within HMPREF1078_RS10160 at 659.090 kb on - strand at 659.092 kb on - strand at 659.092 kb on - strand at 659.132 kb on + strand at 659.142 kb on + strand at 659.253 kb on + strand at 659.254 kb on - strand at 659.279 kb on + strand at 659.285 kb on - strand at 659.294 kb on - strand at 659.305 kb on + strand at 659.305 kb on + strand at 659.305 kb on + strand at 659.306 kb on - strand at 659.310 kb on - strand at 659.313 kb on - strand at 659.316 kb on + strand at 659.316 kb on + strand at 659.321 kb on + strand at 659.322 kb on - strand at 659.322 kb on - strand at 659.330 kb on + strand at 659.331 kb on - strand at 659.393 kb on + strand at 659.393 kb on + strand at 659.393 kb on + strand at 659.394 kb on - strand at 659.483 kb on - strand, within HMPREF1078_RS10165 at 659.688 kb on + strand, within HMPREF1078_RS10165 at 659.689 kb on - strand, within HMPREF1078_RS10165 at 659.689 kb on - strand, within HMPREF1078_RS10165 at 659.690 kb on + strand, within HMPREF1078_RS10165 at 659.690 kb on + strand, within HMPREF1078_RS10165 at 659.691 kb on - strand, within HMPREF1078_RS10165 at 659.691 kb on - strand, within HMPREF1078_RS10165 at 659.742 kb on + strand, within HMPREF1078_RS10165 at 659.923 kb on - strand, within HMPREF1078_RS10165 at 659.923 kb on - strand, within HMPREF1078_RS10165 at 659.985 kb on - strand, within HMPREF1078_RS10165 at 660.024 kb on - strand, within HMPREF1078_RS10165 at 660.072 kb on + strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.148 kb on - strand, within HMPREF1078_RS10165 at 660.263 kb on + strand, within HMPREF1078_RS10165
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 656,315 + HMPREF1078_RS10155 0.18 -2.3 656,315 + HMPREF1078_RS10155 0.18 +1.6 656,315 + HMPREF1078_RS10155 0.18 +0.2 656,315 + HMPREF1078_RS10155 0.18 -0.4 656,317 + HMPREF1078_RS10155 0.18 +0.2 656,317 + HMPREF1078_RS10155 0.18 +1.9 656,317 + HMPREF1078_RS10155 0.18 -1.0 656,318 - HMPREF1078_RS10155 0.18 +1.1 656,318 - HMPREF1078_RS10155 0.18 +0.3 656,385 - HMPREF1078_RS10155 0.25 +0.3 656,385 - HMPREF1078_RS10155 0.25 +0.2 656,464 + HMPREF1078_RS10155 0.34 +0.3 656,495 + HMPREF1078_RS10155 0.37 -0.1 656,496 - HMPREF1078_RS10155 0.37 -0.8 656,502 - HMPREF1078_RS10155 0.38 +1.0 656,534 - HMPREF1078_RS10155 0.42 +0.2 656,534 - HMPREF1078_RS10155 0.42 +1.0 656,546 + HMPREF1078_RS10155 0.43 -1.0 656,602 - HMPREF1078_RS10155 0.49 -0.9 656,638 - HMPREF1078_RS10155 0.53 -0.2 656,649 + HMPREF1078_RS10155 0.54 -1.4 656,649 + HMPREF1078_RS10155 0.54 -0.6 656,650 - HMPREF1078_RS10155 0.54 +0.2 656,653 + HMPREF1078_RS10155 0.55 -1.0 656,654 - HMPREF1078_RS10155 0.55 -0.5 656,654 - HMPREF1078_RS10155 0.55 +0.1 656,657 + HMPREF1078_RS10155 0.55 +1.6 656,696 - HMPREF1078_RS10155 0.59 -0.3 656,701 + HMPREF1078_RS10155 0.60 -0.9 656,756 + HMPREF1078_RS10155 0.66 -0.6 656,775 - HMPREF1078_RS10155 0.68 -0.5 656,803 + HMPREF1078_RS10155 0.71 +0.1 656,804 - HMPREF1078_RS10155 0.71 -0.1 656,804 - HMPREF1078_RS10155 0.71 -0.5 656,804 - HMPREF1078_RS10155 0.71 -0.5 656,804 - HMPREF1078_RS10155 0.71 +0.3 656,804 - HMPREF1078_RS10155 0.71 -0.5 656,804 - HMPREF1078_RS10155 0.71 +1.1 656,814 - HMPREF1078_RS10155 0.72 -0.1 656,821 + HMPREF1078_RS10155 0.73 +0.0 656,871 - HMPREF1078_RS10155 0.78 -0.0 656,904 + HMPREF1078_RS10155 0.82 +0.6 656,911 + HMPREF1078_RS10155 0.83 -0.5 657,036 + -1.0 657,037 - +0.3 657,052 + -1.0 657,053 - -1.0 657,057 + -1.8 657,071 + +0.4 657,074 + -0.8 657,075 - -0.1 657,075 - -1.5 657,075 - +1.1 657,075 - -0.2 657,100 - +0.1 657,137 - -0.1 657,141 - +0.3 657,141 - +0.1 657,149 + +0.7 657,221 - +1.0 657,228 + +0.1 657,235 + +0.6 657,236 - -0.8 657,254 + -2.3 657,255 - -0.3 657,281 - -1.1 657,297 + -0.3 657,336 - +0.5 657,336 - -0.5 657,420 + -0.3 657,439 + +0.5 657,517 - HMPREF1078_RS10160 0.12 +2.5 657,586 + HMPREF1078_RS10160 0.15 +1.5 657,596 + HMPREF1078_RS10160 0.16 -0.7 657,721 + HMPREF1078_RS10160 0.22 +3.1 657,751 + HMPREF1078_RS10160 0.23 -0.5 657,751 + HMPREF1078_RS10160 0.23 -0.1 657,751 + HMPREF1078_RS10160 0.23 +0.9 657,752 - HMPREF1078_RS10160 0.24 -0.1 657,752 - HMPREF1078_RS10160 0.24 +1.5 657,752 - HMPREF1078_RS10160 0.24 -0.5 657,752 - HMPREF1078_RS10160 0.24 +0.5 657,753 + HMPREF1078_RS10160 0.24 +2.5 657,753 + HMPREF1078_RS10160 0.24 +0.1 657,754 - HMPREF1078_RS10160 0.24 +1.5 657,754 - HMPREF1078_RS10160 0.24 -0.3 657,754 - HMPREF1078_RS10160 0.24 +0.9 657,754 - HMPREF1078_RS10160 0.24 +1.5 657,754 - HMPREF1078_RS10160 0.24 +0.7 657,754 - HMPREF1078_RS10160 0.24 +1.9 657,754 - HMPREF1078_RS10160 0.24 -0.3 657,807 + HMPREF1078_RS10160 0.26 -0.1 657,808 - HMPREF1078_RS10160 0.26 +1.5 657,834 + HMPREF1078_RS10160 0.28 -0.5 657,835 - HMPREF1078_RS10160 0.28 -1.5 657,864 + HMPREF1078_RS10160 0.29 -0.1 657,869 - HMPREF1078_RS10160 0.29 -1.1 657,967 + HMPREF1078_RS10160 0.34 +0.5 658,020 + HMPREF1078_RS10160 0.37 +0.1 658,021 - HMPREF1078_RS10160 0.37 -0.6 658,021 - HMPREF1078_RS10160 0.37 -0.1 658,022 + HMPREF1078_RS10160 0.37 +0.1 658,221 - HMPREF1078_RS10160 0.47 +1.1 658,236 + HMPREF1078_RS10160 0.48 -1.1 658,262 - HMPREF1078_RS10160 0.49 -0.7 658,262 - HMPREF1078_RS10160 0.49 -1.1 658,350 - HMPREF1078_RS10160 0.54 -0.2 658,350 - HMPREF1078_RS10160 0.54 -0.5 658,374 + HMPREF1078_RS10160 0.55 +0.9 658,374 + HMPREF1078_RS10160 0.55 -1.3 658,374 + HMPREF1078_RS10160 0.55 +0.1 658,374 + HMPREF1078_RS10160 0.55 +2.1 658,375 - HMPREF1078_RS10160 0.55 +2.5 658,395 + HMPREF1078_RS10160 0.56 +0.5 658,479 - HMPREF1078_RS10160 0.60 -0.1 658,482 + HMPREF1078_RS10160 0.60 -0.3 658,483 - HMPREF1078_RS10160 0.60 +1.3 658,483 - HMPREF1078_RS10160 0.60 +1.7 658,483 - HMPREF1078_RS10160 0.60 -0.1 658,483 - HMPREF1078_RS10160 0.60 +2.5 658,524 + HMPREF1078_RS10160 0.62 -0.7 658,525 - HMPREF1078_RS10160 0.62 +0.9 658,530 + HMPREF1078_RS10160 0.63 +1.5 658,531 - HMPREF1078_RS10160 0.63 -1.2 658,533 + HMPREF1078_RS10160 0.63 -0.5 658,533 + HMPREF1078_RS10160 0.63 -0.9 658,533 + HMPREF1078_RS10160 0.63 +0.1 658,534 - HMPREF1078_RS10160 0.63 -0.7 658,534 - HMPREF1078_RS10160 0.63 +0.9 658,652 + HMPREF1078_RS10160 0.69 -0.7 658,652 + HMPREF1078_RS10160 0.69 +0.9 658,664 - HMPREF1078_RS10160 0.69 +0.1 658,764 + HMPREF1078_RS10160 0.74 +2.5 658,798 + HMPREF1078_RS10160 0.76 +1.5 658,822 + HMPREF1078_RS10160 0.77 -0.2 658,823 - HMPREF1078_RS10160 0.77 -0.5 658,914 + HMPREF1078_RS10160 0.82 +0.9 658,923 + HMPREF1078_RS10160 0.82 +0.1 658,923 + HMPREF1078_RS10160 0.82 +0.5 658,923 + HMPREF1078_RS10160 0.82 -0.3 658,927 - HMPREF1078_RS10160 0.83 -1.1 658,963 - HMPREF1078_RS10160 0.84 +0.5 659,005 + HMPREF1078_RS10160 0.87 +1.5 659,006 - HMPREF1078_RS10160 0.87 +0.9 659,006 - HMPREF1078_RS10160 0.87 -1.1 659,023 + HMPREF1078_RS10160 0.87 +0.8 659,024 - HMPREF1078_RS10160 0.87 -0.6 659,026 - HMPREF1078_RS10160 0.88 +0.9 659,026 - HMPREF1078_RS10160 0.88 +1.0 659,090 - +0.5 659,092 - -0.3 659,092 - -0.5 659,132 + +0.5 659,142 + +2.5 659,253 + +1.2 659,254 - +1.5 659,279 + +1.1 659,285 - -1.3 659,294 - +0.6 659,305 + -1.2 659,305 + +1.5 659,305 + +0.5 659,306 - -0.3 659,310 - +0.5 659,313 - -1.2 659,316 + -0.5 659,316 + +0.9 659,321 + +1.1 659,322 - +0.7 659,322 - -0.2 659,330 + -0.0 659,331 - +0.5 659,393 + -0.9 659,393 + +0.3 659,393 + +0.2 659,394 - -0.7 659,483 - HMPREF1078_RS10165 0.13 +1.3 659,688 + HMPREF1078_RS10165 0.29 -0.7 659,689 - HMPREF1078_RS10165 0.29 +0.4 659,689 - HMPREF1078_RS10165 0.29 -2.0 659,690 + HMPREF1078_RS10165 0.30 -0.7 659,690 + HMPREF1078_RS10165 0.30 -0.3 659,691 - HMPREF1078_RS10165 0.30 -0.9 659,691 - HMPREF1078_RS10165 0.30 -0.4 659,742 + HMPREF1078_RS10165 0.34 -1.8 659,923 - HMPREF1078_RS10165 0.49 +0.1 659,923 - HMPREF1078_RS10165 0.49 +1.7 659,985 - HMPREF1078_RS10165 0.54 +0.6 660,024 - HMPREF1078_RS10165 0.57 -0.3 660,072 + HMPREF1078_RS10165 0.61 -0.3 660,073 - HMPREF1078_RS10165 0.61 -0.6 660,073 - HMPREF1078_RS10165 0.61 +0.5 660,073 - HMPREF1078_RS10165 0.61 +1.3 660,107 + HMPREF1078_RS10165 0.64 -0.2 660,107 + HMPREF1078_RS10165 0.64 -1.0 660,107 + HMPREF1078_RS10165 0.64 +3.1 660,148 - HMPREF1078_RS10165 0.67 +0.6 660,263 + HMPREF1078_RS10165 0.76 -0.1
Or see this region's nucleotide sequence