Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09700 and HMPREF1078_RS09705 are separated by 91 nucleotides HMPREF1078_RS09705 and HMPREF1078_RS09710 are separated by 26 nucleotides HMPREF1078_RS09710 and HMPREF1078_RS09715 are separated by 2 nucleotides HMPREF1078_RS09715 and HMPREF1078_RS09720 are separated by 46 nucleotides
HMPREF1078_RS09700: HMPREF1078_RS09700 - type II toxin-antitoxin system RelE/ParE family toxin, at 538,063 to 538,380
_RS09700
HMPREF1078_RS09705: HMPREF1078_RS09705 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 538,472 to 539,038
_RS09705
HMPREF1078_RS09710: HMPREF1078_RS09710 - cobyrinate a,c-diamide synthase, at 539,065 to 540,402
_RS09710
HMPREF1078_RS09715: HMPREF1078_RS09715 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 540,405 to 541,232
_RS09715
HMPREF1078_RS09720: HMPREF1078_RS09720 - TonB-dependent receptor, at 541,279 to 543,162
_RS09720
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 538.069 kb on - strand at 538.069 kb on - strand at 538.069 kb on - strand at 538.069 kb on - strand at 538.069 kb on - strand at 538.071 kb on - strand at 538.082 kb on - strand at 538.090 kb on + strand at 538.093 kb on - strand at 538.099 kb on + strand, within HMPREF1078_RS09700 at 538.100 kb on - strand, within HMPREF1078_RS09700 at 538.156 kb on - strand, within HMPREF1078_RS09700 at 538.209 kb on - strand, within HMPREF1078_RS09700 at 538.241 kb on - strand, within HMPREF1078_RS09700 at 538.281 kb on - strand, within HMPREF1078_RS09700 at 538.321 kb on - strand, within HMPREF1078_RS09700 at 538.358 kb on - strand at 538.372 kb on - strand at 538.372 kb on - strand at 538.381 kb on - strand at 538.405 kb on + strand at 538.406 kb on - strand at 538.406 kb on - strand at 538.406 kb on - strand at 538.408 kb on - strand at 538.408 kb on - strand at 538.486 kb on + strand at 538.489 kb on - strand at 538.539 kb on + strand, within HMPREF1078_RS09705 at 538.705 kb on + strand, within HMPREF1078_RS09705 at 538.706 kb on - strand, within HMPREF1078_RS09705 at 538.856 kb on - strand, within HMPREF1078_RS09705 at 538.964 kb on - strand, within HMPREF1078_RS09705 at 538.973 kb on - strand, within HMPREF1078_RS09705 at 539.011 kb on + strand at 539.026 kb on + strand at 539.027 kb on - strand at 539.055 kb on + strand at 539.055 kb on + strand at 539.055 kb on + strand at 539.058 kb on - strand at 539.136 kb on + strand at 539.137 kb on - strand at 539.137 kb on - strand at 539.137 kb on - strand at 539.137 kb on - strand at 539.160 kb on - strand at 539.201 kb on + strand, within HMPREF1078_RS09710 at 539.201 kb on + strand, within HMPREF1078_RS09710 at 539.201 kb on + strand, within HMPREF1078_RS09710 at 539.201 kb on + strand, within HMPREF1078_RS09710 at 539.289 kb on - strand, within HMPREF1078_RS09710 at 539.322 kb on + strand, within HMPREF1078_RS09710 at 539.323 kb on - strand, within HMPREF1078_RS09710 at 539.362 kb on - strand, within HMPREF1078_RS09710 at 539.401 kb on + strand, within HMPREF1078_RS09710 at 539.402 kb on - strand, within HMPREF1078_RS09710 at 539.402 kb on - strand, within HMPREF1078_RS09710 at 539.402 kb on - strand, within HMPREF1078_RS09710 at 539.405 kb on + strand, within HMPREF1078_RS09710 at 539.405 kb on + strand, within HMPREF1078_RS09710 at 539.405 kb on + strand, within HMPREF1078_RS09710 at 539.405 kb on + strand, within HMPREF1078_RS09710 at 539.406 kb on - strand, within HMPREF1078_RS09710 at 539.504 kb on + strand, within HMPREF1078_RS09710 at 539.505 kb on - strand, within HMPREF1078_RS09710 at 539.505 kb on - strand, within HMPREF1078_RS09710 at 539.507 kb on - strand, within HMPREF1078_RS09710 at 539.507 kb on - strand, within HMPREF1078_RS09710 at 539.507 kb on - strand, within HMPREF1078_RS09710 at 539.580 kb on - strand, within HMPREF1078_RS09710 at 539.583 kb on + strand, within HMPREF1078_RS09710 at 539.584 kb on - strand, within HMPREF1078_RS09710 at 539.624 kb on + strand, within HMPREF1078_RS09710 at 539.688 kb on + strand, within HMPREF1078_RS09710 at 539.707 kb on - strand, within HMPREF1078_RS09710 at 539.761 kb on + strand, within HMPREF1078_RS09710 at 539.761 kb on + strand, within HMPREF1078_RS09710 at 539.762 kb on - strand, within HMPREF1078_RS09710 at 539.762 kb on - strand, within HMPREF1078_RS09710 at 539.837 kb on - strand, within HMPREF1078_RS09710 at 539.972 kb on - strand, within HMPREF1078_RS09710 at 540.006 kb on - strand, within HMPREF1078_RS09710 at 540.106 kb on - strand, within HMPREF1078_RS09710 at 540.171 kb on - strand, within HMPREF1078_RS09710 at 540.253 kb on - strand, within HMPREF1078_RS09710 at 540.272 kb on + strand at 540.273 kb on - strand at 540.273 kb on - strand at 540.337 kb on + strand at 540.338 kb on - strand at 540.343 kb on - strand at 540.403 kb on + strand at 540.404 kb on - strand at 540.410 kb on - strand at 540.410 kb on - strand at 540.457 kb on + strand at 540.458 kb on - strand at 540.480 kb on - strand at 540.540 kb on + strand, within HMPREF1078_RS09715 at 540.546 kb on - strand, within HMPREF1078_RS09715 at 540.748 kb on + strand, within HMPREF1078_RS09715 at 540.749 kb on - strand, within HMPREF1078_RS09715 at 540.761 kb on + strand, within HMPREF1078_RS09715 at 540.762 kb on - strand, within HMPREF1078_RS09715 at 540.762 kb on - strand, within HMPREF1078_RS09715 at 540.821 kb on + strand, within HMPREF1078_RS09715 at 540.867 kb on - strand, within HMPREF1078_RS09715 at 541.039 kb on - strand, within HMPREF1078_RS09715 at 541.054 kb on - strand, within HMPREF1078_RS09715 at 541.202 kb on + strand at 541.243 kb on - strand at 541.268 kb on - strand at 541.338 kb on + strand at 541.339 kb on - strand at 541.339 kb on - strand at 541.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 538,069 - -0.0 538,069 - -0.7 538,069 - -0.5 538,069 - +1.5 538,069 - -1.9 538,071 - -0.6 538,082 - +0.2 538,090 + -1.3 538,093 - +0.3 538,099 + HMPREF1078_RS09700 0.11 +0.5 538,100 - HMPREF1078_RS09700 0.12 -1.2 538,156 - HMPREF1078_RS09700 0.29 -2.6 538,209 - HMPREF1078_RS09700 0.46 -1.5 538,241 - HMPREF1078_RS09700 0.56 +0.1 538,281 - HMPREF1078_RS09700 0.69 +0.2 538,321 - HMPREF1078_RS09700 0.81 +0.9 538,358 - -1.3 538,372 - +0.5 538,372 - -1.6 538,381 - -2.8 538,405 + +1.0 538,406 - -2.2 538,406 - +0.9 538,406 - +0.9 538,408 - -0.2 538,408 - -1.4 538,486 + -0.1 538,489 - +0.2 538,539 + HMPREF1078_RS09705 0.12 -0.2 538,705 + HMPREF1078_RS09705 0.41 -0.9 538,706 - HMPREF1078_RS09705 0.41 +0.5 538,856 - HMPREF1078_RS09705 0.68 +0.2 538,964 - HMPREF1078_RS09705 0.87 +0.5 538,973 - HMPREF1078_RS09705 0.88 -1.9 539,011 + +0.5 539,026 + -1.5 539,027 - -0.9 539,055 + +0.7 539,055 + -0.7 539,055 + -0.5 539,058 - -0.8 539,136 + +0.0 539,137 - -0.9 539,137 - +0.1 539,137 - -0.1 539,137 - +0.1 539,160 - +0.1 539,201 + HMPREF1078_RS09710 0.10 -0.1 539,201 + HMPREF1078_RS09710 0.10 +0.5 539,201 + HMPREF1078_RS09710 0.10 -0.5 539,201 + HMPREF1078_RS09710 0.10 -0.3 539,289 - HMPREF1078_RS09710 0.17 +0.5 539,322 + HMPREF1078_RS09710 0.19 -1.3 539,323 - HMPREF1078_RS09710 0.19 -0.9 539,362 - HMPREF1078_RS09710 0.22 -1.6 539,401 + HMPREF1078_RS09710 0.25 +1.6 539,402 - HMPREF1078_RS09710 0.25 -1.7 539,402 - HMPREF1078_RS09710 0.25 -0.0 539,402 - HMPREF1078_RS09710 0.25 +0.1 539,405 + HMPREF1078_RS09710 0.25 +1.6 539,405 + HMPREF1078_RS09710 0.25 -0.1 539,405 + HMPREF1078_RS09710 0.25 -1.0 539,405 + HMPREF1078_RS09710 0.25 -1.5 539,406 - HMPREF1078_RS09710 0.25 -0.5 539,504 + HMPREF1078_RS09710 0.33 +0.5 539,505 - HMPREF1078_RS09710 0.33 +1.9 539,505 - HMPREF1078_RS09710 0.33 +0.9 539,507 - HMPREF1078_RS09710 0.33 +2.1 539,507 - HMPREF1078_RS09710 0.33 +0.5 539,507 - HMPREF1078_RS09710 0.33 -1.1 539,580 - HMPREF1078_RS09710 0.38 -1.0 539,583 + HMPREF1078_RS09710 0.39 +0.1 539,584 - HMPREF1078_RS09710 0.39 +0.6 539,624 + HMPREF1078_RS09710 0.42 -0.1 539,688 + HMPREF1078_RS09710 0.47 +0.5 539,707 - HMPREF1078_RS09710 0.48 -1.3 539,761 + HMPREF1078_RS09710 0.52 -0.7 539,761 + HMPREF1078_RS09710 0.52 -0.4 539,762 - HMPREF1078_RS09710 0.52 +2.6 539,762 - HMPREF1078_RS09710 0.52 -0.0 539,837 - HMPREF1078_RS09710 0.58 -0.2 539,972 - HMPREF1078_RS09710 0.68 -1.6 540,006 - HMPREF1078_RS09710 0.70 -1.2 540,106 - HMPREF1078_RS09710 0.78 +0.5 540,171 - HMPREF1078_RS09710 0.83 -0.1 540,253 - HMPREF1078_RS09710 0.89 +2.0 540,272 + -0.7 540,273 - -1.5 540,273 - -0.1 540,337 + +0.9 540,338 - +0.8 540,343 - +1.3 540,403 + -1.0 540,404 - -0.9 540,410 - -0.2 540,410 - +1.1 540,457 + +0.1 540,458 - -0.7 540,480 - -0.3 540,540 + HMPREF1078_RS09715 0.16 +1.5 540,546 - HMPREF1078_RS09715 0.17 -0.7 540,748 + HMPREF1078_RS09715 0.41 +2.5 540,749 - HMPREF1078_RS09715 0.42 +1.5 540,761 + HMPREF1078_RS09715 0.43 +0.5 540,762 - HMPREF1078_RS09715 0.43 +0.9 540,762 - HMPREF1078_RS09715 0.43 -0.3 540,821 + HMPREF1078_RS09715 0.50 +2.5 540,867 - HMPREF1078_RS09715 0.56 +0.5 541,039 - HMPREF1078_RS09715 0.77 +1.1 541,054 - HMPREF1078_RS09715 0.78 -0.1 541,202 + +2.5 541,243 - -0.1 541,268 - +1.3 541,338 + +0.1 541,339 - +0.3 541,339 - +0.6 541,396 - -0.0
Or see this region's nucleotide sequence