Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05540 and HMPREF1078_RS05545 are separated by 16 nucleotides HMPREF1078_RS05545 and HMPREF1078_RS05550 are separated by 111 nucleotides
HMPREF1078_RS05540: HMPREF1078_RS05540 - signal peptidase I, at 400,127 to 401,524
_RS05540
HMPREF1078_RS05545: HMPREF1078_RS05545 - 4-hydroxy-tetrahydrodipicolinate reductase, at 401,541 to 402,257
_RS05545
HMPREF1078_RS05550: HMPREF1078_RS05550 - DUF2851 family protein, at 402,369 to 403,652
_RS05550
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.539 kb on - strand at 401.556 kb on - strand at 401.556 kb on - strand at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.856 kb on - strand, within HMPREF1078_RS05545 at 401.892 kb on - strand, within HMPREF1078_RS05545 at 401.912 kb on - strand, within HMPREF1078_RS05545 at 401.938 kb on - strand, within HMPREF1078_RS05545 at 401.938 kb on - strand, within HMPREF1078_RS05545 at 401.976 kb on - strand, within HMPREF1078_RS05545 at 401.994 kb on - strand, within HMPREF1078_RS05545 at 401.994 kb on - strand, within HMPREF1078_RS05545 at 402.072 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.090 kb on - strand, within HMPREF1078_RS05545 at 402.145 kb on - strand, within HMPREF1078_RS05545 at 402.165 kb on - strand, within HMPREF1078_RS05545 at 402.205 kb on - strand at 402.262 kb on - strand at 402.262 kb on - strand at 402.264 kb on - strand at 402.264 kb on - strand at 402.264 kb on - strand at 402.270 kb on - strand at 402.387 kb on + strand at 402.408 kb on + strand at 402.428 kb on - strand at 402.517 kb on + strand, within HMPREF1078_RS05550 at 402.557 kb on + strand, within HMPREF1078_RS05550 at 402.558 kb on - strand, within HMPREF1078_RS05550 at 402.603 kb on + strand, within HMPREF1078_RS05550 at 402.603 kb on + strand, within HMPREF1078_RS05550 at 402.604 kb on - strand, within HMPREF1078_RS05550 at 402.613 kb on + strand, within HMPREF1078_RS05550 at 402.628 kb on + strand, within HMPREF1078_RS05550 at 402.629 kb on - strand, within HMPREF1078_RS05550 at 402.629 kb on - strand, within HMPREF1078_RS05550 at 402.718 kb on + strand, within HMPREF1078_RS05550 at 402.718 kb on + strand, within HMPREF1078_RS05550 at 402.767 kb on - strand, within HMPREF1078_RS05550 at 402.767 kb on - strand, within HMPREF1078_RS05550 at 402.788 kb on + strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.790 kb on + strand, within HMPREF1078_RS05550 at 402.790 kb on + strand, within HMPREF1078_RS05550 at 402.847 kb on + strand, within HMPREF1078_RS05550 at 402.847 kb on + strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.895 kb on - strand, within HMPREF1078_RS05550 at 403.066 kb on - strand, within HMPREF1078_RS05550 at 403.089 kb on + strand, within HMPREF1078_RS05550 at 403.106 kb on + strand, within HMPREF1078_RS05550 at 403.150 kb on + strand, within HMPREF1078_RS05550
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 401,539 - -0.7 401,556 - -1.3 401,556 - +0.1 401,734 - HMPREF1078_RS05545 0.27 -3.1 401,734 - HMPREF1078_RS05545 0.27 -2.7 401,734 - HMPREF1078_RS05545 0.27 -1.0 401,734 - HMPREF1078_RS05545 0.27 -1.8 401,817 - HMPREF1078_RS05545 0.38 -2.5 401,817 - HMPREF1078_RS05545 0.38 -1.4 401,817 - HMPREF1078_RS05545 0.38 -1.5 401,856 - HMPREF1078_RS05545 0.44 -3.2 401,892 - HMPREF1078_RS05545 0.49 -2.6 401,912 - HMPREF1078_RS05545 0.52 -2.1 401,938 - HMPREF1078_RS05545 0.55 +2.5 401,938 - HMPREF1078_RS05545 0.55 -2.7 401,976 - HMPREF1078_RS05545 0.61 +1.0 401,994 - HMPREF1078_RS05545 0.63 -1.7 401,994 - HMPREF1078_RS05545 0.63 -1.1 402,072 - HMPREF1078_RS05545 0.74 -1.4 402,074 - HMPREF1078_RS05545 0.74 -2.1 402,074 - HMPREF1078_RS05545 0.74 -1.2 402,074 - HMPREF1078_RS05545 0.74 -1.7 402,090 - HMPREF1078_RS05545 0.77 -0.5 402,145 - HMPREF1078_RS05545 0.84 -2.2 402,165 - HMPREF1078_RS05545 0.87 -3.5 402,205 - -1.6 402,262 - +0.5 402,262 - +0.8 402,264 - +0.2 402,264 - -2.3 402,264 - -0.8 402,270 - -1.9 402,387 + -1.1 402,408 + -0.4 402,428 - -0.7 402,517 + HMPREF1078_RS05550 0.12 -0.6 402,557 + HMPREF1078_RS05550 0.15 -1.0 402,558 - HMPREF1078_RS05550 0.15 +0.1 402,603 + HMPREF1078_RS05550 0.18 -0.7 402,603 + HMPREF1078_RS05550 0.18 -0.0 402,604 - HMPREF1078_RS05550 0.18 -0.6 402,613 + HMPREF1078_RS05550 0.19 +1.2 402,628 + HMPREF1078_RS05550 0.20 -0.5 402,629 - HMPREF1078_RS05550 0.20 +0.3 402,629 - HMPREF1078_RS05550 0.20 +1.8 402,718 + HMPREF1078_RS05550 0.27 +0.4 402,718 + HMPREF1078_RS05550 0.27 -0.1 402,767 - HMPREF1078_RS05550 0.31 +0.3 402,767 - HMPREF1078_RS05550 0.31 -0.4 402,788 + HMPREF1078_RS05550 0.33 -0.4 402,789 - HMPREF1078_RS05550 0.33 -1.7 402,789 - HMPREF1078_RS05550 0.33 +1.0 402,789 - HMPREF1078_RS05550 0.33 +1.5 402,790 + HMPREF1078_RS05550 0.33 +1.0 402,790 + HMPREF1078_RS05550 0.33 -0.4 402,847 + HMPREF1078_RS05550 0.37 -0.2 402,847 + HMPREF1078_RS05550 0.37 -1.1 402,848 - HMPREF1078_RS05550 0.37 +0.3 402,848 - HMPREF1078_RS05550 0.37 +0.7 402,848 - HMPREF1078_RS05550 0.37 -0.5 402,848 - HMPREF1078_RS05550 0.37 -0.6 402,895 - HMPREF1078_RS05550 0.41 -3.2 403,066 - HMPREF1078_RS05550 0.54 -0.8 403,089 + HMPREF1078_RS05550 0.56 +0.6 403,106 + HMPREF1078_RS05550 0.57 -0.4 403,150 + HMPREF1078_RS05550 0.61 +0.0
Or see this region's nucleotide sequence