Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08190 and HMPREF1078_RS08195 are separated by 65 nucleotides HMPREF1078_RS08195 and HMPREF1078_RS08200 are separated by 85 nucleotides HMPREF1078_RS08200 and HMPREF1078_RS08205 are separated by 67 nucleotides
HMPREF1078_RS08190: HMPREF1078_RS08190 - 6-phosphofructokinase, at 209,106 to 210,089
_RS08190
HMPREF1078_RS08195: HMPREF1078_RS08195 - RNA polymerase sigma factor, at 210,155 to 210,610
_RS08195
HMPREF1078_RS08200: HMPREF1078_RS08200 - Hsp20/alpha crystallin family protein, at 210,696 to 211,124
_RS08200
HMPREF1078_RS08205: HMPREF1078_RS08205 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 211,192 to 211,941
_RS08205
Position (kb) 210
211 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 209.214 kb on + strand, within HMPREF1078_RS08190 at 209.215 kb on - strand, within HMPREF1078_RS08190 at 209.219 kb on + strand, within HMPREF1078_RS08190 at 209.220 kb on - strand, within HMPREF1078_RS08190 at 209.220 kb on - strand, within HMPREF1078_RS08190 at 209.220 kb on - strand, within HMPREF1078_RS08190 at 209.282 kb on + strand, within HMPREF1078_RS08190 at 209.282 kb on + strand, within HMPREF1078_RS08190 at 209.282 kb on + strand, within HMPREF1078_RS08190 at 209.282 kb on + strand, within HMPREF1078_RS08190 at 209.283 kb on - strand, within HMPREF1078_RS08190 at 209.283 kb on - strand, within HMPREF1078_RS08190 at 209.283 kb on - strand, within HMPREF1078_RS08190 at 209.383 kb on + strand, within HMPREF1078_RS08190 at 209.384 kb on - strand, within HMPREF1078_RS08190 at 209.384 kb on - strand, within HMPREF1078_RS08190 at 209.384 kb on - strand, within HMPREF1078_RS08190 at 209.384 kb on - strand, within HMPREF1078_RS08190 at 209.385 kb on + strand, within HMPREF1078_RS08190 at 209.385 kb on + strand, within HMPREF1078_RS08190 at 209.386 kb on - strand, within HMPREF1078_RS08190 at 209.386 kb on - strand, within HMPREF1078_RS08190 at 209.427 kb on + strand, within HMPREF1078_RS08190 at 209.595 kb on - strand, within HMPREF1078_RS08190 at 209.627 kb on + strand, within HMPREF1078_RS08190 at 209.666 kb on - strand, within HMPREF1078_RS08190 at 209.676 kb on - strand, within HMPREF1078_RS08190 at 209.689 kb on + strand, within HMPREF1078_RS08190 at 209.691 kb on + strand, within HMPREF1078_RS08190 at 209.691 kb on + strand, within HMPREF1078_RS08190 at 209.691 kb on + strand, within HMPREF1078_RS08190 at 209.691 kb on + strand, within HMPREF1078_RS08190 at 209.722 kb on - strand, within HMPREF1078_RS08190 at 209.738 kb on - strand, within HMPREF1078_RS08190 at 209.825 kb on + strand, within HMPREF1078_RS08190 at 209.826 kb on - strand, within HMPREF1078_RS08190 at 209.826 kb on - strand, within HMPREF1078_RS08190 at 209.909 kb on + strand, within HMPREF1078_RS08190 at 209.910 kb on - strand, within HMPREF1078_RS08190 at 209.910 kb on - strand, within HMPREF1078_RS08190 at 209.913 kb on + strand, within HMPREF1078_RS08190 at 209.914 kb on - strand, within HMPREF1078_RS08190 at 209.914 kb on - strand, within HMPREF1078_RS08190 at 209.971 kb on + strand, within HMPREF1078_RS08190 at 209.972 kb on - strand, within HMPREF1078_RS08190 at 209.987 kb on + strand, within HMPREF1078_RS08190 at 210.074 kb on + strand at 210.077 kb on - strand at 210.102 kb on - strand at 210.158 kb on + strand at 210.180 kb on + strand at 210.250 kb on - strand, within HMPREF1078_RS08195 at 210.259 kb on + strand, within HMPREF1078_RS08195 at 210.260 kb on - strand, within HMPREF1078_RS08195 at 210.348 kb on + strand, within HMPREF1078_RS08195 at 210.365 kb on + strand, within HMPREF1078_RS08195 at 210.366 kb on - strand, within HMPREF1078_RS08195 at 210.366 kb on - strand, within HMPREF1078_RS08195 at 210.371 kb on + strand, within HMPREF1078_RS08195 at 210.371 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.432 kb on + strand, within HMPREF1078_RS08195 at 210.433 kb on - strand, within HMPREF1078_RS08195 at 210.433 kb on - strand, within HMPREF1078_RS08195 at 210.469 kb on + strand, within HMPREF1078_RS08195 at 210.469 kb on + strand, within HMPREF1078_RS08195 at 210.476 kb on - strand, within HMPREF1078_RS08195 at 210.479 kb on - strand, within HMPREF1078_RS08195 at 210.481 kb on - strand, within HMPREF1078_RS08195 at 210.547 kb on - strand, within HMPREF1078_RS08195 at 210.547 kb on - strand, within HMPREF1078_RS08195 at 210.611 kb on + strand at 210.611 kb on + strand at 210.612 kb on - strand at 210.617 kb on + strand at 210.660 kb on + strand at 210.660 kb on + strand at 210.692 kb on + strand at 210.692 kb on + strand at 210.693 kb on - strand at 210.693 kb on - strand at 210.737 kb on + strand at 210.738 kb on - strand at 210.827 kb on + strand, within HMPREF1078_RS08200 at 210.828 kb on - strand, within HMPREF1078_RS08200 at 210.948 kb on + strand, within HMPREF1078_RS08200 at 210.949 kb on - strand, within HMPREF1078_RS08200 at 210.990 kb on + strand, within HMPREF1078_RS08200 at 210.991 kb on - strand, within HMPREF1078_RS08200 at 210.997 kb on + strand, within HMPREF1078_RS08200 at 210.997 kb on + strand, within HMPREF1078_RS08200 at 210.998 kb on - strand, within HMPREF1078_RS08200 at 210.998 kb on - strand, within HMPREF1078_RS08200 at 211.140 kb on - strand at 211.149 kb on + strand at 211.149 kb on + strand at 211.262 kb on + strand at 211.263 kb on - strand at 211.265 kb on + strand at 211.307 kb on + strand, within HMPREF1078_RS08205 at 211.307 kb on + strand, within HMPREF1078_RS08205 at 211.308 kb on - strand, within HMPREF1078_RS08205 at 211.308 kb on - strand, within HMPREF1078_RS08205 at 211.477 kb on - strand, within HMPREF1078_RS08205 at 211.479 kb on + strand, within HMPREF1078_RS08205 at 211.479 kb on + strand, within HMPREF1078_RS08205 at 211.593 kb on - strand, within HMPREF1078_RS08205 at 211.593 kb on - strand, within HMPREF1078_RS08205
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 209,214 + HMPREF1078_RS08190 0.11 -2.5 209,215 - HMPREF1078_RS08190 0.11 -0.6 209,219 + HMPREF1078_RS08190 0.11 -0.5 209,220 - HMPREF1078_RS08190 0.12 -1.3 209,220 - HMPREF1078_RS08190 0.12 -0.3 209,220 - HMPREF1078_RS08190 0.12 +0.5 209,282 + HMPREF1078_RS08190 0.18 -0.7 209,282 + HMPREF1078_RS08190 0.18 -0.3 209,282 + HMPREF1078_RS08190 0.18 -1.6 209,282 + HMPREF1078_RS08190 0.18 -0.8 209,283 - HMPREF1078_RS08190 0.18 +0.4 209,283 - HMPREF1078_RS08190 0.18 +1.3 209,283 - HMPREF1078_RS08190 0.18 -1.5 209,383 + HMPREF1078_RS08190 0.28 +0.6 209,384 - HMPREF1078_RS08190 0.28 -0.3 209,384 - HMPREF1078_RS08190 0.28 +1.3 209,384 - HMPREF1078_RS08190 0.28 +1.1 209,384 - HMPREF1078_RS08190 0.28 +1.1 209,385 + HMPREF1078_RS08190 0.28 -0.6 209,385 + HMPREF1078_RS08190 0.28 +0.6 209,386 - HMPREF1078_RS08190 0.28 -1.7 209,386 - HMPREF1078_RS08190 0.28 -0.0 209,427 + HMPREF1078_RS08190 0.33 +0.1 209,595 - HMPREF1078_RS08190 0.50 +0.1 209,627 + HMPREF1078_RS08190 0.53 +0.2 209,666 - HMPREF1078_RS08190 0.57 +0.1 209,676 - HMPREF1078_RS08190 0.58 +0.2 209,689 + HMPREF1078_RS08190 0.59 +1.1 209,691 + HMPREF1078_RS08190 0.59 -1.6 209,691 + HMPREF1078_RS08190 0.59 -0.7 209,691 + HMPREF1078_RS08190 0.59 +0.5 209,691 + HMPREF1078_RS08190 0.59 +1.2 209,722 - HMPREF1078_RS08190 0.63 +0.2 209,738 - HMPREF1078_RS08190 0.64 -0.9 209,825 + HMPREF1078_RS08190 0.73 +0.1 209,826 - HMPREF1078_RS08190 0.73 -0.8 209,826 - HMPREF1078_RS08190 0.73 -1.3 209,909 + HMPREF1078_RS08190 0.82 +0.6 209,910 - HMPREF1078_RS08190 0.82 +0.1 209,910 - HMPREF1078_RS08190 0.82 +1.1 209,913 + HMPREF1078_RS08190 0.82 -1.0 209,914 - HMPREF1078_RS08190 0.82 -0.2 209,914 - HMPREF1078_RS08190 0.82 +0.0 209,971 + HMPREF1078_RS08190 0.88 +0.4 209,972 - HMPREF1078_RS08190 0.88 -1.0 209,987 + HMPREF1078_RS08190 0.90 +1.4 210,074 + +0.4 210,077 - -1.8 210,102 - -1.4 210,158 + +0.1 210,180 + +0.4 210,250 - HMPREF1078_RS08195 0.21 +1.7 210,259 + HMPREF1078_RS08195 0.23 -0.1 210,260 - HMPREF1078_RS08195 0.23 +1.0 210,348 + HMPREF1078_RS08195 0.42 +0.3 210,365 + HMPREF1078_RS08195 0.46 +1.2 210,366 - HMPREF1078_RS08195 0.46 -0.9 210,366 - HMPREF1078_RS08195 0.46 -1.6 210,371 + HMPREF1078_RS08195 0.47 -1.0 210,371 + HMPREF1078_RS08195 0.47 +1.1 210,432 + HMPREF1078_RS08195 0.61 -0.3 210,432 + HMPREF1078_RS08195 0.61 -1.9 210,432 + HMPREF1078_RS08195 0.61 -1.9 210,432 + HMPREF1078_RS08195 0.61 -1.9 210,433 - HMPREF1078_RS08195 0.61 -1.0 210,433 - HMPREF1078_RS08195 0.61 -1.6 210,469 + HMPREF1078_RS08195 0.69 -0.9 210,469 + HMPREF1078_RS08195 0.69 +0.3 210,476 - HMPREF1078_RS08195 0.70 +0.4 210,479 - HMPREF1078_RS08195 0.71 -0.9 210,481 - HMPREF1078_RS08195 0.71 -2.3 210,547 - HMPREF1078_RS08195 0.86 +0.3 210,547 - HMPREF1078_RS08195 0.86 -0.3 210,611 + -0.4 210,611 + +0.1 210,612 - +0.3 210,617 + -1.6 210,660 + -1.1 210,660 + -0.0 210,692 + +1.1 210,692 + +0.1 210,693 - +0.8 210,693 - +0.3 210,737 + -0.6 210,738 - -0.1 210,827 + HMPREF1078_RS08200 0.31 -0.4 210,828 - HMPREF1078_RS08200 0.31 -0.2 210,948 + HMPREF1078_RS08200 0.59 +0.4 210,949 - HMPREF1078_RS08200 0.59 +3.0 210,990 + HMPREF1078_RS08200 0.69 +0.1 210,991 - HMPREF1078_RS08200 0.69 +0.1 210,997 + HMPREF1078_RS08200 0.70 +0.3 210,997 + HMPREF1078_RS08200 0.70 -0.7 210,998 - HMPREF1078_RS08200 0.70 -0.2 210,998 - HMPREF1078_RS08200 0.70 +0.7 211,140 - -0.1 211,149 + -0.6 211,149 + -0.0 211,262 + +0.3 211,263 - +2.4 211,265 + +1.4 211,307 + HMPREF1078_RS08205 0.15 -0.1 211,307 + HMPREF1078_RS08205 0.15 -0.6 211,308 - HMPREF1078_RS08205 0.15 +0.7 211,308 - HMPREF1078_RS08205 0.15 -0.2 211,477 - HMPREF1078_RS08205 0.38 +0.3 211,479 + HMPREF1078_RS08205 0.38 +0.9 211,479 + HMPREF1078_RS08205 0.38 +0.7 211,593 - HMPREF1078_RS08205 0.53 -1.6 211,593 - HMPREF1078_RS08205 0.53 +0.9
Or see this region's nucleotide sequence