Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09285 and HMPREF1078_RS09290 are separated by 177 nucleotides HMPREF1078_RS09290 and HMPREF1078_RS09295 are separated by 36 nucleotides HMPREF1078_RS09295 and HMPREF1078_RS09300 overlap by 4 nucleotides
HMPREF1078_RS09285: HMPREF1078_RS09285 - hypothetical protein, at 445,716 to 446,390
_RS09285
HMPREF1078_RS09290: HMPREF1078_RS09290 - DUF4134 domain-containing protein, at 446,568 to 446,879
_RS09290
HMPREF1078_RS09295: HMPREF1078_RS09295 - DUF4133 domain-containing protein, at 446,916 to 447,248
_RS09295
HMPREF1078_RS09300: HMPREF1078_RS09300 - TraG family conjugative transposon ATPase, at 447,245 to 449,761
_RS09300
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 445.962 kb on - strand, within HMPREF1078_RS09285 at 446.348 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.389 kb on - strand at 446.397 kb on - strand at 446.397 kb on - strand at 446.406 kb on - strand at 446.507 kb on - strand at 446.533 kb on - strand at 446.695 kb on - strand, within HMPREF1078_RS09290 at 446.695 kb on - strand, within HMPREF1078_RS09290 at 446.895 kb on - strand at 446.895 kb on - strand at 446.897 kb on - strand at 446.897 kb on - strand at 446.899 kb on - strand at 446.899 kb on - strand at 446.899 kb on - strand at 446.902 kb on - strand at 446.902 kb on - strand at 446.983 kb on - strand, within HMPREF1078_RS09295 at 447.039 kb on + strand, within HMPREF1078_RS09295 at 447.218 kb on - strand at 447.218 kb on - strand at 447.372 kb on - strand at 447.401 kb on - strand at 447.451 kb on - strand at 447.808 kb on - strand, within HMPREF1078_RS09300 at 447.808 kb on - strand, within HMPREF1078_RS09300 at 447.816 kb on - strand, within HMPREF1078_RS09300 at 448.043 kb on - strand, within HMPREF1078_RS09300 at 448.043 kb on - strand, within HMPREF1078_RS09300 at 448.047 kb on - strand, within HMPREF1078_RS09300
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 445,962 - HMPREF1078_RS09285 0.36 +0.1 446,348 - -1.8 446,387 - -0.0 446,387 - -1.4 446,387 - +0.9 446,389 - -0.1 446,397 - -0.1 446,397 - +0.4 446,406 - +0.1 446,507 - +0.1 446,533 - +0.5 446,695 - HMPREF1078_RS09290 0.41 +0.3 446,695 - HMPREF1078_RS09290 0.41 -1.4 446,895 - +0.5 446,895 - -0.7 446,897 - -1.0 446,897 - -0.5 446,899 - -0.5 446,899 - -1.7 446,899 - -0.1 446,902 - +0.1 446,902 - -1.7 446,983 - HMPREF1078_RS09295 0.20 -0.4 447,039 + HMPREF1078_RS09295 0.37 -2.2 447,218 - +0.4 447,218 - -0.0 447,372 - +1.0 447,401 - -0.3 447,451 - -0.8 447,808 - HMPREF1078_RS09300 0.22 -1.8 447,808 - HMPREF1078_RS09300 0.22 -0.3 447,816 - HMPREF1078_RS09300 0.23 +0.2 448,043 - HMPREF1078_RS09300 0.32 +0.7 448,043 - HMPREF1078_RS09300 0.32 -0.8 448,047 - HMPREF1078_RS09300 0.32 +0.3
Or see this region's nucleotide sequence