Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05115

Experiment: marine_broth_2216 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS19525 and HMPREF1078_RS05115 are separated by 169 nucleotidesHMPREF1078_RS05115 and HMPREF1078_RS05120 are separated by 4 nucleotides HMPREF1078_RS19525: HMPREF1078_RS19525 - DUF6043 family protein, at 283,901 to 284,842 _RS19525 HMPREF1078_RS05115: HMPREF1078_RS05115 - helix-turn-helix domain-containing protein, at 285,012 to 285,326 _RS05115 HMPREF1078_RS05120: HMPREF1078_RS05120 - DUF5906 domain-containing protein, at 285,331 to 286,521 _RS05120 Position (kb) 285 286Strain fitness (log2 ratio) -2 -1 0 1 2at 284.023 kb on + strand, within HMPREF1078_RS19525at 284.040 kb on + strand, within HMPREF1078_RS19525at 284.059 kb on + strand, within HMPREF1078_RS19525at 284.130 kb on + strand, within HMPREF1078_RS19525at 284.153 kb on - strand, within HMPREF1078_RS19525at 284.154 kb on + strand, within HMPREF1078_RS19525at 284.154 kb on + strand, within HMPREF1078_RS19525at 284.220 kb on - strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.278 kb on + strand, within HMPREF1078_RS19525at 284.278 kb on - strand, within HMPREF1078_RS19525at 284.291 kb on + strand, within HMPREF1078_RS19525at 284.292 kb on - strand, within HMPREF1078_RS19525at 284.292 kb on - strand, within HMPREF1078_RS19525at 284.377 kb on - strand, within HMPREF1078_RS19525at 284.467 kb on + strand, within HMPREF1078_RS19525at 284.467 kb on + strand, within HMPREF1078_RS19525at 284.468 kb on - strand, within HMPREF1078_RS19525at 284.468 kb on - strand, within HMPREF1078_RS19525at 284.554 kb on - strand, within HMPREF1078_RS19525at 284.605 kb on + strand, within HMPREF1078_RS19525at 284.606 kb on - strand, within HMPREF1078_RS19525at 284.606 kb on - strand, within HMPREF1078_RS19525at 284.607 kb on + strand, within HMPREF1078_RS19525at 284.828 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.833 kb on - strandat 284.833 kb on - strandat 284.901 kb on - strandat 284.917 kb on - strandat 284.918 kb on + strandat 284.920 kb on + strandat 284.964 kb on - strandat 284.966 kb on + strandat 285.011 kb on + strandat 285.012 kb on - strandat 285.022 kb on + strandat 285.022 kb on + strandat 285.022 kb on + strandat 285.023 kb on - strandat 285.023 kb on - strandat 285.067 kb on + strand, within HMPREF1078_RS05115at 285.088 kb on + strand, within HMPREF1078_RS05115at 285.274 kb on - strand, within HMPREF1078_RS05115at 285.324 kb on + strandat 285.324 kb on + strandat 285.325 kb on - strandat 285.330 kb on + strandat 285.331 kb on - strandat 285.346 kb on + strandat 285.346 kb on + strandat 285.347 kb on - strandat 285.370 kb on + strandat 285.425 kb on + strandat 285.487 kb on + strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.565 kb on - strand, within HMPREF1078_RS05120at 285.566 kb on + strand, within HMPREF1078_RS05120at 285.566 kb on + strand, within HMPREF1078_RS05120at 285.567 kb on - strand, within HMPREF1078_RS05120at 285.567 kb on - strand, within HMPREF1078_RS05120at 285.574 kb on - strand, within HMPREF1078_RS05120at 285.574 kb on - strand, within HMPREF1078_RS05120at 285.638 kb on - strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.656 kb on - strand, within HMPREF1078_RS05120at 285.656 kb on - strand, within HMPREF1078_RS05120at 285.670 kb on + strand, within HMPREF1078_RS05120at 285.696 kb on + strand, within HMPREF1078_RS05120at 285.697 kb on - strand, within HMPREF1078_RS05120at 285.840 kb on - strand, within HMPREF1078_RS05120at 285.840 kb on - strand, within HMPREF1078_RS05120at 285.842 kb on + strand, within HMPREF1078_RS05120at 285.919 kb on + strand, within HMPREF1078_RS05120at 285.980 kb on + strand, within HMPREF1078_RS05120at 285.980 kb on + strand, within HMPREF1078_RS05120at 285.981 kb on - strand, within HMPREF1078_RS05120at 286.008 kb on - strand, within HMPREF1078_RS05120at 286.008 kb on - strand, within HMPREF1078_RS05120at 286.014 kb on - strand, within HMPREF1078_RS05120at 286.104 kb on - strand, within HMPREF1078_RS05120at 286.104 kb on - strand, within HMPREF1078_RS05120at 286.239 kb on - strand, within HMPREF1078_RS05120at 286.292 kb on + strand, within HMPREF1078_RS05120at 286.293 kb on - strand, within HMPREF1078_RS05120at 286.316 kb on + strand, within HMPREF1078_RS05120at 286.325 kb on + strand, within HMPREF1078_RS05120at 286.325 kb on + strand, within HMPREF1078_RS05120at 286.326 kb on - strand, within HMPREF1078_RS05120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
remove
284,023 + HMPREF1078_RS19525 0.13 -0.3
284,040 + HMPREF1078_RS19525 0.15 -0.2
284,059 + HMPREF1078_RS19525 0.17 +0.6
284,130 + HMPREF1078_RS19525 0.24 +0.1
284,153 - HMPREF1078_RS19525 0.27 +1.3
284,154 + HMPREF1078_RS19525 0.27 +0.4
284,154 + HMPREF1078_RS19525 0.27 +0.7
284,220 - HMPREF1078_RS19525 0.34 +0.7
284,231 + HMPREF1078_RS19525 0.35 -0.6
284,231 + HMPREF1078_RS19525 0.35 +0.4
284,231 + HMPREF1078_RS19525 0.35 -0.5
284,278 + HMPREF1078_RS19525 0.40 +0.1
284,278 - HMPREF1078_RS19525 0.40 -1.5
284,291 + HMPREF1078_RS19525 0.41 -0.5
284,292 - HMPREF1078_RS19525 0.42 +0.3
284,292 - HMPREF1078_RS19525 0.42 -0.0
284,377 - HMPREF1078_RS19525 0.51 +0.6
284,467 + HMPREF1078_RS19525 0.60 -0.5
284,467 + HMPREF1078_RS19525 0.60 +0.1
284,468 - HMPREF1078_RS19525 0.60 +0.3
284,468 - HMPREF1078_RS19525 0.60 -1.5
284,554 - HMPREF1078_RS19525 0.69 +1.4
284,605 + HMPREF1078_RS19525 0.75 -0.3
284,606 - HMPREF1078_RS19525 0.75 -1.2
284,606 - HMPREF1078_RS19525 0.75 -0.2
284,607 + HMPREF1078_RS19525 0.75 +0.7
284,828 + -0.5
284,832 + -0.3
284,832 + +0.7
284,832 + +0.1
284,832 + +0.9
284,832 + +0.4
284,832 + -0.5
284,833 - -0.3
284,833 - -0.3
284,901 - +0.5
284,917 - +0.1
284,918 + +0.5
284,920 + +0.2
284,964 - -0.4
284,966 + +0.1
285,011 + -0.3
285,012 - -1.2
285,022 + +1.2
285,022 + -1.6
285,022 + +0.6
285,023 - -0.9
285,023 - -0.7
285,067 + HMPREF1078_RS05115 0.17 -0.3
285,088 + HMPREF1078_RS05115 0.24 -1.5
285,274 - HMPREF1078_RS05115 0.83 -1.2
285,324 + -0.6
285,324 + -0.4
285,325 - -1.3
285,330 + -0.3
285,331 - +1.8
285,346 + -0.6
285,346 + +0.1
285,347 - -0.2
285,370 + +0.7
285,425 + -0.2
285,487 + HMPREF1078_RS05120 0.13 -0.0
285,488 - HMPREF1078_RS05120 0.13 +0.6
285,488 - HMPREF1078_RS05120 0.13 -1.6
285,488 - HMPREF1078_RS05120 0.13 -0.1
285,564 + HMPREF1078_RS05120 0.20 -0.2
285,564 + HMPREF1078_RS05120 0.20 -0.0
285,564 + HMPREF1078_RS05120 0.20 +0.6
285,565 - HMPREF1078_RS05120 0.20 -0.6
285,566 + HMPREF1078_RS05120 0.20 +0.3
285,566 + HMPREF1078_RS05120 0.20 -0.4
285,567 - HMPREF1078_RS05120 0.20 +0.0
285,567 - HMPREF1078_RS05120 0.20 -0.1
285,574 - HMPREF1078_RS05120 0.20 -1.1
285,574 - HMPREF1078_RS05120 0.20 -1.5
285,638 - HMPREF1078_RS05120 0.26 +0.3
285,655 + HMPREF1078_RS05120 0.27 -1.6
285,655 + HMPREF1078_RS05120 0.27 -0.8
285,655 + HMPREF1078_RS05120 0.27 -0.1
285,656 - HMPREF1078_RS05120 0.27 -0.1
285,656 - HMPREF1078_RS05120 0.27 -0.9
285,670 + HMPREF1078_RS05120 0.28 +0.4
285,696 + HMPREF1078_RS05120 0.31 -0.6
285,697 - HMPREF1078_RS05120 0.31 +0.9
285,840 - HMPREF1078_RS05120 0.43 -0.4
285,840 - HMPREF1078_RS05120 0.43 +1.3
285,842 + HMPREF1078_RS05120 0.43 -0.9
285,919 + HMPREF1078_RS05120 0.49 +0.4
285,980 + HMPREF1078_RS05120 0.54 +0.4
285,980 + HMPREF1078_RS05120 0.54 +0.7
285,981 - HMPREF1078_RS05120 0.55 +0.5
286,008 - HMPREF1078_RS05120 0.57 +1.3
286,008 - HMPREF1078_RS05120 0.57 +0.3
286,014 - HMPREF1078_RS05120 0.57 -0.3
286,104 - HMPREF1078_RS05120 0.65 +0.7
286,104 - HMPREF1078_RS05120 0.65 -1.0
286,239 - HMPREF1078_RS05120 0.76 +0.7
286,292 + HMPREF1078_RS05120 0.81 -0.3
286,293 - HMPREF1078_RS05120 0.81 -2.2
286,316 + HMPREF1078_RS05120 0.83 +1.2
286,325 + HMPREF1078_RS05120 0.83 +0.2
286,325 + HMPREF1078_RS05120 0.83 +0.5
286,326 - HMPREF1078_RS05120 0.84 -1.1

Or see this region's nucleotide sequence