Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04710

Experiment: marine_broth_2216 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04705 and HMPREF1078_RS04710 overlap by 4 nucleotidesHMPREF1078_RS04710 and HMPREF1078_RS04715 overlap by 4 nucleotides HMPREF1078_RS04705: HMPREF1078_RS04705 - site-specific tyrosine recombinase XerD, at 185,075 to 185,980 _RS04705 HMPREF1078_RS04710: HMPREF1078_RS04710 - DUF4954 family protein, at 185,977 to 187,971 _RS04710 HMPREF1078_RS04715: HMPREF1078_RS04715 - GTPase HflX, at 187,968 to 189,179 _RS04715 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 184.990 kb on + strandat 184.991 kb on - strandat 185.051 kb on - strandat 185.057 kb on + strandat 185.097 kb on + strandat 185.106 kb on - strandat 185.106 kb on - strandat 185.114 kb on + strandat 185.149 kb on + strandat 185.228 kb on + strand, within HMPREF1078_RS04705at 185.228 kb on + strand, within HMPREF1078_RS04705at 185.229 kb on - strand, within HMPREF1078_RS04705at 185.229 kb on - strand, within HMPREF1078_RS04705at 185.345 kb on + strand, within HMPREF1078_RS04705at 185.345 kb on + strand, within HMPREF1078_RS04705at 185.347 kb on + strand, within HMPREF1078_RS04705at 185.348 kb on - strand, within HMPREF1078_RS04705at 185.348 kb on - strand, within HMPREF1078_RS04705at 185.348 kb on - strand, within HMPREF1078_RS04705at 185.348 kb on - strand, within HMPREF1078_RS04705at 185.349 kb on + strand, within HMPREF1078_RS04705at 185.350 kb on - strand, within HMPREF1078_RS04705at 185.373 kb on + strand, within HMPREF1078_RS04705at 185.429 kb on - strand, within HMPREF1078_RS04705at 185.501 kb on + strand, within HMPREF1078_RS04705at 185.501 kb on + strand, within HMPREF1078_RS04705at 185.556 kb on - strand, within HMPREF1078_RS04705at 185.654 kb on + strand, within HMPREF1078_RS04705at 185.749 kb on + strand, within HMPREF1078_RS04705at 185.749 kb on + strand, within HMPREF1078_RS04705at 185.804 kb on - strand, within HMPREF1078_RS04705at 185.861 kb on - strand, within HMPREF1078_RS04705at 185.906 kb on + strandat 185.944 kb on - strandat 185.944 kb on - strandat 185.962 kb on + strandat 185.979 kb on - strandat 186.036 kb on + strandat 186.036 kb on + strandat 186.036 kb on + strandat 186.036 kb on + strandat 186.036 kb on + strandat 186.151 kb on - strandat 186.177 kb on + strand, within HMPREF1078_RS04710at 186.178 kb on - strand, within HMPREF1078_RS04710at 186.179 kb on + strand, within HMPREF1078_RS04710at 186.180 kb on - strand, within HMPREF1078_RS04710at 186.272 kb on + strand, within HMPREF1078_RS04710at 186.273 kb on - strand, within HMPREF1078_RS04710at 186.273 kb on - strand, within HMPREF1078_RS04710at 186.276 kb on - strand, within HMPREF1078_RS04710at 186.276 kb on - strand, within HMPREF1078_RS04710at 186.289 kb on - strand, within HMPREF1078_RS04710at 186.294 kb on - strand, within HMPREF1078_RS04710at 186.294 kb on - strand, within HMPREF1078_RS04710at 186.317 kb on + strand, within HMPREF1078_RS04710at 186.572 kb on + strand, within HMPREF1078_RS04710at 186.626 kb on + strand, within HMPREF1078_RS04710at 186.627 kb on - strand, within HMPREF1078_RS04710at 186.698 kb on + strand, within HMPREF1078_RS04710at 186.706 kb on - strand, within HMPREF1078_RS04710at 186.707 kb on + strand, within HMPREF1078_RS04710at 186.798 kb on + strand, within HMPREF1078_RS04710at 186.817 kb on + strand, within HMPREF1078_RS04710at 186.833 kb on + strand, within HMPREF1078_RS04710at 186.833 kb on + strand, within HMPREF1078_RS04710at 186.834 kb on - strand, within HMPREF1078_RS04710at 186.834 kb on - strand, within HMPREF1078_RS04710at 186.834 kb on - strand, within HMPREF1078_RS04710at 186.862 kb on - strand, within HMPREF1078_RS04710at 186.888 kb on + strand, within HMPREF1078_RS04710at 186.950 kb on + strand, within HMPREF1078_RS04710at 186.950 kb on + strand, within HMPREF1078_RS04710at 186.951 kb on - strand, within HMPREF1078_RS04710at 186.987 kb on + strand, within HMPREF1078_RS04710at 187.014 kb on - strand, within HMPREF1078_RS04710at 187.014 kb on - strand, within HMPREF1078_RS04710at 187.014 kb on - strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.017 kb on + strand, within HMPREF1078_RS04710at 187.018 kb on - strand, within HMPREF1078_RS04710at 187.018 kb on - strand, within HMPREF1078_RS04710at 187.024 kb on - strand, within HMPREF1078_RS04710at 187.061 kb on + strand, within HMPREF1078_RS04710at 187.090 kb on - strand, within HMPREF1078_RS04710at 187.123 kb on - strand, within HMPREF1078_RS04710at 187.228 kb on - strand, within HMPREF1078_RS04710at 187.285 kb on - strand, within HMPREF1078_RS04710at 187.301 kb on + strand, within HMPREF1078_RS04710at 187.403 kb on - strand, within HMPREF1078_RS04710at 187.404 kb on + strand, within HMPREF1078_RS04710at 187.440 kb on - strand, within HMPREF1078_RS04710at 187.514 kb on + strand, within HMPREF1078_RS04710at 187.515 kb on - strand, within HMPREF1078_RS04710at 187.516 kb on + strand, within HMPREF1078_RS04710at 187.517 kb on - strand, within HMPREF1078_RS04710at 187.530 kb on - strand, within HMPREF1078_RS04710at 187.556 kb on + strand, within HMPREF1078_RS04710at 187.565 kb on - strand, within HMPREF1078_RS04710at 187.637 kb on + strand, within HMPREF1078_RS04710at 187.637 kb on + strand, within HMPREF1078_RS04710at 187.637 kb on + strand, within HMPREF1078_RS04710at 187.637 kb on + strand, within HMPREF1078_RS04710at 187.638 kb on - strand, within HMPREF1078_RS04710at 187.638 kb on - strand, within HMPREF1078_RS04710at 187.638 kb on - strand, within HMPREF1078_RS04710at 187.638 kb on - strand, within HMPREF1078_RS04710at 187.657 kb on + strand, within HMPREF1078_RS04710at 187.675 kb on + strand, within HMPREF1078_RS04710at 187.676 kb on - strand, within HMPREF1078_RS04710at 187.695 kb on - strand, within HMPREF1078_RS04710at 187.695 kb on - strand, within HMPREF1078_RS04710at 187.720 kb on - strand, within HMPREF1078_RS04710at 187.740 kb on + strand, within HMPREF1078_RS04710at 187.845 kb on + strandat 187.955 kb on - strandat 187.955 kb on - strandat 187.982 kb on - strandat 188.021 kb on + strandat 188.022 kb on - strandat 188.100 kb on - strand, within HMPREF1078_RS04715at 188.231 kb on + strand, within HMPREF1078_RS04715at 188.366 kb on - strand, within HMPREF1078_RS04715at 188.514 kb on - strand, within HMPREF1078_RS04715at 188.516 kb on + strand, within HMPREF1078_RS04715at 188.553 kb on - strand, within HMPREF1078_RS04715at 188.649 kb on + strand, within HMPREF1078_RS04715at 188.666 kb on + strand, within HMPREF1078_RS04715at 188.666 kb on + strand, within HMPREF1078_RS04715at 188.667 kb on - strand, within HMPREF1078_RS04715at 188.667 kb on - strand, within HMPREF1078_RS04715at 188.673 kb on - strand, within HMPREF1078_RS04715at 188.770 kb on + strand, within HMPREF1078_RS04715at 188.771 kb on - strand, within HMPREF1078_RS04715at 188.771 kb on - strand, within HMPREF1078_RS04715at 188.775 kb on - strand, within HMPREF1078_RS04715at 188.853 kb on - strand, within HMPREF1078_RS04715at 188.925 kb on + strand, within HMPREF1078_RS04715at 188.956 kb on + strand, within HMPREF1078_RS04715at 188.957 kb on - strand, within HMPREF1078_RS04715

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C)
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184,990 + +0.0
184,991 - -0.7
185,051 - +1.1
185,057 + +0.1
185,097 + -0.6
185,106 - +0.0
185,106 - -0.8
185,114 + -0.5
185,149 + -0.2
185,228 + HMPREF1078_RS04705 0.17 +0.6
185,228 + HMPREF1078_RS04705 0.17 +2.0
185,229 - HMPREF1078_RS04705 0.17 -1.6
185,229 - HMPREF1078_RS04705 0.17 -1.7
185,345 + HMPREF1078_RS04705 0.30 -0.5
185,345 + HMPREF1078_RS04705 0.30 +0.5
185,347 + HMPREF1078_RS04705 0.30 -2.1
185,348 - HMPREF1078_RS04705 0.30 -0.9
185,348 - HMPREF1078_RS04705 0.30 -0.5
185,348 - HMPREF1078_RS04705 0.30 -0.2
185,348 - HMPREF1078_RS04705 0.30 -0.6
185,349 + HMPREF1078_RS04705 0.30 +0.2
185,350 - HMPREF1078_RS04705 0.30 -0.3
185,373 + HMPREF1078_RS04705 0.33 +0.5
185,429 - HMPREF1078_RS04705 0.39 +1.9
185,501 + HMPREF1078_RS04705 0.47 +1.2
185,501 + HMPREF1078_RS04705 0.47 -0.7
185,556 - HMPREF1078_RS04705 0.53 -0.3
185,654 + HMPREF1078_RS04705 0.64 +0.9
185,749 + HMPREF1078_RS04705 0.74 -1.3
185,749 + HMPREF1078_RS04705 0.74 -0.8
185,804 - HMPREF1078_RS04705 0.80 -1.1
185,861 - HMPREF1078_RS04705 0.87 +0.7
185,906 + +2.3
185,944 - -0.3
185,944 - -1.7
185,962 + -0.1
185,979 - -2.0
186,036 + -0.5
186,036 + -1.6
186,036 + -2.0
186,036 + -0.0
186,036 + -0.9
186,151 - -0.5
186,177 + HMPREF1078_RS04710 0.10 -1.2
186,178 - HMPREF1078_RS04710 0.10 -2.3
186,179 + HMPREF1078_RS04710 0.10 +2.5
186,180 - HMPREF1078_RS04710 0.10 -1.3
186,272 + HMPREF1078_RS04710 0.15 -2.3
186,273 - HMPREF1078_RS04710 0.15 -0.9
186,273 - HMPREF1078_RS04710 0.15 -1.6
186,276 - HMPREF1078_RS04710 0.15 +1.8
186,276 - HMPREF1078_RS04710 0.15 -3.6
186,289 - HMPREF1078_RS04710 0.16 -1.2
186,294 - HMPREF1078_RS04710 0.16 -1.7
186,294 - HMPREF1078_RS04710 0.16 +0.2
186,317 + HMPREF1078_RS04710 0.17 -1.3
186,572 + HMPREF1078_RS04710 0.30 -3.3
186,626 + HMPREF1078_RS04710 0.33 -1.9
186,627 - HMPREF1078_RS04710 0.33 -1.8
186,698 + HMPREF1078_RS04710 0.36 -1.0
186,706 - HMPREF1078_RS04710 0.37 -1.3
186,707 + HMPREF1078_RS04710 0.37 -1.6
186,798 + HMPREF1078_RS04710 0.41 -1.2
186,817 + HMPREF1078_RS04710 0.42 -1.5
186,833 + HMPREF1078_RS04710 0.43 +0.6
186,833 + HMPREF1078_RS04710 0.43 -1.0
186,834 - HMPREF1078_RS04710 0.43 -0.7
186,834 - HMPREF1078_RS04710 0.43 -2.4
186,834 - HMPREF1078_RS04710 0.43 -1.8
186,862 - HMPREF1078_RS04710 0.44 -1.3
186,888 + HMPREF1078_RS04710 0.46 -1.7
186,950 + HMPREF1078_RS04710 0.49 -3.7
186,950 + HMPREF1078_RS04710 0.49 -1.0
186,951 - HMPREF1078_RS04710 0.49 -1.6
186,987 + HMPREF1078_RS04710 0.51 -0.6
187,014 - HMPREF1078_RS04710 0.52 +0.2
187,014 - HMPREF1078_RS04710 0.52 -0.1
187,014 - HMPREF1078_RS04710 0.52 -1.6
187,017 + HMPREF1078_RS04710 0.52 -1.0
187,017 + HMPREF1078_RS04710 0.52 +0.2
187,017 + HMPREF1078_RS04710 0.52 -2.4
187,017 + HMPREF1078_RS04710 0.52 -1.0
187,017 + HMPREF1078_RS04710 0.52 -1.1
187,017 + HMPREF1078_RS04710 0.52 +0.4
187,018 - HMPREF1078_RS04710 0.52 -0.5
187,018 - HMPREF1078_RS04710 0.52 -1.5
187,024 - HMPREF1078_RS04710 0.52 -0.5
187,061 + HMPREF1078_RS04710 0.54 -1.7
187,090 - HMPREF1078_RS04710 0.56 +0.7
187,123 - HMPREF1078_RS04710 0.57 -1.3
187,228 - HMPREF1078_RS04710 0.63 -1.5
187,285 - HMPREF1078_RS04710 0.66 +0.9
187,301 + HMPREF1078_RS04710 0.66 -0.6
187,403 - HMPREF1078_RS04710 0.71 -3.6
187,404 + HMPREF1078_RS04710 0.72 -0.6
187,440 - HMPREF1078_RS04710 0.73 -1.4
187,514 + HMPREF1078_RS04710 0.77 -0.9
187,515 - HMPREF1078_RS04710 0.77 -1.1
187,516 + HMPREF1078_RS04710 0.77 -3.2
187,517 - HMPREF1078_RS04710 0.77 -0.8
187,530 - HMPREF1078_RS04710 0.78 -1.0
187,556 + HMPREF1078_RS04710 0.79 -0.9
187,565 - HMPREF1078_RS04710 0.80 -0.9
187,637 + HMPREF1078_RS04710 0.83 +1.6
187,637 + HMPREF1078_RS04710 0.83 +0.2
187,637 + HMPREF1078_RS04710 0.83 -2.0
187,637 + HMPREF1078_RS04710 0.83 -1.1
187,638 - HMPREF1078_RS04710 0.83 -0.4
187,638 - HMPREF1078_RS04710 0.83 -1.1
187,638 - HMPREF1078_RS04710 0.83 -1.1
187,638 - HMPREF1078_RS04710 0.83 +2.5
187,657 + HMPREF1078_RS04710 0.84 +0.1
187,675 + HMPREF1078_RS04710 0.85 -1.5
187,676 - HMPREF1078_RS04710 0.85 -0.3
187,695 - HMPREF1078_RS04710 0.86 -2.2
187,695 - HMPREF1078_RS04710 0.86 -0.6
187,720 - HMPREF1078_RS04710 0.87 -0.8
187,740 + HMPREF1078_RS04710 0.88 +0.9
187,845 + -0.3
187,955 - -0.4
187,955 - -0.6
187,982 - +0.5
188,021 + -0.3
188,022 - +0.2
188,100 - HMPREF1078_RS04715 0.11 -1.0
188,231 + HMPREF1078_RS04715 0.22 -0.3
188,366 - HMPREF1078_RS04715 0.33 -1.2
188,514 - HMPREF1078_RS04715 0.45 -1.3
188,516 + HMPREF1078_RS04715 0.45 -1.2
188,553 - HMPREF1078_RS04715 0.48 +0.8
188,649 + HMPREF1078_RS04715 0.56 -1.2
188,666 + HMPREF1078_RS04715 0.58 +1.2
188,666 + HMPREF1078_RS04715 0.58 -0.8
188,667 - HMPREF1078_RS04715 0.58 -0.7
188,667 - HMPREF1078_RS04715 0.58 -1.5
188,673 - HMPREF1078_RS04715 0.58 -1.5
188,770 + HMPREF1078_RS04715 0.66 -1.9
188,771 - HMPREF1078_RS04715 0.66 -2.1
188,771 - HMPREF1078_RS04715 0.66 +0.9
188,775 - HMPREF1078_RS04715 0.67 +0.5
188,853 - HMPREF1078_RS04715 0.73 -0.3
188,925 + HMPREF1078_RS04715 0.79 +1.2
188,956 + HMPREF1078_RS04715 0.82 -1.6
188,957 - HMPREF1078_RS04715 0.82 +0.7

Or see this region's nucleotide sequence