Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05485 and HMPREF1078_RS05490 are separated by 73 nucleotides HMPREF1078_RS05490 and HMPREF1078_RS05495 are separated by 111 nucleotides HMPREF1078_RS05495 and HMPREF1078_RS05500 are separated by 3 nucleotides
HMPREF1078_RS05485: HMPREF1078_RS05485 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 386,966 to 387,529
_RS05485
HMPREF1078_RS05490: HMPREF1078_RS05490 - DUF2795 domain-containing protein, at 387,603 to 387,824
_RS05490
HMPREF1078_RS05495: HMPREF1078_RS05495 - type IX secretion system membrane protein PorP/SprF, at 387,936 to 388,886
_RS05495
HMPREF1078_RS05500: HMPREF1078_RS05500 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 388,890 to 390,317
_RS05500
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.939 kb on + strand at 386.939 kb on + strand at 386.940 kb on - strand at 386.940 kb on - strand at 386.953 kb on - strand at 386.958 kb on - strand at 386.966 kb on - strand at 386.982 kb on + strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.984 kb on + strand at 386.984 kb on + strand at 387.018 kb on + strand at 387.019 kb on - strand at 387.066 kb on - strand, within HMPREF1078_RS05485 at 387.070 kb on + strand, within HMPREF1078_RS05485 at 387.071 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.220 kb on - strand, within HMPREF1078_RS05485 at 387.386 kb on + strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.472 kb on + strand, within HMPREF1078_RS05485 at 387.483 kb on + strand at 387.491 kb on - strand at 387.527 kb on + strand at 387.527 kb on + strand at 387.822 kb on + strand at 387.823 kb on - strand at 387.823 kb on - strand at 387.840 kb on + strand at 387.840 kb on + strand at 387.841 kb on - strand at 387.841 kb on - strand at 387.853 kb on + strand at 387.874 kb on - strand at 387.935 kb on + strand at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 388.044 kb on - strand, within HMPREF1078_RS05495 at 388.053 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.105 kb on - strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.249 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.434 kb on + strand, within HMPREF1078_RS05495 at 388.495 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495 at 388.551 kb on + strand, within HMPREF1078_RS05495 at 388.578 kb on + strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.597 kb on + strand, within HMPREF1078_RS05495 at 388.598 kb on - strand, within HMPREF1078_RS05495 at 388.637 kb on - strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.654 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.658 kb on + strand, within HMPREF1078_RS05495 at 388.659 kb on - strand, within HMPREF1078_RS05495 at 388.660 kb on - strand, within HMPREF1078_RS05495 at 388.714 kb on + strand, within HMPREF1078_RS05495 at 388.715 kb on - strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.747 kb on - strand, within HMPREF1078_RS05495 at 388.753 kb on - strand, within HMPREF1078_RS05495 at 388.769 kb on + strand, within HMPREF1078_RS05495 at 388.770 kb on - strand, within HMPREF1078_RS05495 at 388.814 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.865 kb on + strand at 388.865 kb on + strand at 388.866 kb on - strand at 388.874 kb on - strand at 388.877 kb on + strand at 388.877 kb on + strand at 388.877 kb on + strand at 388.878 kb on - strand at 388.878 kb on - strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.880 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.887 kb on + strand at 388.887 kb on + strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.890 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.909 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on - strand at 388.981 kb on + strand at 389.155 kb on - strand, within HMPREF1078_RS05500 at 389.218 kb on - strand, within HMPREF1078_RS05500 at 389.252 kb on + strand, within HMPREF1078_RS05500 at 389.253 kb on - strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.403 kb on + strand, within HMPREF1078_RS05500 at 389.419 kb on - strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.478 kb on - strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.624 kb on + strand, within HMPREF1078_RS05500 at 389.625 kb on - strand, within HMPREF1078_RS05500 at 389.629 kb on - strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.694 kb on + strand, within HMPREF1078_RS05500 at 389.695 kb on - strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.768 kb on - strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 386,939 + +0.5 386,939 + +0.4 386,940 - +0.9 386,940 - -0.5 386,953 - +0.6 386,958 - +0.0 386,966 - +1.3 386,982 + -0.1 386,983 - -0.3 386,983 - +0.0 386,983 - +0.8 386,984 + -1.3 386,984 + -1.3 387,018 + -1.9 387,019 - +0.1 387,066 - HMPREF1078_RS05485 0.18 +1.0 387,070 + HMPREF1078_RS05485 0.18 +0.6 387,071 - HMPREF1078_RS05485 0.19 +0.5 387,183 - HMPREF1078_RS05485 0.38 +0.0 387,183 - HMPREF1078_RS05485 0.38 -0.6 387,220 - HMPREF1078_RS05485 0.45 -1.3 387,386 + HMPREF1078_RS05485 0.74 -1.5 387,387 - HMPREF1078_RS05485 0.75 -0.9 387,387 - HMPREF1078_RS05485 0.75 +0.1 387,472 + HMPREF1078_RS05485 0.90 +0.7 387,483 + -0.9 387,491 - -3.3 387,527 + -0.0 387,527 + +1.7 387,822 + -0.9 387,823 - -0.1 387,823 - -0.2 387,840 + -0.0 387,840 + -0.6 387,841 - -0.6 387,841 - -0.2 387,853 + +0.3 387,874 - +0.3 387,935 + +2.5 387,935 + +0.9 387,956 + -0.6 387,956 + -0.3 388,044 - HMPREF1078_RS05495 0.11 +1.0 388,053 + HMPREF1078_RS05495 0.12 -2.3 388,104 + HMPREF1078_RS05495 0.18 +0.2 388,104 + HMPREF1078_RS05495 0.18 -0.0 388,105 - HMPREF1078_RS05495 0.18 +0.2 388,229 + HMPREF1078_RS05495 0.31 +0.2 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 +1.5 388,230 - HMPREF1078_RS05495 0.31 +0.7 388,249 - HMPREF1078_RS05495 0.33 -0.3 388,255 - HMPREF1078_RS05495 0.34 -1.4 388,255 - HMPREF1078_RS05495 0.34 -1.6 388,434 + HMPREF1078_RS05495 0.52 +0.1 388,495 + HMPREF1078_RS05495 0.59 -1.0 388,518 + HMPREF1078_RS05495 0.61 +0.5 388,551 + HMPREF1078_RS05495 0.65 +0.3 388,578 + HMPREF1078_RS05495 0.68 +0.7 388,579 - HMPREF1078_RS05495 0.68 +0.2 388,579 - HMPREF1078_RS05495 0.68 -0.0 388,585 + HMPREF1078_RS05495 0.68 -1.2 388,585 + HMPREF1078_RS05495 0.68 +1.0 388,585 + HMPREF1078_RS05495 0.68 -1.4 388,597 + HMPREF1078_RS05495 0.70 -0.9 388,598 - HMPREF1078_RS05495 0.70 -0.9 388,637 - HMPREF1078_RS05495 0.74 -0.8 388,653 + HMPREF1078_RS05495 0.75 -1.5 388,653 + HMPREF1078_RS05495 0.75 +0.5 388,654 - HMPREF1078_RS05495 0.75 -0.5 388,656 - HMPREF1078_RS05495 0.76 -0.0 388,656 - HMPREF1078_RS05495 0.76 -0.9 388,658 + HMPREF1078_RS05495 0.76 -0.3 388,659 - HMPREF1078_RS05495 0.76 +1.5 388,660 - HMPREF1078_RS05495 0.76 -1.8 388,714 + HMPREF1078_RS05495 0.82 -1.5 388,715 - HMPREF1078_RS05495 0.82 -1.4 388,741 + HMPREF1078_RS05495 0.85 +0.3 388,741 + HMPREF1078_RS05495 0.85 -1.5 388,746 + HMPREF1078_RS05495 0.85 -0.2 388,746 + HMPREF1078_RS05495 0.85 -0.9 388,747 - HMPREF1078_RS05495 0.85 +1.5 388,753 - HMPREF1078_RS05495 0.86 -0.4 388,769 + HMPREF1078_RS05495 0.88 -0.5 388,770 - HMPREF1078_RS05495 0.88 +0.2 388,814 - +1.5 388,821 + +3.0 388,821 + -0.0 388,821 + -0.8 388,865 + -0.6 388,865 + +0.2 388,866 - +1.2 388,874 - -0.6 388,877 + +1.5 388,877 + -0.5 388,877 + -0.8 388,878 - +1.0 388,878 - -0.0 388,879 + +0.6 388,879 + -0.9 388,879 + -1.0 388,880 - -1.4 388,883 - -0.8 388,883 - -0.5 388,883 - +0.2 388,884 + -0.6 388,884 + -0.5 388,884 + +1.2 388,884 + +0.5 388,884 + -0.0 388,884 + -0.0 388,884 + -0.6 388,884 + -0.1 388,884 + -0.9 388,885 - -1.0 388,885 - -0.0 388,885 - +0.5 388,885 - +0.2 388,885 - -2.0 388,885 - -0.0 388,885 - -0.3 388,885 - +1.0 388,885 - -0.5 388,885 - +2.5 388,885 - +1.5 388,885 - -0.3 388,887 + +2.2 388,887 + -0.8 388,888 - -1.8 388,888 - -0.5 388,888 - -0.3 388,888 - +0.2 388,890 - -0.9 388,907 - +0.2 388,907 - +0.2 388,907 - +0.2 388,907 - +0.2 388,907 - +1.1 388,907 - +1.0 388,909 + -0.8 388,931 + +0.1 388,931 + -0.8 388,931 + -0.3 388,931 - +0.2 388,981 + +1.2 389,155 - HMPREF1078_RS05500 0.19 +0.2 389,218 - HMPREF1078_RS05500 0.23 -0.9 389,252 + HMPREF1078_RS05500 0.25 -0.2 389,253 - HMPREF1078_RS05500 0.25 -1.4 389,349 + HMPREF1078_RS05500 0.32 +1.1 389,349 + HMPREF1078_RS05500 0.32 -0.5 389,403 + HMPREF1078_RS05500 0.36 +2.1 389,419 - HMPREF1078_RS05500 0.37 +0.5 389,426 + HMPREF1078_RS05500 0.38 +1.0 389,426 + HMPREF1078_RS05500 0.38 -1.6 389,426 + HMPREF1078_RS05500 0.38 +0.5 389,426 + HMPREF1078_RS05500 0.38 +1.8 389,427 - HMPREF1078_RS05500 0.38 +2.5 389,427 - HMPREF1078_RS05500 0.38 -0.9 389,427 - HMPREF1078_RS05500 0.38 +1.0 389,478 - HMPREF1078_RS05500 0.41 +1.0 389,535 + HMPREF1078_RS05500 0.45 -0.1 389,535 + HMPREF1078_RS05500 0.45 +0.5 389,624 + HMPREF1078_RS05500 0.51 +0.2 389,625 - HMPREF1078_RS05500 0.51 +1.0 389,629 - HMPREF1078_RS05500 0.52 +0.6 389,682 + HMPREF1078_RS05500 0.55 +1.1 389,682 + HMPREF1078_RS05500 0.55 -0.0 389,682 + HMPREF1078_RS05500 0.55 +0.7 389,682 + HMPREF1078_RS05500 0.55 -1.5 389,683 - HMPREF1078_RS05500 0.56 -1.0 389,683 - HMPREF1078_RS05500 0.56 -0.5 389,684 + HMPREF1078_RS05500 0.56 -2.2 389,684 + HMPREF1078_RS05500 0.56 +1.5 389,684 + HMPREF1078_RS05500 0.56 +1.2 389,684 + HMPREF1078_RS05500 0.56 -1.0 389,685 - HMPREF1078_RS05500 0.56 -0.5 389,685 - HMPREF1078_RS05500 0.56 +2.5 389,685 - HMPREF1078_RS05500 0.56 -0.3 389,685 - HMPREF1078_RS05500 0.56 +0.4 389,690 + HMPREF1078_RS05500 0.56 -1.6 389,690 + HMPREF1078_RS05500 0.56 -0.8 389,690 + HMPREF1078_RS05500 0.56 -1.4 389,690 + HMPREF1078_RS05500 0.56 -0.5 389,690 + HMPREF1078_RS05500 0.56 -1.4 389,690 + HMPREF1078_RS05500 0.56 +1.4 389,690 + HMPREF1078_RS05500 0.56 -1.0 389,691 - HMPREF1078_RS05500 0.56 -0.0 389,691 - HMPREF1078_RS05500 0.56 -1.0 389,691 - HMPREF1078_RS05500 0.56 -0.0 389,691 - HMPREF1078_RS05500 0.56 +1.5 389,691 - HMPREF1078_RS05500 0.56 +0.4 389,691 - HMPREF1078_RS05500 0.56 -0.0 389,694 + HMPREF1078_RS05500 0.56 -1.5 389,695 - HMPREF1078_RS05500 0.56 -0.0 389,731 + HMPREF1078_RS05500 0.59 +0.4 389,731 + HMPREF1078_RS05500 0.59 +0.2 389,768 - HMPREF1078_RS05500 0.61 +0.2 389,859 + HMPREF1078_RS05500 0.68 -1.0 389,859 + HMPREF1078_RS05500 0.68 -2.6
Or see this region's nucleotide sequence