Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06170 and HMPREF1078_RS06175 are separated by 34 nucleotides HMPREF1078_RS06175 and HMPREF1078_RS06180 are separated by 56 nucleotides HMPREF1078_RS06180 and HMPREF1078_RS06185 are separated by 88 nucleotides
HMPREF1078_RS06170: HMPREF1078_RS06170 - lipopolysaccharide biosynthesis protein, at 588,671 to 590,179
_RS06170
HMPREF1078_RS06175: HMPREF1078_RS06175 - Holliday junction branch migration DNA helicase RuvB, at 590,214 to 591,239
_RS06175
HMPREF1078_RS06180: HMPREF1078_RS06180 - outer membrane beta-barrel protein, at 591,296 to 591,904
_RS06180
HMPREF1078_RS06185: HMPREF1078_RS06185 - glycosyltransferase family 87 protein, at 591,993 to 593,180
_RS06185
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.221 kb on - strand at 590.221 kb on - strand at 590.265 kb on - strand at 590.267 kb on - strand at 590.267 kb on - strand at 590.267 kb on - strand at 590.427 kb on - strand, within HMPREF1078_RS06175 at 590.427 kb on - strand, within HMPREF1078_RS06175 at 590.442 kb on - strand, within HMPREF1078_RS06175 at 590.442 kb on - strand, within HMPREF1078_RS06175 at 590.693 kb on - strand, within HMPREF1078_RS06175 at 590.867 kb on - strand, within HMPREF1078_RS06175 at 591.016 kb on - strand, within HMPREF1078_RS06175 at 591.018 kb on - strand, within HMPREF1078_RS06175 at 591.018 kb on - strand, within HMPREF1078_RS06175 at 591.033 kb on - strand, within HMPREF1078_RS06175 at 591.220 kb on - strand at 591.220 kb on - strand at 591.222 kb on - strand at 591.222 kb on - strand at 591.270 kb on - strand at 591.270 kb on - strand at 591.319 kb on + strand at 591.355 kb on + strand at 591.356 kb on - strand at 591.357 kb on + strand, within HMPREF1078_RS06180 at 591.357 kb on + strand, within HMPREF1078_RS06180 at 591.374 kb on + strand, within HMPREF1078_RS06180 at 591.374 kb on + strand, within HMPREF1078_RS06180 at 591.375 kb on - strand, within HMPREF1078_RS06180 at 591.396 kb on + strand, within HMPREF1078_RS06180 at 591.396 kb on + strand, within HMPREF1078_RS06180 at 591.487 kb on + strand, within HMPREF1078_RS06180 at 591.487 kb on + strand, within HMPREF1078_RS06180 at 591.487 kb on + strand, within HMPREF1078_RS06180 at 591.491 kb on - strand, within HMPREF1078_RS06180 at 591.491 kb on - strand, within HMPREF1078_RS06180 at 591.491 kb on - strand, within HMPREF1078_RS06180 at 591.511 kb on + strand, within HMPREF1078_RS06180 at 591.512 kb on - strand, within HMPREF1078_RS06180 at 591.524 kb on + strand, within HMPREF1078_RS06180 at 591.525 kb on - strand, within HMPREF1078_RS06180 at 591.525 kb on - strand, within HMPREF1078_RS06180 at 591.530 kb on + strand, within HMPREF1078_RS06180 at 591.553 kb on + strand, within HMPREF1078_RS06180 at 591.555 kb on + strand, within HMPREF1078_RS06180 at 591.583 kb on - strand, within HMPREF1078_RS06180 at 591.606 kb on + strand, within HMPREF1078_RS06180 at 591.607 kb on - strand, within HMPREF1078_RS06180 at 591.666 kb on + strand, within HMPREF1078_RS06180 at 591.666 kb on + strand, within HMPREF1078_RS06180 at 591.668 kb on + strand, within HMPREF1078_RS06180 at 591.668 kb on + strand, within HMPREF1078_RS06180 at 591.669 kb on - strand, within HMPREF1078_RS06180 at 591.669 kb on - strand, within HMPREF1078_RS06180 at 591.669 kb on - strand, within HMPREF1078_RS06180 at 591.669 kb on - strand, within HMPREF1078_RS06180 at 591.671 kb on + strand, within HMPREF1078_RS06180 at 591.671 kb on + strand, within HMPREF1078_RS06180 at 591.752 kb on + strand, within HMPREF1078_RS06180 at 591.755 kb on - strand, within HMPREF1078_RS06180 at 591.755 kb on - strand, within HMPREF1078_RS06180 at 591.755 kb on - strand, within HMPREF1078_RS06180 at 591.755 kb on - strand, within HMPREF1078_RS06180 at 591.757 kb on + strand, within HMPREF1078_RS06180 at 591.758 kb on - strand, within HMPREF1078_RS06180 at 591.758 kb on - strand, within HMPREF1078_RS06180 at 591.793 kb on + strand, within HMPREF1078_RS06180 at 591.794 kb on - strand, within HMPREF1078_RS06180 at 591.794 kb on - strand, within HMPREF1078_RS06180 at 591.796 kb on - strand, within HMPREF1078_RS06180 at 591.818 kb on + strand, within HMPREF1078_RS06180 at 591.818 kb on + strand, within HMPREF1078_RS06180 at 591.818 kb on + strand, within HMPREF1078_RS06180 at 591.818 kb on + strand, within HMPREF1078_RS06180 at 591.818 kb on + strand, within HMPREF1078_RS06180 at 591.819 kb on - strand, within HMPREF1078_RS06180 at 591.819 kb on - strand, within HMPREF1078_RS06180 at 591.819 kb on - strand, within HMPREF1078_RS06180 at 591.819 kb on - strand, within HMPREF1078_RS06180 at 591.860 kb on + strand at 591.860 kb on + strand at 591.861 kb on - strand at 591.882 kb on - strand at 591.904 kb on + strand at 591.905 kb on - strand at 591.972 kb on + strand at 591.973 kb on - strand at 591.973 kb on - strand at 591.976 kb on - strand at 591.978 kb on + strand at 592.030 kb on + strand at 592.031 kb on - strand at 592.031 kb on - strand at 592.031 kb on - strand at 592.032 kb on - strand at 592.040 kb on + strand at 592.041 kb on - strand at 592.041 kb on - strand at 592.078 kb on + strand at 592.088 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.092 kb on - strand at 592.092 kb on - strand at 592.116 kb on + strand, within HMPREF1078_RS06185 at 592.124 kb on + strand, within HMPREF1078_RS06185 at 592.131 kb on + strand, within HMPREF1078_RS06185 at 592.132 kb on - strand, within HMPREF1078_RS06185 at 592.132 kb on - strand, within HMPREF1078_RS06185 at 592.132 kb on - strand, within HMPREF1078_RS06185 at 592.172 kb on + strand, within HMPREF1078_RS06185 at 592.174 kb on + strand, within HMPREF1078_RS06185 at 592.202 kb on + strand, within HMPREF1078_RS06185 at 592.202 kb on + strand, within HMPREF1078_RS06185 at 592.202 kb on + strand, within HMPREF1078_RS06185 at 592.205 kb on - strand, within HMPREF1078_RS06185 at 592.212 kb on - strand, within HMPREF1078_RS06185 at 592.235 kb on + strand, within HMPREF1078_RS06185 at 592.235 kb on + strand, within HMPREF1078_RS06185 at 592.236 kb on - strand, within HMPREF1078_RS06185 at 592.238 kb on - strand, within HMPREF1078_RS06185 at 592.238 kb on - strand, within HMPREF1078_RS06185
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 590,221 - +0.2 590,221 - -1.5 590,265 - +0.2 590,267 - +0.2 590,267 - -0.8 590,267 - +1.0 590,427 - HMPREF1078_RS06175 0.21 +0.9 590,427 - HMPREF1078_RS06175 0.21 +1.0 590,442 - HMPREF1078_RS06175 0.22 -0.3 590,442 - HMPREF1078_RS06175 0.22 -0.3 590,693 - HMPREF1078_RS06175 0.47 -0.6 590,867 - HMPREF1078_RS06175 0.64 +0.6 591,016 - HMPREF1078_RS06175 0.78 -2.6 591,018 - HMPREF1078_RS06175 0.78 -1.3 591,018 - HMPREF1078_RS06175 0.78 -1.7 591,033 - HMPREF1078_RS06175 0.80 -0.3 591,220 - -0.0 591,220 - -0.4 591,222 - -1.7 591,222 - -0.4 591,270 - -0.5 591,270 - -1.3 591,319 + +0.2 591,355 + +0.6 591,356 - -0.0 591,357 + HMPREF1078_RS06180 0.10 -0.3 591,357 + HMPREF1078_RS06180 0.10 -0.4 591,374 + HMPREF1078_RS06180 0.13 -0.2 591,374 + HMPREF1078_RS06180 0.13 -1.8 591,375 - HMPREF1078_RS06180 0.13 -0.4 591,396 + HMPREF1078_RS06180 0.16 -2.7 591,396 + HMPREF1078_RS06180 0.16 -0.5 591,487 + HMPREF1078_RS06180 0.31 -0.9 591,487 + HMPREF1078_RS06180 0.31 -1.4 591,487 + HMPREF1078_RS06180 0.31 -0.9 591,491 - HMPREF1078_RS06180 0.32 -0.3 591,491 - HMPREF1078_RS06180 0.32 -0.6 591,491 - HMPREF1078_RS06180 0.32 +1.7 591,511 + HMPREF1078_RS06180 0.35 -0.5 591,512 - HMPREF1078_RS06180 0.35 -0.5 591,524 + HMPREF1078_RS06180 0.37 +0.5 591,525 - HMPREF1078_RS06180 0.38 +0.5 591,525 - HMPREF1078_RS06180 0.38 -1.0 591,530 + HMPREF1078_RS06180 0.38 +1.9 591,553 + HMPREF1078_RS06180 0.42 +0.6 591,555 + HMPREF1078_RS06180 0.43 -0.0 591,583 - HMPREF1078_RS06180 0.47 -0.5 591,606 + HMPREF1078_RS06180 0.51 -0.8 591,607 - HMPREF1078_RS06180 0.51 -2.0 591,666 + HMPREF1078_RS06180 0.61 -0.2 591,666 + HMPREF1078_RS06180 0.61 +0.8 591,668 + HMPREF1078_RS06180 0.61 -3.1 591,668 + HMPREF1078_RS06180 0.61 -1.4 591,669 - HMPREF1078_RS06180 0.61 +1.4 591,669 - HMPREF1078_RS06180 0.61 -0.5 591,669 - HMPREF1078_RS06180 0.61 +0.4 591,669 - HMPREF1078_RS06180 0.61 -1.0 591,671 + HMPREF1078_RS06180 0.62 -1.3 591,671 + HMPREF1078_RS06180 0.62 +0.8 591,752 + HMPREF1078_RS06180 0.75 -0.0 591,755 - HMPREF1078_RS06180 0.75 -1.7 591,755 - HMPREF1078_RS06180 0.75 -0.9 591,755 - HMPREF1078_RS06180 0.75 +0.8 591,755 - HMPREF1078_RS06180 0.75 -0.5 591,757 + HMPREF1078_RS06180 0.76 -0.6 591,758 - HMPREF1078_RS06180 0.76 +0.4 591,758 - HMPREF1078_RS06180 0.76 -1.4 591,793 + HMPREF1078_RS06180 0.82 +0.2 591,794 - HMPREF1078_RS06180 0.82 +1.0 591,794 - HMPREF1078_RS06180 0.82 -2.2 591,796 - HMPREF1078_RS06180 0.82 +0.3 591,818 + HMPREF1078_RS06180 0.86 -0.6 591,818 + HMPREF1078_RS06180 0.86 +0.6 591,818 + HMPREF1078_RS06180 0.86 +0.1 591,818 + HMPREF1078_RS06180 0.86 +0.7 591,818 + HMPREF1078_RS06180 0.86 +0.1 591,819 - HMPREF1078_RS06180 0.86 -0.9 591,819 - HMPREF1078_RS06180 0.86 +1.0 591,819 - HMPREF1078_RS06180 0.86 +0.5 591,819 - HMPREF1078_RS06180 0.86 -0.3 591,860 + -0.8 591,860 + -1.6 591,861 - -1.5 591,882 - +0.9 591,904 + +1.0 591,905 - -0.2 591,972 + +1.1 591,973 - +0.6 591,973 - +1.0 591,976 - -1.0 591,978 + -0.7 592,030 + +0.4 592,031 - -1.4 592,031 - +0.6 592,031 - -1.3 592,032 - -0.6 592,040 + +0.2 592,041 - +1.0 592,041 - -0.2 592,078 + -0.7 592,088 + -0.5 592,091 + +0.1 592,091 + +1.1 592,092 - +0.2 592,092 - -0.9 592,116 + HMPREF1078_RS06185 0.10 +0.8 592,124 + HMPREF1078_RS06185 0.11 -0.8 592,131 + HMPREF1078_RS06185 0.12 +1.1 592,132 - HMPREF1078_RS06185 0.12 +1.5 592,132 - HMPREF1078_RS06185 0.12 -0.2 592,132 - HMPREF1078_RS06185 0.12 -0.3 592,172 + HMPREF1078_RS06185 0.15 -0.7 592,174 + HMPREF1078_RS06185 0.15 -1.4 592,202 + HMPREF1078_RS06185 0.18 -0.4 592,202 + HMPREF1078_RS06185 0.18 -2.4 592,202 + HMPREF1078_RS06185 0.18 +0.4 592,205 - HMPREF1078_RS06185 0.18 +0.0 592,212 - HMPREF1078_RS06185 0.18 -1.4 592,235 + HMPREF1078_RS06185 0.20 -1.8 592,235 + HMPREF1078_RS06185 0.20 +1.0 592,236 - HMPREF1078_RS06185 0.20 +0.4 592,238 - HMPREF1078_RS06185 0.21 -1.7 592,238 - HMPREF1078_RS06185 0.21 +0.9
Or see this region's nucleotide sequence