Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06975 and HMPREF1078_RS06980 are separated by 70 nucleotides HMPREF1078_RS06980 and HMPREF1078_RS06985 are separated by 145 nucleotides HMPREF1078_RS06985 and HMPREF1078_RS06990 are separated by 187 nucleotides HMPREF1078_RS06990 and HMPREF1078_RS06995 are separated by 96 nucleotides
HMPREF1078_RS06975: HMPREF1078_RS06975 - ABC transporter ATP-binding protein, at 803,808 to 804,476
_RS06975
HMPREF1078_RS06980: HMPREF1078_RS06980 - tRNA threonylcarbamoyladenosine dehydratase, at 804,547 to 805,272
_RS06980
HMPREF1078_RS06985: HMPREF1078_RS06985 - family 20 glycosylhydrolase, at 805,418 to 807,391
_RS06985
HMPREF1078_RS06990: HMPREF1078_RS06990 - hypothetical protein, at 807,579 to 807,905
_RS06990
HMPREF1078_RS06995: HMPREF1078_RS06995 - FAD-dependent oxidoreductase, at 808,002 to 809,864
_RS06995
Position (kb) 805
806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2 at 804.535 kb on - strand at 804.535 kb on - strand at 804.574 kb on - strand at 804.574 kb on - strand at 804.579 kb on - strand at 804.587 kb on - strand at 804.587 kb on - strand at 804.591 kb on - strand at 804.613 kb on - strand at 805.013 kb on - strand, within HMPREF1078_RS06980 at 805.087 kb on - strand, within HMPREF1078_RS06980 at 805.148 kb on - strand, within HMPREF1078_RS06980 at 805.181 kb on - strand, within HMPREF1078_RS06980 at 805.181 kb on - strand, within HMPREF1078_RS06980 at 805.181 kb on - strand, within HMPREF1078_RS06980 at 805.204 kb on - strand at 805.375 kb on - strand at 805.417 kb on + strand at 805.426 kb on - strand at 805.426 kb on - strand at 805.426 kb on - strand at 805.434 kb on - strand at 805.489 kb on + strand at 805.561 kb on + strand at 805.578 kb on - strand at 805.578 kb on - strand at 805.599 kb on + strand at 805.631 kb on + strand, within HMPREF1078_RS06985 at 805.632 kb on - strand, within HMPREF1078_RS06985 at 805.632 kb on - strand, within HMPREF1078_RS06985 at 805.793 kb on + strand, within HMPREF1078_RS06985 at 805.794 kb on - strand, within HMPREF1078_RS06985 at 805.880 kb on + strand, within HMPREF1078_RS06985 at 805.938 kb on + strand, within HMPREF1078_RS06985 at 805.939 kb on - strand, within HMPREF1078_RS06985 at 805.946 kb on + strand, within HMPREF1078_RS06985 at 805.946 kb on + strand, within HMPREF1078_RS06985 at 805.965 kb on - strand, within HMPREF1078_RS06985 at 805.968 kb on - strand, within HMPREF1078_RS06985 at 805.969 kb on + strand, within HMPREF1078_RS06985 at 805.970 kb on - strand, within HMPREF1078_RS06985 at 806.018 kb on + strand, within HMPREF1078_RS06985 at 806.018 kb on + strand, within HMPREF1078_RS06985 at 806.019 kb on - strand, within HMPREF1078_RS06985 at 806.021 kb on + strand, within HMPREF1078_RS06985 at 806.045 kb on + strand, within HMPREF1078_RS06985 at 806.046 kb on - strand, within HMPREF1078_RS06985 at 806.102 kb on + strand, within HMPREF1078_RS06985 at 806.107 kb on + strand, within HMPREF1078_RS06985 at 806.204 kb on - strand, within HMPREF1078_RS06985 at 806.237 kb on + strand, within HMPREF1078_RS06985 at 806.238 kb on - strand, within HMPREF1078_RS06985 at 806.276 kb on + strand, within HMPREF1078_RS06985 at 806.276 kb on + strand, within HMPREF1078_RS06985 at 806.306 kb on + strand, within HMPREF1078_RS06985 at 806.320 kb on + strand, within HMPREF1078_RS06985 at 806.332 kb on + strand, within HMPREF1078_RS06985 at 806.422 kb on + strand, within HMPREF1078_RS06985 at 806.422 kb on + strand, within HMPREF1078_RS06985 at 806.499 kb on + strand, within HMPREF1078_RS06985 at 806.531 kb on + strand, within HMPREF1078_RS06985 at 806.531 kb on + strand, within HMPREF1078_RS06985 at 806.533 kb on + strand, within HMPREF1078_RS06985 at 806.573 kb on + strand, within HMPREF1078_RS06985 at 806.574 kb on - strand, within HMPREF1078_RS06985 at 806.584 kb on + strand, within HMPREF1078_RS06985 at 806.584 kb on + strand, within HMPREF1078_RS06985 at 806.607 kb on - strand, within HMPREF1078_RS06985 at 806.607 kb on - strand, within HMPREF1078_RS06985 at 806.607 kb on - strand, within HMPREF1078_RS06985 at 806.608 kb on + strand, within HMPREF1078_RS06985 at 806.627 kb on + strand, within HMPREF1078_RS06985 at 806.634 kb on - strand, within HMPREF1078_RS06985 at 806.685 kb on + strand, within HMPREF1078_RS06985 at 806.685 kb on + strand, within HMPREF1078_RS06985 at 806.731 kb on + strand, within HMPREF1078_RS06985 at 806.848 kb on + strand, within HMPREF1078_RS06985 at 806.849 kb on - strand, within HMPREF1078_RS06985 at 806.859 kb on - strand, within HMPREF1078_RS06985 at 806.923 kb on + strand, within HMPREF1078_RS06985 at 807.086 kb on + strand, within HMPREF1078_RS06985 at 807.086 kb on + strand, within HMPREF1078_RS06985 at 807.086 kb on + strand, within HMPREF1078_RS06985 at 807.135 kb on - strand, within HMPREF1078_RS06985 at 807.143 kb on - strand, within HMPREF1078_RS06985 at 807.219 kb on - strand at 807.230 kb on - strand at 807.264 kb on - strand at 807.309 kb on + strand at 807.389 kb on + strand at 807.390 kb on - strand at 807.390 kb on - strand at 807.390 kb on - strand at 807.390 kb on - strand at 807.418 kb on - strand at 807.539 kb on + strand at 807.539 kb on + strand at 807.539 kb on + strand at 807.560 kb on - strand at 807.595 kb on + strand at 807.632 kb on - strand, within HMPREF1078_RS06990 at 807.670 kb on + strand, within HMPREF1078_RS06990 at 807.670 kb on + strand, within HMPREF1078_RS06990 at 807.673 kb on - strand, within HMPREF1078_RS06990 at 807.719 kb on + strand, within HMPREF1078_RS06990 at 807.771 kb on + strand, within HMPREF1078_RS06990 at 807.798 kb on + strand, within HMPREF1078_RS06990 at 807.798 kb on + strand, within HMPREF1078_RS06990 at 807.799 kb on - strand, within HMPREF1078_RS06990 at 807.800 kb on + strand, within HMPREF1078_RS06990 at 807.800 kb on + strand, within HMPREF1078_RS06990 at 807.800 kb on + strand, within HMPREF1078_RS06990 at 807.830 kb on + strand, within HMPREF1078_RS06990 at 807.845 kb on + strand, within HMPREF1078_RS06990 at 807.927 kb on - strand at 807.956 kb on - strand at 807.963 kb on + strand at 808.003 kb on + strand at 808.062 kb on + strand at 808.156 kb on + strand at 808.156 kb on + strand at 808.226 kb on + strand, within HMPREF1078_RS06995
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 804,535 - -0.7 804,535 - -0.9 804,574 - -1.0 804,574 - -0.9 804,579 - +0.0 804,587 - -0.8 804,587 - -0.6 804,591 - -1.2 804,613 - -1.6 805,013 - HMPREF1078_RS06980 0.64 +0.1 805,087 - HMPREF1078_RS06980 0.74 +1.7 805,148 - HMPREF1078_RS06980 0.83 -0.4 805,181 - HMPREF1078_RS06980 0.87 -0.5 805,181 - HMPREF1078_RS06980 0.87 +0.2 805,181 - HMPREF1078_RS06980 0.87 +1.0 805,204 - -1.5 805,375 - -0.4 805,417 + +0.0 805,426 - -0.6 805,426 - +0.2 805,426 - +1.4 805,434 - -0.9 805,489 + -0.4 805,561 + +1.0 805,578 - -0.5 805,578 - +1.2 805,599 + +2.3 805,631 + HMPREF1078_RS06985 0.11 +0.4 805,632 - HMPREF1078_RS06985 0.11 +0.8 805,632 - HMPREF1078_RS06985 0.11 -0.8 805,793 + HMPREF1078_RS06985 0.19 +0.6 805,794 - HMPREF1078_RS06985 0.19 -0.1 805,880 + HMPREF1078_RS06985 0.23 +1.9 805,938 + HMPREF1078_RS06985 0.26 +0.3 805,939 - HMPREF1078_RS06985 0.26 +2.5 805,946 + HMPREF1078_RS06985 0.27 -0.3 805,946 + HMPREF1078_RS06985 0.27 -0.0 805,965 - HMPREF1078_RS06985 0.28 +0.9 805,968 - HMPREF1078_RS06985 0.28 +2.5 805,969 + HMPREF1078_RS06985 0.28 +0.3 805,970 - HMPREF1078_RS06985 0.28 +0.3 806,018 + HMPREF1078_RS06985 0.30 -0.1 806,018 + HMPREF1078_RS06985 0.30 -0.5 806,019 - HMPREF1078_RS06985 0.30 -0.9 806,021 + HMPREF1078_RS06985 0.31 -0.8 806,045 + HMPREF1078_RS06985 0.32 +0.4 806,046 - HMPREF1078_RS06985 0.32 +0.5 806,102 + HMPREF1078_RS06985 0.35 +0.3 806,107 + HMPREF1078_RS06985 0.35 -1.3 806,204 - HMPREF1078_RS06985 0.40 +0.4 806,237 + HMPREF1078_RS06985 0.41 -0.8 806,238 - HMPREF1078_RS06985 0.42 +0.8 806,276 + HMPREF1078_RS06985 0.43 -2.5 806,276 + HMPREF1078_RS06985 0.43 +0.2 806,306 + HMPREF1078_RS06985 0.45 +0.2 806,320 + HMPREF1078_RS06985 0.46 -0.2 806,332 + HMPREF1078_RS06985 0.46 -0.1 806,422 + HMPREF1078_RS06985 0.51 -0.0 806,422 + HMPREF1078_RS06985 0.51 +0.4 806,499 + HMPREF1078_RS06985 0.55 +0.9 806,531 + HMPREF1078_RS06985 0.56 +0.5 806,531 + HMPREF1078_RS06985 0.56 +0.3 806,533 + HMPREF1078_RS06985 0.56 -0.7 806,573 + HMPREF1078_RS06985 0.59 -0.3 806,574 - HMPREF1078_RS06985 0.59 +0.4 806,584 + HMPREF1078_RS06985 0.59 +0.8 806,584 + HMPREF1078_RS06985 0.59 -0.0 806,607 - HMPREF1078_RS06985 0.60 +0.1 806,607 - HMPREF1078_RS06985 0.60 -0.5 806,607 - HMPREF1078_RS06985 0.60 +0.8 806,608 + HMPREF1078_RS06985 0.60 -0.5 806,627 + HMPREF1078_RS06985 0.61 -1.2 806,634 - HMPREF1078_RS06985 0.62 +0.7 806,685 + HMPREF1078_RS06985 0.64 -0.3 806,685 + HMPREF1078_RS06985 0.64 -0.2 806,731 + HMPREF1078_RS06985 0.67 -2.3 806,848 + HMPREF1078_RS06985 0.72 +0.1 806,849 - HMPREF1078_RS06985 0.72 +0.5 806,859 - HMPREF1078_RS06985 0.73 +0.4 806,923 + HMPREF1078_RS06985 0.76 +0.6 807,086 + HMPREF1078_RS06985 0.84 +0.9 807,086 + HMPREF1078_RS06985 0.84 -1.2 807,086 + HMPREF1078_RS06985 0.84 -0.1 807,135 - HMPREF1078_RS06985 0.87 -0.5 807,143 - HMPREF1078_RS06985 0.87 +0.1 807,219 - -0.3 807,230 - -0.0 807,264 - -0.0 807,309 + -0.8 807,389 + +0.4 807,390 - +1.0 807,390 - +0.2 807,390 - -2.0 807,390 - -0.6 807,418 - +0.9 807,539 + -0.5 807,539 + +0.4 807,539 + -0.2 807,560 - +1.7 807,595 + +0.6 807,632 - HMPREF1078_RS06990 0.16 +0.2 807,670 + HMPREF1078_RS06990 0.28 -0.8 807,670 + HMPREF1078_RS06990 0.28 +0.1 807,673 - HMPREF1078_RS06990 0.29 +0.0 807,719 + HMPREF1078_RS06990 0.43 +1.4 807,771 + HMPREF1078_RS06990 0.59 +1.0 807,798 + HMPREF1078_RS06990 0.67 -1.7 807,798 + HMPREF1078_RS06990 0.67 -1.5 807,799 - HMPREF1078_RS06990 0.67 +0.6 807,800 + HMPREF1078_RS06990 0.68 -1.7 807,800 + HMPREF1078_RS06990 0.68 -0.0 807,800 + HMPREF1078_RS06990 0.68 +0.4 807,830 + HMPREF1078_RS06990 0.77 +0.4 807,845 + HMPREF1078_RS06990 0.81 -1.3 807,927 - +0.5 807,956 - -0.8 807,963 + +0.9 808,003 + +0.2 808,062 + +0.5 808,156 + -0.4 808,156 + +0.5 808,226 + HMPREF1078_RS06995 0.12 +0.2
Or see this region's nucleotide sequence