Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09620 and HMPREF1078_RS09625 are separated by 322 nucleotides HMPREF1078_RS09625 and HMPREF1078_RS09630 are separated by 9 nucleotides HMPREF1078_RS09630 and HMPREF1078_RS09635 are separated by 50 nucleotides HMPREF1078_RS09635 and HMPREF1078_RS09640 are separated by 99 nucleotides
HMPREF1078_RS09620: HMPREF1078_RS09620 - amino acid permease, at 526,749 to 528,404
_RS09620
HMPREF1078_RS09625: HMPREF1078_RS09625 - tRNA-Leu, at 528,727 to 528,810
_RS09625
HMPREF1078_RS09630: HMPREF1078_RS09630 - tRNA-Leu, at 528,820 to 528,901
_RS09630
HMPREF1078_RS09635: HMPREF1078_RS09635 - tRNA-Gly, at 528,952 to 529,027
_RS09635
HMPREF1078_RS09640: HMPREF1078_RS09640 - SGNH/GDSL hydrolase family protein, at 529,127 to 529,897
_RS09640
Position (kb) 528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 527.780 kb on - strand, within HMPREF1078_RS09620 at 527.821 kb on + strand, within HMPREF1078_RS09620 at 527.822 kb on - strand, within HMPREF1078_RS09620 at 527.822 kb on - strand, within HMPREF1078_RS09620 at 527.824 kb on + strand, within HMPREF1078_RS09620 at 527.825 kb on - strand, within HMPREF1078_RS09620 at 527.843 kb on + strand, within HMPREF1078_RS09620 at 528.133 kb on + strand, within HMPREF1078_RS09620 at 528.155 kb on + strand, within HMPREF1078_RS09620 at 528.155 kb on + strand, within HMPREF1078_RS09620 at 528.156 kb on - strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.160 kb on - strand, within HMPREF1078_RS09620 at 528.182 kb on + strand, within HMPREF1078_RS09620 at 528.182 kb on + strand, within HMPREF1078_RS09620 at 528.183 kb on - strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.312 kb on - strand at 528.363 kb on + strand at 528.363 kb on + strand at 528.363 kb on + strand at 528.364 kb on + strand at 528.364 kb on - strand at 528.364 kb on - strand at 528.403 kb on - strand at 528.416 kb on - strand at 528.440 kb on + strand at 528.441 kb on - strand at 528.441 kb on - strand at 528.441 kb on - strand at 528.445 kb on + strand at 528.446 kb on - strand at 528.461 kb on - strand at 528.494 kb on + strand at 528.494 kb on + strand at 528.500 kb on - strand at 528.512 kb on + strand at 528.518 kb on + strand at 528.529 kb on + strand at 528.529 kb on + strand at 528.530 kb on - strand at 528.532 kb on + strand at 528.533 kb on - strand at 528.533 kb on - strand at 528.538 kb on - strand at 528.538 kb on - strand at 528.556 kb on - strand at 528.570 kb on + strand at 528.570 kb on + strand at 528.570 kb on + strand at 528.571 kb on - strand at 528.571 kb on - strand at 528.573 kb on - strand at 528.582 kb on + strand at 528.583 kb on - strand at 528.583 kb on - strand at 528.685 kb on + strand at 528.685 kb on + strand at 528.686 kb on - strand at 528.687 kb on + strand at 528.688 kb on - strand at 528.704 kb on + strand at 528.704 kb on + strand at 528.705 kb on - strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.710 kb on + strand at 528.711 kb on - strand at 528.711 kb on - strand at 528.717 kb on + strand at 528.718 kb on - strand at 528.718 kb on - strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.728 kb on - strand at 528.768 kb on + strand, within HMPREF1078_RS09625 at 528.790 kb on + strand, within HMPREF1078_RS09625 at 528.912 kb on + strand at 528.912 kb on + strand at 528.912 kb on + strand at 528.913 kb on - strand at 528.913 kb on - strand at 528.934 kb on - strand at 528.986 kb on - strand, within HMPREF1078_RS09635 at 529.000 kb on + strand, within HMPREF1078_RS09635 at 529.000 kb on + strand, within HMPREF1078_RS09635 at 529.007 kb on + strand, within HMPREF1078_RS09635 at 529.045 kb on + strand at 529.092 kb on + strand at 529.123 kb on + strand at 529.128 kb on + strand at 529.268 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.346 kb on + strand, within HMPREF1078_RS09640 at 529.349 kb on - strand, within HMPREF1078_RS09640 at 529.388 kb on + strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.418 kb on - strand, within HMPREF1078_RS09640 at 529.449 kb on + strand, within HMPREF1078_RS09640 at 529.469 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.487 kb on - strand, within HMPREF1078_RS09640 at 529.665 kb on + strand, within HMPREF1078_RS09640 at 529.666 kb on - strand, within HMPREF1078_RS09640 at 529.705 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 527,780 - HMPREF1078_RS09620 0.62 -0.6 527,821 + HMPREF1078_RS09620 0.65 +0.1 527,822 - HMPREF1078_RS09620 0.65 +0.2 527,822 - HMPREF1078_RS09620 0.65 +0.4 527,824 + HMPREF1078_RS09620 0.65 +0.8 527,825 - HMPREF1078_RS09620 0.65 -0.6 527,843 + HMPREF1078_RS09620 0.66 +0.4 528,133 + HMPREF1078_RS09620 0.84 -0.1 528,155 + HMPREF1078_RS09620 0.85 -0.1 528,155 + HMPREF1078_RS09620 0.85 +0.6 528,156 - HMPREF1078_RS09620 0.85 -1.2 528,159 + HMPREF1078_RS09620 0.85 -1.0 528,159 + HMPREF1078_RS09620 0.85 -0.4 528,159 + HMPREF1078_RS09620 0.85 -0.1 528,160 - HMPREF1078_RS09620 0.85 +0.2 528,182 + HMPREF1078_RS09620 0.87 +0.6 528,182 + HMPREF1078_RS09620 0.87 -1.7 528,183 - HMPREF1078_RS09620 0.87 -1.6 528,233 + HMPREF1078_RS09620 0.90 +0.2 528,233 + HMPREF1078_RS09620 0.90 +0.0 528,233 + HMPREF1078_RS09620 0.90 +0.1 528,233 + HMPREF1078_RS09620 0.90 -0.3 528,234 - HMPREF1078_RS09620 0.90 +1.2 528,234 - HMPREF1078_RS09620 0.90 +0.2 528,234 - HMPREF1078_RS09620 0.90 +1.0 528,312 - +1.1 528,363 + -0.0 528,363 + -0.6 528,363 + -0.7 528,364 + -0.7 528,364 - -1.1 528,364 - +1.7 528,403 - -2.2 528,416 - -0.9 528,440 + -0.4 528,441 - +0.0 528,441 - -1.1 528,441 - -0.7 528,445 + +1.1 528,446 - +0.4 528,461 - +0.1 528,494 + +0.5 528,494 + +1.5 528,500 - -0.5 528,512 + -1.4 528,518 + +0.0 528,529 + +1.0 528,529 + -0.9 528,530 - -0.4 528,532 + +3.3 528,533 - +0.9 528,533 - -0.2 528,538 - +0.6 528,538 - -1.1 528,556 - +0.6 528,570 + -0.1 528,570 + -0.7 528,570 + -0.4 528,571 - +0.4 528,571 - -0.4 528,573 - -0.1 528,582 + -0.2 528,583 - -1.0 528,583 - -0.5 528,685 + +1.0 528,685 + -1.1 528,686 - +0.7 528,687 + +0.8 528,688 - +0.6 528,704 + -1.0 528,704 + -1.2 528,705 - +1.4 528,708 + -0.9 528,708 + +0.1 528,708 + -1.3 528,708 + -0.6 528,708 + -0.5 528,708 + -0.5 528,708 + +0.2 528,708 + -1.8 528,708 + +1.6 528,708 + +0.3 528,708 + -0.7 528,708 + +0.7 528,708 + +0.4 528,709 - -0.4 528,709 - +0.3 528,709 - +1.1 528,709 - -0.3 528,709 - +0.4 528,709 - +0.2 528,709 - -0.9 528,709 - -0.1 528,709 - -0.5 528,710 + -0.9 528,711 - +0.4 528,711 - +0.6 528,717 + -1.9 528,718 - +0.0 528,718 - -1.1 528,723 + +0.5 528,723 + -0.5 528,723 + +0.4 528,723 + +0.6 528,723 + -1.0 528,723 + +1.1 528,723 + -0.4 528,724 - +1.0 528,724 - +0.3 528,724 - -0.4 528,724 - -1.2 528,728 - -1.2 528,768 + HMPREF1078_RS09625 0.49 -1.6 528,790 + HMPREF1078_RS09625 0.75 -1.9 528,912 + -1.2 528,912 + +0.3 528,912 + -0.8 528,913 - -1.0 528,913 - +1.1 528,934 - -0.3 528,986 - HMPREF1078_RS09635 0.45 -0.4 529,000 + HMPREF1078_RS09635 0.63 +1.0 529,000 + HMPREF1078_RS09635 0.63 +1.5 529,007 + HMPREF1078_RS09635 0.72 -0.1 529,045 + +0.7 529,092 + +0.2 529,123 + -0.3 529,128 + +0.1 529,268 + HMPREF1078_RS09640 0.18 -1.6 529,273 + HMPREF1078_RS09640 0.19 -1.2 529,273 + HMPREF1078_RS09640 0.19 +0.4 529,346 + HMPREF1078_RS09640 0.28 -0.3 529,349 - HMPREF1078_RS09640 0.29 +0.2 529,388 + HMPREF1078_RS09640 0.34 +1.2 529,389 - HMPREF1078_RS09640 0.34 +0.3 529,389 - HMPREF1078_RS09640 0.34 +0.6 529,418 - HMPREF1078_RS09640 0.38 -0.7 529,449 + HMPREF1078_RS09640 0.42 -0.5 529,469 - HMPREF1078_RS09640 0.44 +1.4 529,471 - HMPREF1078_RS09640 0.45 +0.4 529,471 - HMPREF1078_RS09640 0.45 +0.3 529,487 - HMPREF1078_RS09640 0.47 +1.9 529,665 + HMPREF1078_RS09640 0.70 -0.1 529,666 - HMPREF1078_RS09640 0.70 -0.4 529,705 + HMPREF1078_RS09640 0.75 -0.3 529,790 + HMPREF1078_RS09640 0.86 -0.7 529,790 + HMPREF1078_RS09640 0.86 -0.6 529,791 - HMPREF1078_RS09640 0.86 -2.8 529,791 - HMPREF1078_RS09640 0.86 +0.9 529,791 - HMPREF1078_RS09640 0.86 +0.5
Or see this region's nucleotide sequence