Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09940 and HMPREF1078_RS09945 are separated by 74 nucleotides HMPREF1078_RS09945 and HMPREF1078_RS09950 are separated by 128 nucleotides HMPREF1078_RS09950 and HMPREF1078_RS09955 are separated by 189 nucleotides
HMPREF1078_RS09940: HMPREF1078_RS09940 - class I SAM-dependent methyltransferase, at 603,791 to 604,975
_RS09940
HMPREF1078_RS09945: HMPREF1078_RS09945 - tRNA-Ser, at 605,050 to 605,136
_RS09945
HMPREF1078_RS09950: HMPREF1078_RS09950 - NADH peroxidase, at 605,265 to 605,816
_RS09950
HMPREF1078_RS09955: HMPREF1078_RS09955 - class I fructose-bisphosphate aldolase, at 606,006 to 607,064
_RS09955
Position (kb) 605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.137 kb on + strand, within HMPREF1078_RS09940 at 604.143 kb on + strand, within HMPREF1078_RS09940 at 604.143 kb on + strand, within HMPREF1078_RS09940 at 604.144 kb on - strand, within HMPREF1078_RS09940 at 604.144 kb on - strand, within HMPREF1078_RS09940 at 604.144 kb on - strand, within HMPREF1078_RS09940 at 604.147 kb on + strand, within HMPREF1078_RS09940 at 604.147 kb on + strand, within HMPREF1078_RS09940 at 604.152 kb on - strand, within HMPREF1078_RS09940 at 604.194 kb on - strand, within HMPREF1078_RS09940 at 604.365 kb on - strand, within HMPREF1078_RS09940 at 604.367 kb on - strand, within HMPREF1078_RS09940 at 604.367 kb on - strand, within HMPREF1078_RS09940 at 604.478 kb on - strand, within HMPREF1078_RS09940 at 604.505 kb on - strand, within HMPREF1078_RS09940 at 604.506 kb on + strand, within HMPREF1078_RS09940 at 604.506 kb on + strand, within HMPREF1078_RS09940 at 604.507 kb on - strand, within HMPREF1078_RS09940 at 604.560 kb on - strand, within HMPREF1078_RS09940 at 604.569 kb on - strand, within HMPREF1078_RS09940 at 604.571 kb on - strand, within HMPREF1078_RS09940 at 604.571 kb on - strand, within HMPREF1078_RS09940 at 604.617 kb on + strand, within HMPREF1078_RS09940 at 604.634 kb on + strand, within HMPREF1078_RS09940 at 604.635 kb on - strand, within HMPREF1078_RS09940 at 604.635 kb on - strand, within HMPREF1078_RS09940 at 604.636 kb on + strand, within HMPREF1078_RS09940 at 604.636 kb on + strand, within HMPREF1078_RS09940 at 604.636 kb on + strand, within HMPREF1078_RS09940 at 604.636 kb on + strand, within HMPREF1078_RS09940 at 604.636 kb on + strand, within HMPREF1078_RS09940 at 604.638 kb on + strand, within HMPREF1078_RS09940 at 604.638 kb on + strand, within HMPREF1078_RS09940 at 604.639 kb on - strand, within HMPREF1078_RS09940 at 604.639 kb on - strand, within HMPREF1078_RS09940 at 604.639 kb on - strand, within HMPREF1078_RS09940 at 604.671 kb on + strand, within HMPREF1078_RS09940 at 604.672 kb on - strand, within HMPREF1078_RS09940 at 604.672 kb on - strand, within HMPREF1078_RS09940 at 604.676 kb on - strand, within HMPREF1078_RS09940 at 604.738 kb on + strand, within HMPREF1078_RS09940 at 604.740 kb on + strand, within HMPREF1078_RS09940 at 604.741 kb on - strand, within HMPREF1078_RS09940 at 604.877 kb on - strand at 604.953 kb on - strand at 604.953 kb on - strand at 605.000 kb on + strand at 605.000 kb on + strand at 605.024 kb on - strand at 605.078 kb on - strand, within HMPREF1078_RS09945 at 605.090 kb on - strand, within HMPREF1078_RS09945 at 605.090 kb on - strand, within HMPREF1078_RS09945 at 605.138 kb on + strand at 605.164 kb on + strand at 605.266 kb on + strand at 605.284 kb on + strand at 605.284 kb on + strand at 605.325 kb on - strand, within HMPREF1078_RS09950 at 605.325 kb on - strand, within HMPREF1078_RS09950 at 605.325 kb on - strand, within HMPREF1078_RS09950 at 605.352 kb on - strand, within HMPREF1078_RS09950 at 605.387 kb on + strand, within HMPREF1078_RS09950 at 605.426 kb on + strand, within HMPREF1078_RS09950 at 605.426 kb on + strand, within HMPREF1078_RS09950 at 605.486 kb on + strand, within HMPREF1078_RS09950 at 605.487 kb on - strand, within HMPREF1078_RS09950 at 605.515 kb on + strand, within HMPREF1078_RS09950 at 605.515 kb on + strand, within HMPREF1078_RS09950 at 605.516 kb on - strand, within HMPREF1078_RS09950 at 605.573 kb on + strand, within HMPREF1078_RS09950 at 605.587 kb on - strand, within HMPREF1078_RS09950 at 605.598 kb on - strand, within HMPREF1078_RS09950 at 605.630 kb on + strand, within HMPREF1078_RS09950 at 605.631 kb on - strand, within HMPREF1078_RS09950 at 605.654 kb on + strand, within HMPREF1078_RS09950 at 605.700 kb on - strand, within HMPREF1078_RS09950 at 605.700 kb on - strand, within HMPREF1078_RS09950 at 605.706 kb on + strand, within HMPREF1078_RS09950 at 605.779 kb on - strand at 605.779 kb on - strand at 605.779 kb on - strand at 605.790 kb on + strand at 605.839 kb on + strand at 605.839 kb on + strand at 605.839 kb on + strand at 605.840 kb on - strand at 605.846 kb on + strand at 605.847 kb on - strand at 605.857 kb on + strand at 605.858 kb on - strand at 605.858 kb on - strand at 605.858 kb on - strand at 605.983 kb on + strand at 605.983 kb on + strand at 605.984 kb on - strand at 605.984 kb on - strand at 606.001 kb on + strand at 606.002 kb on - strand at 606.005 kb on + strand at 606.023 kb on + strand at 606.071 kb on + strand at 606.084 kb on - strand at 606.084 kb on - strand at 606.092 kb on + strand at 606.092 kb on + strand at 606.092 kb on + strand at 606.093 kb on - strand at 606.093 kb on - strand at 606.093 kb on - strand at 606.094 kb on + strand at 606.095 kb on - strand at 606.125 kb on + strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.126 kb on - strand, within HMPREF1078_RS09955 at 606.127 kb on + strand, within HMPREF1078_RS09955 at 606.127 kb on + strand, within HMPREF1078_RS09955 at 606.128 kb on - strand, within HMPREF1078_RS09955
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 604,137 + HMPREF1078_RS09940 0.29 +0.5 604,143 + HMPREF1078_RS09940 0.30 -0.9 604,143 + HMPREF1078_RS09940 0.30 +0.6 604,144 - HMPREF1078_RS09940 0.30 +0.6 604,144 - HMPREF1078_RS09940 0.30 +0.2 604,144 - HMPREF1078_RS09940 0.30 +1.4 604,147 + HMPREF1078_RS09940 0.30 -1.9 604,147 + HMPREF1078_RS09940 0.30 -1.9 604,152 - HMPREF1078_RS09940 0.30 +0.1 604,194 - HMPREF1078_RS09940 0.34 -1.2 604,365 - HMPREF1078_RS09940 0.48 +0.7 604,367 - HMPREF1078_RS09940 0.49 -0.2 604,367 - HMPREF1078_RS09940 0.49 -1.1 604,478 - HMPREF1078_RS09940 0.58 -0.2 604,505 - HMPREF1078_RS09940 0.60 +1.7 604,506 + HMPREF1078_RS09940 0.60 +0.6 604,506 + HMPREF1078_RS09940 0.60 -2.3 604,507 - HMPREF1078_RS09940 0.60 -0.1 604,560 - HMPREF1078_RS09940 0.65 +0.7 604,569 - HMPREF1078_RS09940 0.66 -0.4 604,571 - HMPREF1078_RS09940 0.66 -0.7 604,571 - HMPREF1078_RS09940 0.66 +0.5 604,617 + HMPREF1078_RS09940 0.70 +2.1 604,634 + HMPREF1078_RS09940 0.71 +2.5 604,635 - HMPREF1078_RS09940 0.71 -0.1 604,635 - HMPREF1078_RS09940 0.71 -1.5 604,636 + HMPREF1078_RS09940 0.71 +1.1 604,636 + HMPREF1078_RS09940 0.71 +0.6 604,636 + HMPREF1078_RS09940 0.71 -0.1 604,636 + HMPREF1078_RS09940 0.71 -2.0 604,636 + HMPREF1078_RS09940 0.71 +1.6 604,638 + HMPREF1078_RS09940 0.71 -0.1 604,638 + HMPREF1078_RS09940 0.71 -2.7 604,639 - HMPREF1078_RS09940 0.72 +1.0 604,639 - HMPREF1078_RS09940 0.72 +0.2 604,639 - HMPREF1078_RS09940 0.72 +0.9 604,671 + HMPREF1078_RS09940 0.74 +0.5 604,672 - HMPREF1078_RS09940 0.74 +1.6 604,672 - HMPREF1078_RS09940 0.74 -0.8 604,676 - HMPREF1078_RS09940 0.75 -0.5 604,738 + HMPREF1078_RS09940 0.80 -0.5 604,740 + HMPREF1078_RS09940 0.80 +2.5 604,741 - HMPREF1078_RS09940 0.80 -0.0 604,877 - -0.4 604,953 - -1.4 604,953 - +0.0 605,000 + -0.4 605,000 + -0.1 605,024 - -0.3 605,078 - HMPREF1078_RS09945 0.32 -1.6 605,090 - HMPREF1078_RS09945 0.46 -1.9 605,090 - HMPREF1078_RS09945 0.46 +0.2 605,138 + +0.9 605,164 + +1.1 605,266 + -1.0 605,284 + +1.5 605,284 + -1.7 605,325 - HMPREF1078_RS09950 0.11 -2.5 605,325 - HMPREF1078_RS09950 0.11 +0.0 605,325 - HMPREF1078_RS09950 0.11 +0.7 605,352 - HMPREF1078_RS09950 0.16 -0.5 605,387 + HMPREF1078_RS09950 0.22 +0.8 605,426 + HMPREF1078_RS09950 0.29 +0.4 605,426 + HMPREF1078_RS09950 0.29 -2.4 605,486 + HMPREF1078_RS09950 0.40 +0.2 605,487 - HMPREF1078_RS09950 0.40 -0.8 605,515 + HMPREF1078_RS09950 0.45 +0.6 605,515 + HMPREF1078_RS09950 0.45 -0.1 605,516 - HMPREF1078_RS09950 0.45 -1.1 605,573 + HMPREF1078_RS09950 0.56 +0.3 605,587 - HMPREF1078_RS09950 0.58 -0.4 605,598 - HMPREF1078_RS09950 0.60 -2.1 605,630 + HMPREF1078_RS09950 0.66 -1.1 605,631 - HMPREF1078_RS09950 0.66 -2.2 605,654 + HMPREF1078_RS09950 0.70 +0.3 605,700 - HMPREF1078_RS09950 0.79 +0.5 605,700 - HMPREF1078_RS09950 0.79 +0.0 605,706 + HMPREF1078_RS09950 0.80 -0.0 605,779 - -0.8 605,779 - +1.0 605,779 - +1.5 605,790 + +0.5 605,839 + +0.9 605,839 + +1.0 605,839 + -0.4 605,840 - -0.9 605,846 + -0.7 605,847 - -0.1 605,857 + +0.6 605,858 - +1.2 605,858 - +0.2 605,858 - +0.2 605,983 + +1.0 605,983 + +0.4 605,984 - -0.4 605,984 - +0.7 606,001 + +1.1 606,002 - -1.1 606,005 + +1.0 606,023 + +1.2 606,071 + +0.2 606,084 - -0.5 606,084 - +0.6 606,092 + -0.6 606,092 + -0.7 606,092 + +0.9 606,093 - +0.8 606,093 - -0.3 606,093 - -1.2 606,094 + -1.0 606,095 - -1.1 606,125 + HMPREF1078_RS09955 0.11 +1.9 606,126 - HMPREF1078_RS09955 0.11 -1.3 606,126 - HMPREF1078_RS09955 0.11 +0.2 606,126 - HMPREF1078_RS09955 0.11 -0.2 606,126 - HMPREF1078_RS09955 0.11 -0.3 606,126 - HMPREF1078_RS09955 0.11 -0.3 606,126 - HMPREF1078_RS09955 0.11 -1.1 606,126 - HMPREF1078_RS09955 0.11 -0.2 606,126 - HMPREF1078_RS09955 0.11 +0.1 606,127 + HMPREF1078_RS09955 0.11 -0.6 606,127 + HMPREF1078_RS09955 0.11 -0.1 606,128 - HMPREF1078_RS09955 0.12 +0.9
Or see this region's nucleotide sequence