Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05915 and HMPREF1078_RS05920 are separated by 197 nucleotides HMPREF1078_RS05920 and HMPREF1078_RS05925 are separated by 12 nucleotides HMPREF1078_RS05925 and HMPREF1078_RS05930 are separated by 16 nucleotides
HMPREF1078_RS05915: HMPREF1078_RS05915 - ATP-binding protein, at 516,365 to 518,527
_RS05915
HMPREF1078_RS05920: HMPREF1078_RS05920 - RNA polymerase factor sigma-54, at 518,725 to 520,194
_RS05920
HMPREF1078_RS05925: HMPREF1078_RS05925 - hypothetical protein, at 520,207 to 520,827
_RS05925
HMPREF1078_RS05930: HMPREF1078_RS05930 - glycine cleavage system protein GcvH, at 520,844 to 521,224
_RS05930
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 517.821 kb on + strand, within HMPREF1078_RS05915 at 517.822 kb on - strand, within HMPREF1078_RS05915 at 517.823 kb on + strand, within HMPREF1078_RS05915 at 517.823 kb on + strand, within HMPREF1078_RS05915 at 517.847 kb on - strand, within HMPREF1078_RS05915 at 517.912 kb on - strand, within HMPREF1078_RS05915 at 517.938 kb on - strand, within HMPREF1078_RS05915 at 517.961 kb on - strand, within HMPREF1078_RS05915 at 517.961 kb on - strand, within HMPREF1078_RS05915 at 517.961 kb on - strand, within HMPREF1078_RS05915 at 517.961 kb on - strand, within HMPREF1078_RS05915 at 517.961 kb on - strand, within HMPREF1078_RS05915 at 518.039 kb on - strand, within HMPREF1078_RS05915 at 518.039 kb on - strand, within HMPREF1078_RS05915 at 518.050 kb on + strand, within HMPREF1078_RS05915 at 518.176 kb on + strand, within HMPREF1078_RS05915 at 518.399 kb on - strand at 518.429 kb on - strand at 518.430 kb on + strand at 518.478 kb on - strand at 518.478 kb on - strand at 518.480 kb on + strand at 518.527 kb on + strand at 518.527 kb on + strand at 518.528 kb on - strand at 518.528 kb on - strand at 518.528 kb on - strand at 518.528 kb on - strand at 518.528 kb on - strand at 518.529 kb on + strand at 518.591 kb on + strand at 518.603 kb on - strand at 518.607 kb on + strand at 518.607 kb on + strand at 518.724 kb on + strand at 518.999 kb on + strand, within HMPREF1078_RS05920 at 518.999 kb on + strand, within HMPREF1078_RS05920 at 519.145 kb on + strand, within HMPREF1078_RS05920 at 519.419 kb on - strand, within HMPREF1078_RS05920 at 519.641 kb on - strand, within HMPREF1078_RS05920 at 519.855 kb on + strand, within HMPREF1078_RS05920 at 519.872 kb on + strand, within HMPREF1078_RS05920 at 519.897 kb on - strand, within HMPREF1078_RS05920 at 519.932 kb on + strand, within HMPREF1078_RS05920 at 520.046 kb on + strand, within HMPREF1078_RS05920 at 520.115 kb on - strand at 520.116 kb on + strand at 520.117 kb on - strand at 520.207 kb on - strand at 520.224 kb on + strand at 520.224 kb on + strand at 520.225 kb on - strand at 520.225 kb on - strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.264 kb on + strand at 520.265 kb on - strand at 520.265 kb on - strand at 520.294 kb on + strand, within HMPREF1078_RS05925 at 520.391 kb on + strand, within HMPREF1078_RS05925 at 520.421 kb on + strand, within HMPREF1078_RS05925 at 520.451 kb on - strand, within HMPREF1078_RS05925 at 520.490 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.492 kb on - strand, within HMPREF1078_RS05925 at 520.495 kb on + strand, within HMPREF1078_RS05925 at 520.495 kb on + strand, within HMPREF1078_RS05925 at 520.496 kb on - strand, within HMPREF1078_RS05925 at 520.496 kb on - strand, within HMPREF1078_RS05925 at 520.497 kb on + strand, within HMPREF1078_RS05925 at 520.498 kb on - strand, within HMPREF1078_RS05925 at 520.565 kb on + strand, within HMPREF1078_RS05925 at 520.565 kb on + strand, within HMPREF1078_RS05925 at 520.566 kb on - strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.622 kb on + strand, within HMPREF1078_RS05925 at 520.623 kb on - strand, within HMPREF1078_RS05925 at 520.623 kb on - strand, within HMPREF1078_RS05925 at 520.629 kb on + strand, within HMPREF1078_RS05925 at 520.659 kb on - strand, within HMPREF1078_RS05925 at 520.691 kb on + strand, within HMPREF1078_RS05925 at 520.691 kb on + strand, within HMPREF1078_RS05925 at 520.692 kb on - strand, within HMPREF1078_RS05925 at 520.737 kb on + strand, within HMPREF1078_RS05925 at 520.738 kb on - strand, within HMPREF1078_RS05925 at 520.743 kb on + strand, within HMPREF1078_RS05925 at 520.751 kb on + strand, within HMPREF1078_RS05925 at 520.751 kb on + strand, within HMPREF1078_RS05925 at 520.752 kb on - strand, within HMPREF1078_RS05925 at 520.752 kb on - strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.753 kb on + strand, within HMPREF1078_RS05925 at 520.754 kb on - strand, within HMPREF1078_RS05925 at 520.754 kb on - strand, within HMPREF1078_RS05925 at 520.776 kb on + strand at 520.778 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.809 kb on + strand at 520.809 kb on + strand at 520.817 kb on + strand at 520.863 kb on + strand at 520.863 kb on + strand at 520.896 kb on + strand, within HMPREF1078_RS05930 at 520.921 kb on + strand, within HMPREF1078_RS05930 at 520.924 kb on + strand, within HMPREF1078_RS05930 at 520.931 kb on + strand, within HMPREF1078_RS05930 at 521.028 kb on + strand, within HMPREF1078_RS05930 at 521.046 kb on + strand, within HMPREF1078_RS05930 at 521.046 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.124 kb on + strand, within HMPREF1078_RS05930 at 521.126 kb on + strand, within HMPREF1078_RS05930 at 521.151 kb on + strand, within HMPREF1078_RS05930 at 521.151 kb on + strand, within HMPREF1078_RS05930
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 517,821 + HMPREF1078_RS05915 0.67 +0.4 517,822 - HMPREF1078_RS05915 0.67 -0.1 517,823 + HMPREF1078_RS05915 0.67 +0.7 517,823 + HMPREF1078_RS05915 0.67 +0.7 517,847 - HMPREF1078_RS05915 0.69 +0.8 517,912 - HMPREF1078_RS05915 0.72 -1.9 517,938 - HMPREF1078_RS05915 0.73 -1.0 517,961 - HMPREF1078_RS05915 0.74 -0.5 517,961 - HMPREF1078_RS05915 0.74 +0.5 517,961 - HMPREF1078_RS05915 0.74 -1.0 517,961 - HMPREF1078_RS05915 0.74 -1.5 517,961 - HMPREF1078_RS05915 0.74 -2.7 518,039 - HMPREF1078_RS05915 0.77 -0.8 518,039 - HMPREF1078_RS05915 0.77 -0.8 518,050 + HMPREF1078_RS05915 0.78 +0.8 518,176 + HMPREF1078_RS05915 0.84 -0.7 518,399 - +0.7 518,429 - -0.9 518,430 + -0.1 518,478 - -0.5 518,478 - -0.5 518,480 + +0.4 518,527 + -0.2 518,527 + +0.3 518,528 - +0.0 518,528 - -1.5 518,528 - -0.6 518,528 - -0.8 518,528 - -0.4 518,529 + -1.5 518,591 + +0.6 518,603 - +0.2 518,607 + +0.9 518,607 + -1.9 518,724 + -0.5 518,999 + HMPREF1078_RS05920 0.19 +1.8 518,999 + HMPREF1078_RS05920 0.19 -1.4 519,145 + HMPREF1078_RS05920 0.29 +2.5 519,419 - HMPREF1078_RS05920 0.47 -0.9 519,641 - HMPREF1078_RS05920 0.62 -1.3 519,855 + HMPREF1078_RS05920 0.77 -2.3 519,872 + HMPREF1078_RS05920 0.78 +2.5 519,897 - HMPREF1078_RS05920 0.80 -0.6 519,932 + HMPREF1078_RS05920 0.82 -0.9 520,046 + HMPREF1078_RS05920 0.90 +1.0 520,115 - +0.2 520,116 + -0.0 520,117 - +0.2 520,207 - -0.4 520,224 + -0.2 520,224 + +0.3 520,225 - -0.3 520,225 - -0.2 520,264 + -0.0 520,264 + -0.5 520,264 + +0.8 520,264 + +0.4 520,265 - +0.3 520,265 - +0.5 520,294 + HMPREF1078_RS05925 0.14 -1.0 520,391 + HMPREF1078_RS05925 0.30 +0.3 520,421 + HMPREF1078_RS05925 0.34 +0.6 520,451 - HMPREF1078_RS05925 0.39 +1.2 520,490 - HMPREF1078_RS05925 0.46 +0.6 520,492 - HMPREF1078_RS05925 0.46 +1.2 520,492 - HMPREF1078_RS05925 0.46 -1.2 520,492 - HMPREF1078_RS05925 0.46 +0.8 520,492 - HMPREF1078_RS05925 0.46 +0.3 520,492 - HMPREF1078_RS05925 0.46 +0.4 520,495 + HMPREF1078_RS05925 0.46 -1.9 520,495 + HMPREF1078_RS05925 0.46 -0.1 520,496 - HMPREF1078_RS05925 0.47 -0.1 520,496 - HMPREF1078_RS05925 0.47 -0.7 520,497 + HMPREF1078_RS05925 0.47 +0.9 520,498 - HMPREF1078_RS05925 0.47 +0.8 520,565 + HMPREF1078_RS05925 0.58 -2.2 520,565 + HMPREF1078_RS05925 0.58 -1.6 520,566 - HMPREF1078_RS05925 0.58 +0.8 520,622 + HMPREF1078_RS05925 0.67 -0.4 520,622 + HMPREF1078_RS05925 0.67 -1.4 520,622 + HMPREF1078_RS05925 0.67 -2.3 520,622 + HMPREF1078_RS05925 0.67 -0.7 520,622 + HMPREF1078_RS05925 0.67 +0.2 520,623 - HMPREF1078_RS05925 0.67 -0.0 520,623 - HMPREF1078_RS05925 0.67 +0.8 520,629 + HMPREF1078_RS05925 0.68 +0.4 520,659 - HMPREF1078_RS05925 0.73 +1.0 520,691 + HMPREF1078_RS05925 0.78 -2.1 520,691 + HMPREF1078_RS05925 0.78 -1.1 520,692 - HMPREF1078_RS05925 0.78 +0.1 520,737 + HMPREF1078_RS05925 0.85 +0.4 520,738 - HMPREF1078_RS05925 0.86 -3.2 520,743 + HMPREF1078_RS05925 0.86 -0.2 520,751 + HMPREF1078_RS05925 0.88 -0.0 520,751 + HMPREF1078_RS05925 0.88 +0.1 520,752 - HMPREF1078_RS05925 0.88 +1.2 520,752 - HMPREF1078_RS05925 0.88 +0.6 520,753 + HMPREF1078_RS05925 0.88 -1.1 520,753 + HMPREF1078_RS05925 0.88 -0.2 520,753 + HMPREF1078_RS05925 0.88 +0.4 520,754 - HMPREF1078_RS05925 0.88 -0.1 520,754 - HMPREF1078_RS05925 0.88 -0.2 520,776 + -2.8 520,778 + -0.7 520,782 + -0.3 520,782 + +0.6 520,809 + +1.0 520,809 + +0.3 520,817 + -0.8 520,863 + -0.6 520,863 + +0.0 520,896 + HMPREF1078_RS05930 0.14 +1.1 520,921 + HMPREF1078_RS05930 0.20 -1.4 520,924 + HMPREF1078_RS05930 0.21 +0.6 520,931 + HMPREF1078_RS05930 0.23 +0.5 521,028 + HMPREF1078_RS05930 0.48 -1.2 521,046 + HMPREF1078_RS05930 0.53 -0.8 521,046 + HMPREF1078_RS05930 0.53 -0.7 521,124 + HMPREF1078_RS05930 0.73 +0.8 521,124 + HMPREF1078_RS05930 0.73 -1.2 521,124 + HMPREF1078_RS05930 0.73 +0.5 521,124 + HMPREF1078_RS05930 0.73 +0.4 521,124 + HMPREF1078_RS05930 0.73 -0.0 521,126 + HMPREF1078_RS05930 0.74 -1.4 521,151 + HMPREF1078_RS05930 0.81 +0.9 521,151 + HMPREF1078_RS05930 0.81 -0.1
Or see this region's nucleotide sequence