Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08910 and HMPREF1078_RS08915 are separated by 31 nucleotides HMPREF1078_RS08915 and HMPREF1078_RS08920 are separated by 201 nucleotides HMPREF1078_RS08920 and HMPREF1078_RS08925 are separated by 3 nucleotides HMPREF1078_RS08925 and HMPREF1078_RS08930 are separated by 20 nucleotides
HMPREF1078_RS08910: HMPREF1078_RS08910 - helix-turn-helix domain-containing protein, at 374,530 to 374,835
_RS08910
HMPREF1078_RS08915: HMPREF1078_RS08915 - helix-turn-helix domain-containing protein, at 374,867 to 375,166
_RS08915
HMPREF1078_RS08920: HMPREF1078_RS08920 - helix-turn-helix domain-containing protein, at 375,368 to 375,730
_RS08920
HMPREF1078_RS08925: HMPREF1078_RS08925 - helix-turn-helix domain-containing protein, at 375,734 to 376,084
_RS08925
HMPREF1078_RS08930: HMPREF1078_RS08930 - DUF3945 domain-containing protein, at 376,105 to 377,676
_RS08930
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.836 kb on - strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.883 kb on + strand at 374.934 kb on + strand, within HMPREF1078_RS08915 at 375.150 kb on - strand at 375.153 kb on - strand at 375.153 kb on - strand at 375.214 kb on - strand at 375.286 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.438 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.729 kb on - strand at 375.729 kb on - strand at 375.975 kb on - strand, within HMPREF1078_RS08925 at 376.016 kb on - strand, within HMPREF1078_RS08925 at 376.040 kb on - strand, within HMPREF1078_RS08925 at 376.050 kb on - strand at 376.050 kb on - strand at 376.365 kb on - strand, within HMPREF1078_RS08930 at 376.685 kb on - strand, within HMPREF1078_RS08930
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 374,836 - -0.4 374,858 + +0.4 374,858 + +0.1 374,858 + -2.3 374,883 + -0.1 374,934 + HMPREF1078_RS08915 0.22 -1.9 375,150 - -0.6 375,153 - +0.5 375,153 - -0.9 375,214 - -0.1 375,286 - -0.4 375,299 - +1.9 375,299 - -0.1 375,299 - -1.0 375,438 - HMPREF1078_RS08920 0.19 +0.4 375,646 - HMPREF1078_RS08920 0.77 +0.5 375,646 - HMPREF1078_RS08920 0.77 -0.7 375,729 - -1.9 375,729 - +0.2 375,975 - HMPREF1078_RS08925 0.69 -0.2 376,016 - HMPREF1078_RS08925 0.80 -1.0 376,040 - HMPREF1078_RS08925 0.87 -0.6 376,050 - -3.1 376,050 - +1.8 376,365 - HMPREF1078_RS08930 0.17 +0.2 376,685 - HMPREF1078_RS08930 0.37 -0.2
Or see this region's nucleotide sequence