Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07780

Experiment: marine_broth_2216 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS07770 and HMPREF1078_RS07775 are separated by 96 nucleotidesHMPREF1078_RS07775 and HMPREF1078_RS07780 are separated by 3 nucleotidesHMPREF1078_RS07780 and HMPREF1078_RS07785 are separated by 141 nucleotides HMPREF1078_RS07770: HMPREF1078_RS07770 - GH92 family glycosyl hydrolase, at 98,411 to 100,633 _RS07770 HMPREF1078_RS07775: HMPREF1078_RS07775 - twin-arginine translocase subunit TatC, at 100,730 to 101,605 _RS07775 HMPREF1078_RS07780: HMPREF1078_RS07780 - twin-arginine translocase TatA/TatE family subunit, at 101,609 to 101,803 _RS07780 HMPREF1078_RS07785: HMPREF1078_RS07785 - ACP S-malonyltransferase, at 101,945 to 102,826 _RS07785 Position (kb) 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 100.617 kb on - strandat 100.622 kb on + strandat 100.624 kb on + strandat 100.624 kb on + strandat 100.624 kb on + strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.643 kb on - strandat 100.678 kb on + strandat 100.678 kb on + strandat 100.678 kb on + strandat 100.679 kb on - strandat 100.684 kb on - strandat 100.692 kb on + strandat 100.703 kb on + strandat 100.704 kb on - strandat 100.704 kb on - strandat 100.706 kb on - strandat 100.709 kb on + strandat 100.714 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.754 kb on - strandat 100.754 kb on - strandat 100.754 kb on - strandat 100.841 kb on + strand, within HMPREF1078_RS07775at 100.842 kb on - strand, within HMPREF1078_RS07775at 100.842 kb on - strand, within HMPREF1078_RS07775at 100.867 kb on + strand, within HMPREF1078_RS07775at 100.879 kb on + strand, within HMPREF1078_RS07775at 100.880 kb on - strand, within HMPREF1078_RS07775at 100.880 kb on - strand, within HMPREF1078_RS07775at 100.923 kb on + strand, within HMPREF1078_RS07775at 101.030 kb on - strand, within HMPREF1078_RS07775at 101.036 kb on - strand, within HMPREF1078_RS07775at 101.037 kb on + strand, within HMPREF1078_RS07775at 101.037 kb on + strand, within HMPREF1078_RS07775at 101.038 kb on - strand, within HMPREF1078_RS07775at 101.038 kb on - strand, within HMPREF1078_RS07775at 101.063 kb on + strand, within HMPREF1078_RS07775at 101.065 kb on + strand, within HMPREF1078_RS07775at 101.066 kb on - strand, within HMPREF1078_RS07775at 101.066 kb on - strand, within HMPREF1078_RS07775at 101.082 kb on + strand, within HMPREF1078_RS07775at 101.082 kb on + strand, within HMPREF1078_RS07775at 101.115 kb on - strand, within HMPREF1078_RS07775at 101.115 kb on - strand, within HMPREF1078_RS07775at 101.119 kb on + strand, within HMPREF1078_RS07775at 101.119 kb on + strand, within HMPREF1078_RS07775at 101.120 kb on - strand, within HMPREF1078_RS07775at 101.203 kb on - strand, within HMPREF1078_RS07775at 101.255 kb on - strand, within HMPREF1078_RS07775at 101.422 kb on - strand, within HMPREF1078_RS07775at 101.422 kb on - strand, within HMPREF1078_RS07775at 101.453 kb on + strand, within HMPREF1078_RS07775at 101.454 kb on - strand, within HMPREF1078_RS07775at 101.454 kb on - strand, within HMPREF1078_RS07775at 101.457 kb on - strand, within HMPREF1078_RS07775at 101.457 kb on - strand, within HMPREF1078_RS07775at 101.469 kb on - strand, within HMPREF1078_RS07775at 101.470 kb on + strand, within HMPREF1078_RS07775at 101.470 kb on + strand, within HMPREF1078_RS07775at 101.471 kb on - strand, within HMPREF1078_RS07775at 101.488 kb on + strand, within HMPREF1078_RS07775at 101.488 kb on + strand, within HMPREF1078_RS07775at 101.516 kb on - strand, within HMPREF1078_RS07775at 101.630 kb on + strand, within HMPREF1078_RS07780at 101.635 kb on + strand, within HMPREF1078_RS07780at 101.692 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.759 kb on - strand, within HMPREF1078_RS07780at 101.806 kb on + strandat 101.806 kb on + strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.813 kb on + strandat 101.826 kb on - strandat 101.854 kb on + strandat 101.863 kb on + strandat 101.870 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
remove
100,617 - -0.5
100,622 + -0.9
100,624 + -0.8
100,624 + +0.9
100,624 + -0.6
100,625 - -0.7
100,625 - +0.6
100,625 - +0.8
100,625 - +1.1
100,625 - +0.8
100,643 - -0.2
100,678 + +0.4
100,678 + +0.8
100,678 + +1.6
100,679 - -0.2
100,684 - -2.1
100,692 + +0.8
100,703 + +1.2
100,704 - -2.1
100,704 - +1.1
100,706 - +0.2
100,709 + -0.2
100,714 + +1.9
100,753 + -0.2
100,753 + -1.8
100,753 + -0.4
100,753 + -1.0
100,753 + -0.0
100,754 - -0.1
100,754 - -0.8
100,754 - +0.5
100,841 + HMPREF1078_RS07775 0.13 -1.1
100,842 - HMPREF1078_RS07775 0.13 -1.3
100,842 - HMPREF1078_RS07775 0.13 -0.6
100,867 + HMPREF1078_RS07775 0.16 -1.1
100,879 + HMPREF1078_RS07775 0.17 -1.4
100,880 - HMPREF1078_RS07775 0.17 -1.7
100,880 - HMPREF1078_RS07775 0.17 -1.3
100,923 + HMPREF1078_RS07775 0.22 -2.9
101,030 - HMPREF1078_RS07775 0.34 -1.1
101,036 - HMPREF1078_RS07775 0.35 -0.1
101,037 + HMPREF1078_RS07775 0.35 -1.6
101,037 + HMPREF1078_RS07775 0.35 -0.2
101,038 - HMPREF1078_RS07775 0.35 -1.8
101,038 - HMPREF1078_RS07775 0.35 +0.1
101,063 + HMPREF1078_RS07775 0.38 +0.4
101,065 + HMPREF1078_RS07775 0.38 +1.1
101,066 - HMPREF1078_RS07775 0.38 -0.4
101,066 - HMPREF1078_RS07775 0.38 -0.4
101,082 + HMPREF1078_RS07775 0.40 +0.1
101,082 + HMPREF1078_RS07775 0.40 -0.8
101,115 - HMPREF1078_RS07775 0.44 -1.5
101,115 - HMPREF1078_RS07775 0.44 -1.6
101,119 + HMPREF1078_RS07775 0.44 -2.7
101,119 + HMPREF1078_RS07775 0.44 -2.1
101,120 - HMPREF1078_RS07775 0.45 -0.6
101,203 - HMPREF1078_RS07775 0.54 -0.5
101,255 - HMPREF1078_RS07775 0.60 -2.2
101,422 - HMPREF1078_RS07775 0.79 -0.8
101,422 - HMPREF1078_RS07775 0.79 -1.7
101,453 + HMPREF1078_RS07775 0.83 +0.8
101,454 - HMPREF1078_RS07775 0.83 +0.8
101,454 - HMPREF1078_RS07775 0.83 -1.3
101,457 - HMPREF1078_RS07775 0.83 -0.8
101,457 - HMPREF1078_RS07775 0.83 -1.8
101,469 - HMPREF1078_RS07775 0.84 -2.1
101,470 + HMPREF1078_RS07775 0.84 -0.1
101,470 + HMPREF1078_RS07775 0.84 -0.6
101,471 - HMPREF1078_RS07775 0.85 -2.3
101,488 + HMPREF1078_RS07775 0.87 -3.1
101,488 + HMPREF1078_RS07775 0.87 -0.4
101,516 - HMPREF1078_RS07775 0.90 +1.0
101,630 + HMPREF1078_RS07780 0.11 -1.6
101,635 + HMPREF1078_RS07780 0.13 -0.4
101,692 + HMPREF1078_RS07780 0.43 -2.5
101,758 + HMPREF1078_RS07780 0.76 -2.0
101,758 + HMPREF1078_RS07780 0.76 -0.6
101,758 + HMPREF1078_RS07780 0.76 -2.8
101,759 - HMPREF1078_RS07780 0.77 -1.2
101,806 + +2.1
101,806 + -0.9
101,811 + -0.6
101,811 + -1.3
101,813 + +0.8
101,826 - +0.1
101,854 + -0.6
101,863 + -2.0
101,870 + -0.4

Or see this region's nucleotide sequence