Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08545 and HMPREF1078_RS08550 are separated by 67 nucleotides HMPREF1078_RS08550 and HMPREF1078_RS08555 are separated by 170 nucleotides HMPREF1078_RS08555 and HMPREF1078_RS08560 are separated by 101 nucleotides
HMPREF1078_RS08545: HMPREF1078_RS08545 - PaaI family thioesterase, at 288,379 to 288,852
_RS08545
HMPREF1078_RS08550: HMPREF1078_RS08550 - DUF456 domain-containing protein, at 288,920 to 289,396
_RS08550
HMPREF1078_RS08555: HMPREF1078_RS08555 - DUF3795 domain-containing protein, at 289,567 to 289,905
_RS08555
HMPREF1078_RS08560: HMPREF1078_RS08560 - PhoH family protein, at 290,007 to 291,338
_RS08560
Position (kb) 289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 288.570 kb on + strand, within HMPREF1078_RS08545 at 288.571 kb on - strand, within HMPREF1078_RS08545 at 288.633 kb on + strand, within HMPREF1078_RS08545 at 288.693 kb on + strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.694 kb on - strand, within HMPREF1078_RS08545 at 288.731 kb on + strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.737 kb on - strand, within HMPREF1078_RS08545 at 288.768 kb on + strand, within HMPREF1078_RS08545 at 288.810 kb on + strand at 288.810 kb on + strand at 288.810 kb on + strand at 288.810 kb on + strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.811 kb on - strand at 288.812 kb on + strand at 288.812 kb on + strand at 288.812 kb on + strand at 288.813 kb on - strand at 288.813 kb on - strand at 288.813 kb on - strand at 288.853 kb on - strand at 288.927 kb on - strand at 288.950 kb on - strand at 289.065 kb on - strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.138 kb on + strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.139 kb on - strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.173 kb on + strand, within HMPREF1078_RS08550 at 289.201 kb on - strand, within HMPREF1078_RS08550 at 289.219 kb on + strand, within HMPREF1078_RS08550 at 289.253 kb on - strand, within HMPREF1078_RS08550 at 289.302 kb on + strand, within HMPREF1078_RS08550 at 289.322 kb on + strand, within HMPREF1078_RS08550 at 289.326 kb on - strand, within HMPREF1078_RS08550 at 289.368 kb on - strand at 289.391 kb on - strand at 289.392 kb on + strand at 289.396 kb on + strand at 289.396 kb on + strand at 289.397 kb on - strand at 289.397 kb on - strand at 289.397 kb on - strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.398 kb on + strand at 289.399 kb on - strand at 289.399 kb on - strand at 289.399 kb on - strand at 289.404 kb on + strand at 289.417 kb on + strand at 289.417 kb on + strand at 289.417 kb on + strand at 289.421 kb on + strand at 289.421 kb on + strand at 289.422 kb on - strand at 289.422 kb on - strand at 289.427 kb on + strand at 289.437 kb on + strand at 289.463 kb on + strand at 289.508 kb on - strand at 289.564 kb on + strand at 289.565 kb on - strand at 289.569 kb on - strand at 289.635 kb on + strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.636 kb on - strand, within HMPREF1078_RS08555 at 289.690 kb on - strand, within HMPREF1078_RS08555 at 289.710 kb on + strand, within HMPREF1078_RS08555 at 289.710 kb on + strand, within HMPREF1078_RS08555 at 289.711 kb on - strand, within HMPREF1078_RS08555 at 289.749 kb on + strand, within HMPREF1078_RS08555 at 289.895 kb on - strand at 289.942 kb on - strand at 289.944 kb on + strand at 289.945 kb on - strand at 289.950 kb on - strand at 289.972 kb on + strand at 289.972 kb on + strand at 289.975 kb on + strand at 289.976 kb on - strand at 290.026 kb on - strand at 290.105 kb on + strand at 290.105 kb on + strand at 290.106 kb on - strand at 290.106 kb on - strand at 290.108 kb on - strand at 290.120 kb on + strand at 290.120 kb on + strand at 290.172 kb on + strand, within HMPREF1078_RS08560 at 290.173 kb on - strand, within HMPREF1078_RS08560 at 290.253 kb on - strand, within HMPREF1078_RS08560 at 290.376 kb on - strand, within HMPREF1078_RS08560 at 290.378 kb on + strand, within HMPREF1078_RS08560 at 290.378 kb on + strand, within HMPREF1078_RS08560 at 290.379 kb on - strand, within HMPREF1078_RS08560 at 290.408 kb on + strand, within HMPREF1078_RS08560 at 290.410 kb on + strand, within HMPREF1078_RS08560 at 290.411 kb on - strand, within HMPREF1078_RS08560 at 290.477 kb on + strand, within HMPREF1078_RS08560 at 290.646 kb on - strand, within HMPREF1078_RS08560 at 290.646 kb on - strand, within HMPREF1078_RS08560 at 290.681 kb on + strand, within HMPREF1078_RS08560 at 290.681 kb on + strand, within HMPREF1078_RS08560 at 290.696 kb on + strand, within HMPREF1078_RS08560 at 290.718 kb on - strand, within HMPREF1078_RS08560 at 290.735 kb on + strand, within HMPREF1078_RS08560 at 290.767 kb on - strand, within HMPREF1078_RS08560 at 290.806 kb on + strand, within HMPREF1078_RS08560 at 290.806 kb on + strand, within HMPREF1078_RS08560 at 290.806 kb on + strand, within HMPREF1078_RS08560 at 290.806 kb on + strand, within HMPREF1078_RS08560 at 290.807 kb on - strand, within HMPREF1078_RS08560 at 290.807 kb on - strand, within HMPREF1078_RS08560 at 290.807 kb on - strand, within HMPREF1078_RS08560 at 290.832 kb on + strand, within HMPREF1078_RS08560 at 290.843 kb on - strand, within HMPREF1078_RS08560 at 290.876 kb on + strand, within HMPREF1078_RS08560 at 290.895 kb on - strand, within HMPREF1078_RS08560 at 290.896 kb on + strand, within HMPREF1078_RS08560 at 290.896 kb on + strand, within HMPREF1078_RS08560 at 290.896 kb on + strand, within HMPREF1078_RS08560 at 290.897 kb on - strand, within HMPREF1078_RS08560 at 290.897 kb on - strand, within HMPREF1078_RS08560 at 290.897 kb on - strand, within HMPREF1078_RS08560 at 290.897 kb on - strand, within HMPREF1078_RS08560
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 288,570 + HMPREF1078_RS08545 0.40 -0.9 288,571 - HMPREF1078_RS08545 0.41 -0.3 288,633 + HMPREF1078_RS08545 0.54 +0.3 288,693 + HMPREF1078_RS08545 0.66 +1.3 288,694 - HMPREF1078_RS08545 0.66 +0.0 288,694 - HMPREF1078_RS08545 0.66 -0.9 288,694 - HMPREF1078_RS08545 0.66 -0.9 288,731 + HMPREF1078_RS08545 0.74 +0.7 288,737 - HMPREF1078_RS08545 0.76 -1.4 288,737 - HMPREF1078_RS08545 0.76 +0.5 288,737 - HMPREF1078_RS08545 0.76 -0.4 288,768 + HMPREF1078_RS08545 0.82 -0.4 288,810 + +0.6 288,810 + -0.1 288,810 + -1.2 288,810 + -1.5 288,811 - +0.1 288,811 - -0.4 288,811 - +1.4 288,811 - +0.5 288,811 - -0.4 288,812 + +1.0 288,812 + -0.7 288,812 + -1.0 288,813 - +0.6 288,813 - +0.7 288,813 - -0.6 288,853 - -2.3 288,927 - -0.8 288,950 - -0.9 289,065 - HMPREF1078_RS08550 0.30 +0.6 289,138 + HMPREF1078_RS08550 0.46 -0.3 289,138 + HMPREF1078_RS08550 0.46 -0.6 289,138 + HMPREF1078_RS08550 0.46 -2.4 289,139 - HMPREF1078_RS08550 0.46 -0.9 289,139 - HMPREF1078_RS08550 0.46 +0.5 289,139 - HMPREF1078_RS08550 0.46 -1.0 289,139 - HMPREF1078_RS08550 0.46 +1.1 289,139 - HMPREF1078_RS08550 0.46 +0.8 289,173 + HMPREF1078_RS08550 0.53 +0.7 289,173 + HMPREF1078_RS08550 0.53 -0.7 289,173 + HMPREF1078_RS08550 0.53 +0.2 289,201 - HMPREF1078_RS08550 0.59 -0.6 289,219 + HMPREF1078_RS08550 0.63 +1.6 289,253 - HMPREF1078_RS08550 0.70 +0.8 289,302 + HMPREF1078_RS08550 0.80 +0.0 289,322 + HMPREF1078_RS08550 0.84 -0.2 289,326 - HMPREF1078_RS08550 0.85 -1.7 289,368 - +0.1 289,391 - +1.0 289,392 + +2.2 289,396 + -0.4 289,396 + +0.4 289,397 - -1.4 289,397 - -3.2 289,397 - -0.1 289,398 + -1.7 289,398 + -0.7 289,398 + +1.8 289,398 + -0.6 289,398 + -0.2 289,398 + -0.6 289,399 - +0.0 289,399 - -0.1 289,399 - -1.2 289,404 + +1.2 289,417 + +1.6 289,417 + +0.1 289,417 + -0.9 289,421 + +0.1 289,421 + -0.7 289,422 - -0.0 289,422 - -0.7 289,427 + -2.1 289,437 + +0.8 289,463 + -2.7 289,508 - +0.2 289,564 + +0.8 289,565 - +0.6 289,569 - +0.7 289,635 + HMPREF1078_RS08555 0.20 +0.3 289,636 - HMPREF1078_RS08555 0.20 -0.0 289,636 - HMPREF1078_RS08555 0.20 -0.7 289,636 - HMPREF1078_RS08555 0.20 -1.7 289,690 - HMPREF1078_RS08555 0.36 -1.9 289,710 + HMPREF1078_RS08555 0.42 -1.4 289,710 + HMPREF1078_RS08555 0.42 +0.1 289,711 - HMPREF1078_RS08555 0.42 +1.4 289,749 + HMPREF1078_RS08555 0.54 -0.3 289,895 - +0.3 289,942 - -0.2 289,944 + +0.3 289,945 - +0.1 289,950 - -1.2 289,972 + -1.4 289,972 + +1.3 289,975 + -0.1 289,976 - -2.7 290,026 - +0.0 290,105 + -0.8 290,105 + +0.3 290,106 - +2.4 290,106 - -0.5 290,108 - -0.6 290,120 + +1.0 290,120 + -0.1 290,172 + HMPREF1078_RS08560 0.12 -1.5 290,173 - HMPREF1078_RS08560 0.12 +0.7 290,253 - HMPREF1078_RS08560 0.18 -2.6 290,376 - HMPREF1078_RS08560 0.28 -0.2 290,378 + HMPREF1078_RS08560 0.28 -0.9 290,378 + HMPREF1078_RS08560 0.28 -1.7 290,379 - HMPREF1078_RS08560 0.28 -1.5 290,408 + HMPREF1078_RS08560 0.30 -0.0 290,410 + HMPREF1078_RS08560 0.30 -0.7 290,411 - HMPREF1078_RS08560 0.30 +0.1 290,477 + HMPREF1078_RS08560 0.35 -0.8 290,646 - HMPREF1078_RS08560 0.48 -0.0 290,646 - HMPREF1078_RS08560 0.48 +0.3 290,681 + HMPREF1078_RS08560 0.51 -1.0 290,681 + HMPREF1078_RS08560 0.51 -0.1 290,696 + HMPREF1078_RS08560 0.52 -0.9 290,718 - HMPREF1078_RS08560 0.53 -2.1 290,735 + HMPREF1078_RS08560 0.55 -0.8 290,767 - HMPREF1078_RS08560 0.57 +0.3 290,806 + HMPREF1078_RS08560 0.60 -0.8 290,806 + HMPREF1078_RS08560 0.60 -0.2 290,806 + HMPREF1078_RS08560 0.60 -0.7 290,806 + HMPREF1078_RS08560 0.60 +1.8 290,807 - HMPREF1078_RS08560 0.60 -0.7 290,807 - HMPREF1078_RS08560 0.60 +0.7 290,807 - HMPREF1078_RS08560 0.60 +0.7 290,832 + HMPREF1078_RS08560 0.62 -1.5 290,843 - HMPREF1078_RS08560 0.63 +0.8 290,876 + HMPREF1078_RS08560 0.65 -1.3 290,895 - HMPREF1078_RS08560 0.67 -1.2 290,896 + HMPREF1078_RS08560 0.67 +1.1 290,896 + HMPREF1078_RS08560 0.67 -0.5 290,896 + HMPREF1078_RS08560 0.67 -0.2 290,897 - HMPREF1078_RS08560 0.67 -0.2 290,897 - HMPREF1078_RS08560 0.67 +0.1 290,897 - HMPREF1078_RS08560 0.67 +1.1 290,897 - HMPREF1078_RS08560 0.67 +2.1
Or see this region's nucleotide sequence