Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotides HMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotides HMPREF1078_RS05615 and HMPREF1078_RS05620 are separated by 62 nucleotides
HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201
_RS05605
HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910
_RS05610
HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396
_RS05615
HMPREF1078_RS05620: HMPREF1078_RS05620 - tetratricopeptide repeat protein, at 423,459 to 427,052
_RS05620
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.040 kb on + strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.055 kb on - strand, within HMPREF1078_RS05605 at 421.056 kb on - strand, within HMPREF1078_RS05605 at 421.134 kb on - strand at 421.298 kb on - strand at 421.412 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.503 kb on + strand, within HMPREF1078_RS05610 at 421.569 kb on - strand, within HMPREF1078_RS05610 at 421.587 kb on + strand, within HMPREF1078_RS05610 at 421.588 kb on - strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.637 kb on - strand, within HMPREF1078_RS05610 at 421.676 kb on - strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 422.051 kb on - strand at 422.126 kb on - strand at 422.172 kb on + strand, within HMPREF1078_RS05615 at 422.173 kb on - strand, within HMPREF1078_RS05615 at 422.272 kb on + strand, within HMPREF1078_RS05615 at 422.272 kb on + strand, within HMPREF1078_RS05615 at 422.273 kb on - strand, within HMPREF1078_RS05615 at 422.291 kb on + strand, within HMPREF1078_RS05615 at 422.319 kb on + strand, within HMPREF1078_RS05615 at 422.322 kb on + strand, within HMPREF1078_RS05615 at 422.371 kb on + strand, within HMPREF1078_RS05615 at 422.433 kb on + strand, within HMPREF1078_RS05615 at 422.434 kb on - strand, within HMPREF1078_RS05615 at 422.450 kb on + strand, within HMPREF1078_RS05615 at 422.450 kb on + strand, within HMPREF1078_RS05615 at 422.490 kb on + strand, within HMPREF1078_RS05615 at 422.491 kb on - strand, within HMPREF1078_RS05615 at 422.575 kb on - strand, within HMPREF1078_RS05615 at 422.575 kb on - strand, within HMPREF1078_RS05615 at 422.578 kb on + strand, within HMPREF1078_RS05615 at 422.578 kb on + strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.711 kb on + strand, within HMPREF1078_RS05615 at 422.711 kb on + strand, within HMPREF1078_RS05615 at 422.716 kb on - strand, within HMPREF1078_RS05615 at 422.716 kb on - strand, within HMPREF1078_RS05615 at 422.720 kb on - strand, within HMPREF1078_RS05615 at 422.722 kb on + strand, within HMPREF1078_RS05615 at 422.736 kb on + strand, within HMPREF1078_RS05615 at 422.760 kb on - strand, within HMPREF1078_RS05615 at 422.760 kb on - strand, within HMPREF1078_RS05615 at 422.775 kb on + strand, within HMPREF1078_RS05615 at 422.775 kb on + strand, within HMPREF1078_RS05615 at 422.831 kb on - strand, within HMPREF1078_RS05615 at 422.867 kb on + strand, within HMPREF1078_RS05615 at 422.867 kb on + strand, within HMPREF1078_RS05615 at 422.917 kb on - strand, within HMPREF1078_RS05615 at 422.917 kb on - strand, within HMPREF1078_RS05615 at 423.028 kb on - strand, within HMPREF1078_RS05615 at 423.034 kb on + strand, within HMPREF1078_RS05615 at 423.035 kb on - strand, within HMPREF1078_RS05615 at 423.041 kb on + strand, within HMPREF1078_RS05615 at 423.042 kb on - strand, within HMPREF1078_RS05615 at 423.042 kb on - strand, within HMPREF1078_RS05615 at 423.080 kb on - strand, within HMPREF1078_RS05615 at 423.239 kb on + strand, within HMPREF1078_RS05615 at 423.245 kb on - strand, within HMPREF1078_RS05615 at 423.259 kb on + strand at 423.279 kb on + strand at 423.279 kb on + strand at 423.279 kb on + strand at 423.280 kb on - strand at 423.358 kb on - strand at 423.365 kb on - strand at 423.365 kb on - strand at 423.410 kb on + strand at 423.547 kb on + strand at 423.548 kb on - strand at 423.566 kb on + strand at 423.566 kb on + strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.600 kb on - strand at 423.600 kb on - strand at 423.600 kb on - strand at 423.621 kb on - strand at 423.653 kb on + strand at 423.978 kb on - strand, within HMPREF1078_RS05620 at 424.008 kb on - strand, within HMPREF1078_RS05620 at 424.008 kb on - strand, within HMPREF1078_RS05620 at 424.086 kb on - strand, within HMPREF1078_RS05620 at 424.104 kb on + strand, within HMPREF1078_RS05620 at 424.105 kb on - strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.363 kb on + strand, within HMPREF1078_RS05620 at 424.364 kb on - strand, within HMPREF1078_RS05620 at 424.389 kb on - strand, within HMPREF1078_RS05620 at 424.389 kb on - strand, within HMPREF1078_RS05620
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 421,005 + HMPREF1078_RS05605 0.81 -0.6 421,005 + HMPREF1078_RS05605 0.81 -1.6 421,040 + HMPREF1078_RS05605 0.84 +0.9 421,041 - HMPREF1078_RS05605 0.85 +0.6 421,041 - HMPREF1078_RS05605 0.85 -1.2 421,055 - HMPREF1078_RS05605 0.86 -1.0 421,056 - HMPREF1078_RS05605 0.86 +0.9 421,134 - +0.8 421,298 - -1.8 421,412 - HMPREF1078_RS05610 0.25 +1.0 421,476 - HMPREF1078_RS05610 0.35 +1.6 421,476 - HMPREF1078_RS05610 0.35 +0.0 421,503 + HMPREF1078_RS05610 0.39 -0.3 421,569 - HMPREF1078_RS05610 0.49 -0.5 421,587 + HMPREF1078_RS05610 0.52 +0.4 421,588 - HMPREF1078_RS05610 0.52 -1.2 421,589 + HMPREF1078_RS05610 0.52 +1.1 421,589 + HMPREF1078_RS05610 0.52 -0.3 421,590 - HMPREF1078_RS05610 0.52 +0.2 421,590 - HMPREF1078_RS05610 0.52 +0.3 421,590 - HMPREF1078_RS05610 0.52 -0.3 421,637 - HMPREF1078_RS05610 0.59 +0.1 421,676 - HMPREF1078_RS05610 0.65 -0.5 421,724 + HMPREF1078_RS05610 0.72 +0.1 421,724 + HMPREF1078_RS05610 0.72 -0.9 421,724 + HMPREF1078_RS05610 0.72 +0.4 421,725 - HMPREF1078_RS05610 0.72 +0.2 421,725 - HMPREF1078_RS05610 0.72 -0.9 422,051 - +0.2 422,126 - -1.1 422,172 + HMPREF1078_RS05615 0.13 -0.4 422,173 - HMPREF1078_RS05615 0.13 -0.3 422,272 + HMPREF1078_RS05615 0.20 -0.2 422,272 + HMPREF1078_RS05615 0.20 +0.7 422,273 - HMPREF1078_RS05615 0.20 +1.3 422,291 + HMPREF1078_RS05615 0.21 -0.2 422,319 + HMPREF1078_RS05615 0.23 +1.2 422,322 + HMPREF1078_RS05615 0.23 -0.5 422,371 + HMPREF1078_RS05615 0.27 -0.1 422,433 + HMPREF1078_RS05615 0.31 -0.2 422,434 - HMPREF1078_RS05615 0.31 -0.0 422,450 + HMPREF1078_RS05615 0.33 -0.5 422,450 + HMPREF1078_RS05615 0.33 +0.4 422,490 + HMPREF1078_RS05615 0.35 +0.5 422,491 - HMPREF1078_RS05615 0.35 -3.1 422,575 - HMPREF1078_RS05615 0.41 +0.1 422,575 - HMPREF1078_RS05615 0.41 -0.4 422,578 + HMPREF1078_RS05615 0.42 -1.0 422,578 + HMPREF1078_RS05615 0.42 -0.0 422,579 - HMPREF1078_RS05615 0.42 -0.8 422,579 - HMPREF1078_RS05615 0.42 +0.3 422,579 - HMPREF1078_RS05615 0.42 -1.0 422,579 - HMPREF1078_RS05615 0.42 -0.3 422,579 - HMPREF1078_RS05615 0.42 +0.1 422,579 - HMPREF1078_RS05615 0.42 -0.8 422,579 - HMPREF1078_RS05615 0.42 +0.5 422,711 + HMPREF1078_RS05615 0.51 +0.1 422,711 + HMPREF1078_RS05615 0.51 -0.7 422,716 - HMPREF1078_RS05615 0.51 -1.0 422,716 - HMPREF1078_RS05615 0.51 -0.7 422,720 - HMPREF1078_RS05615 0.52 -1.6 422,722 + HMPREF1078_RS05615 0.52 -1.1 422,736 + HMPREF1078_RS05615 0.53 -1.2 422,760 - HMPREF1078_RS05615 0.55 -0.6 422,760 - HMPREF1078_RS05615 0.55 -1.0 422,775 + HMPREF1078_RS05615 0.56 -1.5 422,775 + HMPREF1078_RS05615 0.56 +0.1 422,831 - HMPREF1078_RS05615 0.60 +0.2 422,867 + HMPREF1078_RS05615 0.62 -0.0 422,867 + HMPREF1078_RS05615 0.62 +0.1 422,917 - HMPREF1078_RS05615 0.66 -0.5 422,917 - HMPREF1078_RS05615 0.66 -0.3 423,028 - HMPREF1078_RS05615 0.74 +1.0 423,034 + HMPREF1078_RS05615 0.74 -0.7 423,035 - HMPREF1078_RS05615 0.74 -0.4 423,041 + HMPREF1078_RS05615 0.75 -1.0 423,042 - HMPREF1078_RS05615 0.75 +0.6 423,042 - HMPREF1078_RS05615 0.75 +1.0 423,080 - HMPREF1078_RS05615 0.77 +0.7 423,239 + HMPREF1078_RS05615 0.89 +1.5 423,245 - HMPREF1078_RS05615 0.89 -1.5 423,259 + -1.4 423,279 + -0.2 423,279 + -1.0 423,279 + -0.3 423,280 - -1.1 423,358 - -0.3 423,365 - -1.4 423,365 - -1.2 423,410 + -1.3 423,547 + -1.3 423,548 - +1.0 423,566 + +0.6 423,566 + +0.5 423,567 - -0.4 423,567 - -1.0 423,600 - -0.0 423,600 - +0.2 423,600 - -0.8 423,621 - -0.2 423,653 + -0.8 423,978 - HMPREF1078_RS05620 0.14 -1.7 424,008 - HMPREF1078_RS05620 0.15 -0.9 424,008 - HMPREF1078_RS05620 0.15 +0.8 424,086 - HMPREF1078_RS05620 0.17 -0.3 424,104 + HMPREF1078_RS05620 0.18 -1.5 424,105 - HMPREF1078_RS05620 0.18 -1.5 424,119 + HMPREF1078_RS05620 0.18 +2.7 424,119 + HMPREF1078_RS05620 0.18 -1.3 424,119 + HMPREF1078_RS05620 0.18 -1.6 424,363 + HMPREF1078_RS05620 0.25 +1.1 424,364 - HMPREF1078_RS05620 0.25 +0.2 424,389 - HMPREF1078_RS05620 0.26 -0.7 424,389 - HMPREF1078_RS05620 0.26 -1.5
Or see this region's nucleotide sequence