Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08990 and HMPREF1078_RS08995 overlap by 22 nucleotides HMPREF1078_RS08995 and HMPREF1078_RS09000 are separated by 421 nucleotides HMPREF1078_RS09000 and HMPREF1078_RS09005 are separated by 2 nucleotides HMPREF1078_RS09005 and HMPREF1078_RS09010 are separated by 2 nucleotides HMPREF1078_RS09010 and HMPREF1078_RS09015 are separated by 16 nucleotides
HMPREF1078_RS08990: HMPREF1078_RS08990 - conjugal transfer protein MobB, at 400,891 to 402,138
_RS08990
HMPREF1078_RS08995: HMPREF1078_RS08995 - conjugal transfer protein MobA, at 402,117 to 402,545
_RS08995
HMPREF1078_RS09000: HMPREF1078_RS09000 - ParA family protein, at 402,967 to 404,016
_RS09000
HMPREF1078_RS09005: HMPREF1078_RS09005 - DUF3408 domain-containing protein, at 404,019 to 404,459
_RS09005
HMPREF1078_RS09010: HMPREF1078_RS09010 - DUF3408 domain-containing protein, at 404,462 to 404,815
_RS09010
HMPREF1078_RS09015: HMPREF1078_RS09015 - hypothetical protein, at 404,832 to 405,560
_RS09015
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.004 kb on + strand, within HMPREF1078_RS08990 at 402.005 kb on - strand, within HMPREF1078_RS08990 at 402.005 kb on - strand, within HMPREF1078_RS08990 at 402.033 kb on - strand at 402.033 kb on - strand at 402.033 kb on - strand at 402.118 kb on + strand at 402.118 kb on + strand at 402.119 kb on - strand at 402.281 kb on - strand, within HMPREF1078_RS08995 at 402.335 kb on - strand, within HMPREF1078_RS08995 at 402.335 kb on - strand, within HMPREF1078_RS08995 at 402.711 kb on - strand at 402.711 kb on - strand at 402.905 kb on - strand at 402.921 kb on - strand at 403.073 kb on - strand, within HMPREF1078_RS09000 at 403.337 kb on - strand, within HMPREF1078_RS09000 at 403.337 kb on - strand, within HMPREF1078_RS09000 at 403.448 kb on - strand, within HMPREF1078_RS09000 at 403.448 kb on - strand, within HMPREF1078_RS09000 at 403.499 kb on - strand, within HMPREF1078_RS09000 at 404.252 kb on - strand, within HMPREF1078_RS09005 at 404.273 kb on - strand, within HMPREF1078_RS09005 at 404.371 kb on - strand, within HMPREF1078_RS09005 at 404.431 kb on - strand at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.516 kb on - strand, within HMPREF1078_RS09010 at 404.592 kb on - strand, within HMPREF1078_RS09010 at 404.623 kb on - strand, within HMPREF1078_RS09010 at 404.649 kb on - strand, within HMPREF1078_RS09010 at 404.675 kb on - strand, within HMPREF1078_RS09010 at 404.675 kb on - strand, within HMPREF1078_RS09010 at 404.727 kb on - strand, within HMPREF1078_RS09010
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 402,004 + HMPREF1078_RS08990 0.89 +0.2 402,004 + HMPREF1078_RS08990 0.89 -0.6 402,004 + HMPREF1078_RS08990 0.89 -2.2 402,005 - HMPREF1078_RS08990 0.89 +0.7 402,005 - HMPREF1078_RS08990 0.89 +0.0 402,033 - -1.6 402,033 - +1.5 402,033 - -0.1 402,118 + -0.2 402,118 + -3.2 402,119 - -1.1 402,281 - HMPREF1078_RS08995 0.38 +0.2 402,335 - HMPREF1078_RS08995 0.51 +1.2 402,335 - HMPREF1078_RS08995 0.51 +0.5 402,711 - -0.4 402,711 - -0.8 402,905 - +0.2 402,921 - +0.3 403,073 - HMPREF1078_RS09000 0.10 +0.6 403,337 - HMPREF1078_RS09000 0.35 -3.4 403,337 - HMPREF1078_RS09000 0.35 -1.0 403,448 - HMPREF1078_RS09000 0.46 -0.7 403,448 - HMPREF1078_RS09000 0.46 +0.1 403,499 - HMPREF1078_RS09000 0.51 -0.6 404,252 - HMPREF1078_RS09005 0.53 -1.7 404,273 - HMPREF1078_RS09005 0.58 +1.0 404,371 - HMPREF1078_RS09005 0.80 -1.1 404,431 - -1.2 404,516 - HMPREF1078_RS09010 0.15 -0.0 404,516 - HMPREF1078_RS09010 0.15 -0.0 404,516 - HMPREF1078_RS09010 0.15 -0.1 404,592 - HMPREF1078_RS09010 0.37 -1.2 404,623 - HMPREF1078_RS09010 0.45 +0.6 404,649 - HMPREF1078_RS09010 0.53 +0.6 404,675 - HMPREF1078_RS09010 0.60 -0.1 404,675 - HMPREF1078_RS09010 0.60 +0.9 404,727 - HMPREF1078_RS09010 0.75 +2.5
Or see this region's nucleotide sequence