Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04920 and HMPREF1078_RS04925 are separated by 190 nucleotides HMPREF1078_RS04925 and HMPREF1078_RS04930 are separated by 85 nucleotides HMPREF1078_RS04930 and HMPREF1078_RS04935 are separated by 154 nucleotides HMPREF1078_RS04935 and HMPREF1078_RS04940 are separated by 4 nucleotides
HMPREF1078_RS04920: HMPREF1078_RS04920 - LrgB family protein, at 240,150 to 240,848
_RS04920
HMPREF1078_RS04925: HMPREF1078_RS04925 - elongation factor P, at 241,039 to 241,602
_RS04925
HMPREF1078_RS04930: HMPREF1078_RS04930 - DNA repair protein RadC, at 241,688 to 242,368
_RS04930
HMPREF1078_RS04935: HMPREF1078_RS04935 - iron-sulfur cluster assembly protein, at 242,523 to 242,840
_RS04935
HMPREF1078_RS04940: HMPREF1078_RS04940 - UDP-2,3-diacylglucosamine diphosphatase, at 242,845 to 243,621
_RS04940
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.725 kb on + strand, within HMPREF1078_RS04920 at 240.831 kb on - strand at 240.833 kb on + strand at 240.881 kb on + strand at 240.882 kb on - strand at 240.893 kb on - strand at 240.927 kb on + strand at 240.927 kb on + strand at 240.938 kb on - strand at 240.953 kb on + strand at 240.953 kb on + strand at 240.954 kb on - strand at 241.012 kb on + strand at 241.018 kb on + strand at 241.018 kb on + strand at 241.019 kb on - strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.020 kb on + strand at 241.021 kb on - strand at 241.021 kb on - strand at 241.023 kb on + strand at 241.024 kb on - strand at 241.024 kb on - strand at 241.026 kb on - strand at 241.035 kb on + strand at 241.038 kb on + strand at 241.039 kb on - strand at 241.044 kb on + strand at 241.045 kb on - strand at 241.074 kb on + strand at 241.075 kb on - strand at 241.075 kb on - strand at 241.089 kb on + strand at 241.090 kb on - strand at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.096 kb on + strand, within HMPREF1078_RS04925 at 241.121 kb on + strand, within HMPREF1078_RS04925 at 241.152 kb on + strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.153 kb on - strand, within HMPREF1078_RS04925 at 241.173 kb on - strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.226 kb on + strand, within HMPREF1078_RS04925 at 241.232 kb on + strand, within HMPREF1078_RS04925 at 241.246 kb on + strand, within HMPREF1078_RS04925 at 241.252 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.254 kb on + strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.255 kb on - strand, within HMPREF1078_RS04925 at 241.258 kb on + strand, within HMPREF1078_RS04925 at 241.259 kb on - strand, within HMPREF1078_RS04925 at 241.276 kb on + strand, within HMPREF1078_RS04925 at 241.308 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.413 kb on + strand, within HMPREF1078_RS04925 at 241.422 kb on - strand, within HMPREF1078_RS04925 at 241.444 kb on + strand, within HMPREF1078_RS04925 at 241.447 kb on - strand, within HMPREF1078_RS04925 at 241.470 kb on + strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.471 kb on - strand, within HMPREF1078_RS04925 at 241.503 kb on - strand, within HMPREF1078_RS04925 at 241.520 kb on + strand, within HMPREF1078_RS04925 at 241.566 kb on + strand at 241.566 kb on + strand at 241.582 kb on + strand at 241.583 kb on - strand at 241.583 kb on - strand at 241.586 kb on + strand at 241.587 kb on - strand at 241.594 kb on - strand at 241.605 kb on + strand at 241.606 kb on - strand at 241.607 kb on + strand at 241.608 kb on - strand at 241.614 kb on + strand at 241.614 kb on + strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.615 kb on - strand at 241.621 kb on + strand at 241.622 kb on - strand at 241.628 kb on + strand at 241.631 kb on - strand at 241.643 kb on + strand at 241.643 kb on + strand at 241.644 kb on - strand at 241.644 kb on - strand at 241.651 kb on - strand at 241.657 kb on + strand at 241.657 kb on + strand at 241.658 kb on - strand at 241.688 kb on - strand at 241.688 kb on - strand at 241.695 kb on + strand at 241.737 kb on + strand at 241.747 kb on + strand at 241.748 kb on - strand at 241.748 kb on - strand at 241.774 kb on - strand, within HMPREF1078_RS04930 at 241.852 kb on + strand, within HMPREF1078_RS04930 at 241.852 kb on + strand, within HMPREF1078_RS04930 at 241.855 kb on + strand, within HMPREF1078_RS04930 at 241.900 kb on + strand, within HMPREF1078_RS04930 at 241.930 kb on + strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 241.931 kb on - strand, within HMPREF1078_RS04930 at 242.212 kb on + strand, within HMPREF1078_RS04930 at 242.299 kb on - strand, within HMPREF1078_RS04930 at 242.299 kb on - strand, within HMPREF1078_RS04930 at 242.307 kb on + strand at 242.314 kb on + strand at 242.315 kb on - strand at 242.315 kb on - strand at 242.315 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.337 kb on - strand at 242.345 kb on + strand at 242.346 kb on - strand at 242.371 kb on + strand at 242.377 kb on + strand at 242.385 kb on - strand at 242.393 kb on + strand at 242.393 kb on + strand at 242.400 kb on - strand at 242.459 kb on - strand at 242.497 kb on + strand at 242.497 kb on + strand at 242.522 kb on + strand at 242.570 kb on + strand, within HMPREF1078_RS04935 at 242.578 kb on + strand, within HMPREF1078_RS04935 at 242.625 kb on + strand, within HMPREF1078_RS04935 at 242.625 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.632 kb on + strand, within HMPREF1078_RS04935 at 242.638 kb on + strand, within HMPREF1078_RS04935 at 242.731 kb on + strand, within HMPREF1078_RS04935
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 240,725 + HMPREF1078_RS04920 0.82 -0.4 240,831 - +0.1 240,833 + +0.1 240,881 + +0.1 240,882 - +0.7 240,893 - -0.6 240,927 + -0.8 240,927 + -0.2 240,938 - -0.5 240,953 + -0.3 240,953 + +0.2 240,954 - +0.7 241,012 + -0.1 241,018 + +0.5 241,018 + +0.5 241,019 - -0.9 241,020 + +0.2 241,020 + +1.0 241,020 + +0.1 241,020 + +1.7 241,021 - -1.8 241,021 - +1.3 241,023 + +0.3 241,024 - -1.4 241,024 - -1.4 241,026 - +1.1 241,035 + -2.2 241,038 + +0.5 241,039 - -0.8 241,044 + -0.6 241,045 - -1.8 241,074 + -2.2 241,075 - +1.5 241,075 - +0.1 241,089 + +0.3 241,090 - -1.7 241,096 + HMPREF1078_RS04925 0.10 +0.3 241,096 + HMPREF1078_RS04925 0.10 -2.7 241,121 + HMPREF1078_RS04925 0.15 -1.8 241,152 + HMPREF1078_RS04925 0.20 +0.9 241,153 - HMPREF1078_RS04925 0.20 -2.3 241,153 - HMPREF1078_RS04925 0.20 -0.6 241,173 - HMPREF1078_RS04925 0.24 -0.6 241,226 + HMPREF1078_RS04925 0.33 -0.6 241,226 + HMPREF1078_RS04925 0.33 +1.0 241,232 + HMPREF1078_RS04925 0.34 +1.3 241,246 + HMPREF1078_RS04925 0.37 +0.5 241,252 + HMPREF1078_RS04925 0.38 -1.4 241,254 + HMPREF1078_RS04925 0.38 -1.3 241,254 + HMPREF1078_RS04925 0.38 -1.3 241,254 + HMPREF1078_RS04925 0.38 -1.7 241,254 + HMPREF1078_RS04925 0.38 -0.8 241,254 + HMPREF1078_RS04925 0.38 -0.3 241,254 + HMPREF1078_RS04925 0.38 +1.0 241,254 + HMPREF1078_RS04925 0.38 +0.2 241,254 + HMPREF1078_RS04925 0.38 +0.6 241,254 + HMPREF1078_RS04925 0.38 -0.4 241,254 + HMPREF1078_RS04925 0.38 -0.2 241,255 - HMPREF1078_RS04925 0.38 -0.8 241,255 - HMPREF1078_RS04925 0.38 -0.3 241,255 - HMPREF1078_RS04925 0.38 -0.8 241,255 - HMPREF1078_RS04925 0.38 -0.6 241,255 - HMPREF1078_RS04925 0.38 +1.0 241,255 - HMPREF1078_RS04925 0.38 +0.3 241,255 - HMPREF1078_RS04925 0.38 -1.3 241,255 - HMPREF1078_RS04925 0.38 -1.5 241,258 + HMPREF1078_RS04925 0.39 -1.4 241,259 - HMPREF1078_RS04925 0.39 -1.2 241,276 + HMPREF1078_RS04925 0.42 -1.2 241,308 + HMPREF1078_RS04925 0.48 -1.7 241,413 + HMPREF1078_RS04925 0.66 +0.4 241,413 + HMPREF1078_RS04925 0.66 -2.3 241,413 + HMPREF1078_RS04925 0.66 +0.1 241,413 + HMPREF1078_RS04925 0.66 +1.3 241,422 - HMPREF1078_RS04925 0.68 -0.3 241,444 + HMPREF1078_RS04925 0.72 +1.1 241,447 - HMPREF1078_RS04925 0.72 -0.9 241,470 + HMPREF1078_RS04925 0.76 -0.3 241,471 - HMPREF1078_RS04925 0.77 +3.5 241,471 - HMPREF1078_RS04925 0.77 +0.9 241,503 - HMPREF1078_RS04925 0.82 +1.1 241,520 + HMPREF1078_RS04925 0.85 +1.9 241,566 + -0.0 241,566 + -0.7 241,582 + -0.6 241,583 - +0.5 241,583 - +0.2 241,586 + +0.0 241,587 - +0.5 241,594 - +0.2 241,605 + -0.1 241,606 - -0.3 241,607 + -0.7 241,608 - +0.5 241,614 + -0.6 241,614 + -0.1 241,615 - -0.6 241,615 - -0.2 241,615 - -0.6 241,621 + +0.5 241,622 - -1.4 241,628 + -0.9 241,631 - -1.4 241,643 + -0.2 241,643 + +0.7 241,644 - -2.4 241,644 - -0.3 241,651 - -1.2 241,657 + -1.3 241,657 + +0.3 241,658 - -0.6 241,688 - +1.2 241,688 - +0.7 241,695 + +0.3 241,737 + -0.2 241,747 + -0.3 241,748 - +0.5 241,748 - +0.3 241,774 - HMPREF1078_RS04930 0.13 +0.9 241,852 + HMPREF1078_RS04930 0.24 -1.7 241,852 + HMPREF1078_RS04930 0.24 +0.4 241,855 + HMPREF1078_RS04930 0.25 -2.6 241,900 + HMPREF1078_RS04930 0.31 -0.3 241,930 + HMPREF1078_RS04930 0.36 -0.1 241,931 - HMPREF1078_RS04930 0.36 -2.9 241,931 - HMPREF1078_RS04930 0.36 -0.8 241,931 - HMPREF1078_RS04930 0.36 -1.5 242,212 + HMPREF1078_RS04930 0.77 -1.0 242,299 - HMPREF1078_RS04930 0.90 -0.3 242,299 - HMPREF1078_RS04930 0.90 -1.4 242,307 + +0.9 242,314 + -0.6 242,315 - -0.7 242,315 - +0.5 242,315 - +0.5 242,337 - -0.3 242,337 - -0.8 242,337 - +0.8 242,337 - +0.3 242,345 + -0.6 242,346 - +0.4 242,371 + -0.1 242,377 + -1.6 242,385 - -0.3 242,393 + +0.5 242,393 + -1.4 242,400 - +0.4 242,459 - +0.8 242,497 + -1.5 242,497 + -0.5 242,522 + -0.6 242,570 + HMPREF1078_RS04935 0.15 -0.4 242,578 + HMPREF1078_RS04935 0.17 -0.1 242,625 + HMPREF1078_RS04935 0.32 -1.0 242,625 + HMPREF1078_RS04935 0.32 -0.0 242,632 + HMPREF1078_RS04935 0.34 -1.3 242,632 + HMPREF1078_RS04935 0.34 +0.5 242,632 + HMPREF1078_RS04935 0.34 -0.1 242,638 + HMPREF1078_RS04935 0.36 +0.2 242,731 + HMPREF1078_RS04935 0.65 -0.9
Or see this region's nucleotide sequence