Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07745 and HMPREF1078_RS07750 are separated by 91 nucleotides HMPREF1078_RS07750 and HMPREF1078_RS07755 are separated by 26 nucleotides HMPREF1078_RS07755 and HMPREF1078_RS07760 are separated by 66 nucleotides HMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides
HMPREF1078_RS07745: HMPREF1078_RS07745 - DUF4293 domain-containing protein, at 94,268 to 94,729
_RS07745
HMPREF1078_RS07750: HMPREF1078_RS07750 - DNA-directed RNA polymerase subunit omega, at 94,821 to 95,153
_RS07750
HMPREF1078_RS07755: HMPREF1078_RS07755 - outer membrane protein assembly factor BamD, at 95,180 to 95,989
_RS07755
HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481
_RS07760
HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880
_RS07765
Position (kb) 95
96 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.181 kb on + strand at 94.182 kb on - strand at 94.182 kb on - strand at 94.182 kb on - strand at 94.182 kb on - strand at 94.182 kb on - strand at 94.184 kb on - strand at 94.184 kb on - strand at 94.184 kb on - strand at 94.184 kb on - strand at 94.184 kb on - strand at 94.190 kb on + strand at 94.191 kb on - strand at 94.239 kb on - strand at 94.252 kb on - strand at 94.253 kb on + strand at 94.270 kb on - strand at 94.733 kb on - strand at 94.780 kb on - strand at 94.819 kb on - strand at 94.854 kb on - strand at 94.859 kb on - strand, within HMPREF1078_RS07750 at 94.866 kb on - strand, within HMPREF1078_RS07750 at 95.185 kb on - strand at 95.185 kb on - strand at 95.185 kb on - strand at 95.189 kb on - strand at 95.189 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.238 kb on - strand at 95.238 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.344 kb on - strand, within HMPREF1078_RS07755 at 96.032 kb on - strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.065 kb on - strand at 96.065 kb on - strand at 96.067 kb on - strand at 96.068 kb on + strand at 96.180 kb on + strand, within HMPREF1078_RS07760 at 96.181 kb on - strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.187 kb on - strand, within HMPREF1078_RS07760 at 96.212 kb on - strand, within HMPREF1078_RS07760 at 96.396 kb on - strand, within HMPREF1078_RS07760 at 96.446 kb on - strand at 96.460 kb on + strand at 96.465 kb on - strand at 96.473 kb on - strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.477 kb on - strand at 96.477 kb on - strand at 96.501 kb on - strand at 96.503 kb on - strand at 96.515 kb on - strand at 96.528 kb on + strand at 96.657 kb on + strand at 96.658 kb on - strand at 96.658 kb on - strand at 96.678 kb on + strand at 96.678 kb on + strand at 96.689 kb on + strand at 96.690 kb on - strand at 96.762 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.888 kb on - strand, within HMPREF1078_RS07765 at 96.896 kb on + strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.905 kb on + strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.956 kb on + strand, within HMPREF1078_RS07765 at 96.957 kb on - strand, within HMPREF1078_RS07765 at 96.961 kb on + strand, within HMPREF1078_RS07765
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 94,181 + +1.2 94,182 - +0.6 94,182 - -0.1 94,182 - +1.2 94,182 - -0.4 94,182 - +0.1 94,184 - -0.4 94,184 - +0.1 94,184 - -1.5 94,184 - -0.4 94,184 - -1.8 94,190 + -0.6 94,191 - -0.7 94,239 - +0.1 94,252 - -0.3 94,253 + -0.3 94,270 - +0.1 94,733 - -1.7 94,780 - -0.8 94,819 - +0.4 94,854 - -0.2 94,859 - HMPREF1078_RS07750 0.11 +0.6 94,866 - HMPREF1078_RS07750 0.14 -1.2 95,185 - -0.9 95,185 - -0.6 95,185 - +0.2 95,189 - -1.8 95,189 - +0.4 95,212 - -1.2 95,212 - +0.4 95,212 - -0.1 95,212 - -0.0 95,238 - -0.2 95,238 - -1.0 95,242 - -1.0 95,242 - -0.1 95,242 - -0.1 95,269 - HMPREF1078_RS07755 0.11 -1.3 95,269 - HMPREF1078_RS07755 0.11 -0.0 95,269 - HMPREF1078_RS07755 0.11 -1.6 95,269 - HMPREF1078_RS07755 0.11 -1.5 95,275 - HMPREF1078_RS07755 0.12 -1.0 95,275 - HMPREF1078_RS07755 0.12 -1.4 95,344 - HMPREF1078_RS07755 0.20 +0.1 96,032 - +0.1 96,064 + -1.0 96,064 + -0.8 96,064 + +0.1 96,065 - +0.1 96,065 - -1.6 96,067 - -0.9 96,068 + +0.9 96,180 + HMPREF1078_RS07760 0.29 -0.3 96,181 - HMPREF1078_RS07760 0.29 +1.0 96,184 + HMPREF1078_RS07760 0.30 +0.3 96,184 + HMPREF1078_RS07760 0.30 +0.8 96,184 + HMPREF1078_RS07760 0.30 +0.8 96,185 - HMPREF1078_RS07760 0.30 +0.3 96,185 - HMPREF1078_RS07760 0.30 +0.8 96,187 - HMPREF1078_RS07760 0.31 +1.3 96,212 - HMPREF1078_RS07760 0.37 -1.2 96,396 - HMPREF1078_RS07760 0.80 -2.3 96,446 - +0.2 96,460 + -1.1 96,465 - +0.2 96,473 - -1.4 96,476 + +0.2 96,476 + +2.4 96,477 - +0.6 96,477 - +0.4 96,501 - +1.1 96,503 - -1.1 96,515 - +0.6 96,528 + -1.3 96,657 + -2.5 96,658 - +1.0 96,658 - +1.2 96,678 + +0.9 96,678 + +0.3 96,689 + +0.1 96,690 - +0.3 96,762 + HMPREF1078_RS07765 0.14 -0.3 96,870 + HMPREF1078_RS07765 0.22 -0.5 96,870 + HMPREF1078_RS07765 0.22 +1.9 96,871 - HMPREF1078_RS07765 0.22 +0.9 96,871 - HMPREF1078_RS07765 0.22 -1.1 96,871 - HMPREF1078_RS07765 0.22 -0.4 96,888 - HMPREF1078_RS07765 0.24 +0.6 96,896 + HMPREF1078_RS07765 0.24 -0.3 96,897 - HMPREF1078_RS07765 0.24 -0.5 96,897 - HMPREF1078_RS07765 0.24 +0.2 96,905 + HMPREF1078_RS07765 0.25 +0.0 96,939 - HMPREF1078_RS07765 0.28 -0.7 96,939 - HMPREF1078_RS07765 0.28 -0.1 96,939 - HMPREF1078_RS07765 0.28 -2.1 96,956 + HMPREF1078_RS07765 0.29 +0.0 96,957 - HMPREF1078_RS07765 0.29 +1.4 96,961 + HMPREF1078_RS07765 0.29 +0.2
Or see this region's nucleotide sequence