Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04370

Experiment: marine_broth_2216 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 1 x (C)
103,678	+		HMPREF1078_RS04360	0.15	-1.5
103,678	+		HMPREF1078_RS04360	0.15	+1.7
103,692	+		HMPREF1078_RS04360	0.17	+1.9
103,758	+		HMPREF1078_RS04360	0.29	-0.6
103,836	+		HMPREF1078_RS04360	0.43	+1.9
103,836	+		HMPREF1078_RS04360	0.43	-0.1
103,900	-		HMPREF1078_RS04360	0.54	-1.1
103,903	-		HMPREF1078_RS04360	0.55	-1.2
103,903	-		HMPREF1078_RS04360	0.55	+0.4
103,907	+		HMPREF1078_RS04360	0.56	+0.1
104,027	-		HMPREF1078_RS04360	0.77	+0.4
104,028	+		HMPREF1078_RS04360	0.77	+0.8
104,082	+		HMPREF1078_RS04360	0.87	-1.5
104,109	-				+0.1
104,133	-				+0.3
104,326	+		HMPREF1078_RS04365	0.47	-0.8
104,357	+		HMPREF1078_RS04365	0.56	-1.8
104,357	+		HMPREF1078_RS04365	0.56	-1.3
104,358	-		HMPREF1078_RS04365	0.56	-2.0
104,414	+		HMPREF1078_RS04365	0.72	-1.8
104,414	+		HMPREF1078_RS04365	0.72	-2.1
104,415	-		HMPREF1078_RS04365	0.72	+2.1
104,415	-		HMPREF1078_RS04365	0.72	-0.5
104,415	-		HMPREF1078_RS04365	0.72	-0.9
104,415	-		HMPREF1078_RS04365	0.72	+0.4
104,475	+		HMPREF1078_RS04365	0.89	-0.3
104,514	-				-0.0
104,514	-				-0.4
104,526	+				+0.2
104,526	+				-0.4
104,526	+				-3.3
104,630	+				-0.3
104,637	+				-0.4
106,025	+		HMPREF1078_RS04370	0.76	-2.4
106,061	+		HMPREF1078_RS04370	0.78	+0.1
106,082	+		HMPREF1078_RS04370	0.79	-1.6
106,463	+				-1.9
106,517	+				+0.1
106,517	+				-1.2
106,517	+				-0.4
106,550	+				+0.6
106,550	+				-1.7
106,550	+				-0.2
106,550	+				+0.0
106,551	-				+0.8
106,551	-				-1.0
106,551	-				-0.2
106,555	+				-0.2
106,556	-				-0.2
106,556	-				-0.3
106,576	+		HMPREF1078_RS04375	0.10	+0.2
106,576	+		HMPREF1078_RS04375	0.10	+0.2
106,577	-		HMPREF1078_RS04375	0.11	-0.9
106,577	-		HMPREF1078_RS04375	0.11	-1.8
106,577	-		HMPREF1078_RS04375	0.11	-0.3
106,594	+		HMPREF1078_RS04375	0.17	+0.7
106,596	-		HMPREF1078_RS04375	0.18	+0.3
106,596	-		HMPREF1078_RS04375	0.18	-0.1
106,598	+		HMPREF1078_RS04375	0.19	-0.2
106,598	+		HMPREF1078_RS04375	0.19	-1.0
106,599	-		HMPREF1078_RS04375	0.19	+1.2
106,664	+		HMPREF1078_RS04375	0.44	-0.0
106,682	+		HMPREF1078_RS04375	0.50	-1.0
106,682	+		HMPREF1078_RS04375	0.50	+0.2
106,682	+		HMPREF1078_RS04375	0.50	+0.7
106,682	+		HMPREF1078_RS04375	0.50	+0.1
106,682	+		HMPREF1078_RS04375	0.50	+0.9
106,682	+		HMPREF1078_RS04375	0.50	-0.3
106,683	-		HMPREF1078_RS04375	0.51	-0.5
106,683	-		HMPREF1078_RS04375	0.51	-0.5
106,683	-		HMPREF1078_RS04375	0.51	+0.1
106,683	-		HMPREF1078_RS04375	0.51	-2.4
106,686	+		HMPREF1078_RS04375	0.52	+0.3
106,730	-		HMPREF1078_RS04375	0.69	+0.0
106,737	+		HMPREF1078_RS04375	0.71	-0.3
106,737	+		HMPREF1078_RS04375	0.71	-0.2
106,737	+		HMPREF1078_RS04375	0.71	+1.1
106,795	+				-0.9
106,832	-				-0.7
106,832	-				-0.1
106,833	+				+0.0
106,833	+				-1.0
106,833	+				+0.5
106,833	+				+0.2
106,847	+				+0.3
106,848	-				-2.0
106,851	-				+0.9
106,870	-				-0.2
106,902	-				-0.6
106,908	-				+0.1
106,908	-				+0.0
106,991	-				+0.0
107,029	+				+0.4
107,029	+				+0.9
107,034	+				+0.7
107,034	+				+0.6
107,035	-				+0.1
107,035	-				-0.3
107,035	-				+0.4
107,041	+				-2.0
107,042	-				+0.0
107,047	-				+0.8
107,088	+				+0.8
107,088	+				-0.5
107,089	-				+0.2
107,092	-				-1.6
107,101	-				-1.1
107,101	-				+0.3
107,101	-				-2.5
107,122	+				+0.5
107,122	+				-1.6
107,122	+				+0.3
107,122	+				-0.1
107,122	+				+0.5
107,123	-				-1.4
107,123	-				-1.3
107,129	+				+0.3
107,129	+				-0.4
107,130	-				-0.5
107,130	-				+1.9
107,133	+				-0.0
107,133	+				-2.3
107,133	+				+0.1
107,134	-				-1.1
107,160	+		HMPREF1078_RS20090	0.15	-0.1
107,161	-		HMPREF1078_RS20090	0.15	-0.6
107,168	+		HMPREF1078_RS20090	0.17	+0.0
107,168	+		HMPREF1078_RS20090	0.17	-0.2
107,169	-		HMPREF1078_RS20090	0.17	-1.2
107,169	-		HMPREF1078_RS20090	0.17	-0.2
107,172	-		HMPREF1078_RS20090	0.18	-0.1
107,175	-		HMPREF1078_RS20090	0.19	-1.0
107,199	+		HMPREF1078_RS20090	0.25	-0.0
107,199	+		HMPREF1078_RS20090	0.25	+0.2
107,231	+		HMPREF1078_RS20090	0.33	-0.1
107,232	-		HMPREF1078_RS20090	0.34	-0.1
107,232	-		HMPREF1078_RS20090	0.34	+0.1
107,304	+		HMPREF1078_RS20090	0.52	-1.7
107,304	+		HMPREF1078_RS20090	0.52	-0.6
107,304	+		HMPREF1078_RS20090	0.52	+1.1
107,305	-		HMPREF1078_RS20090	0.52	-1.1
107,305	-		HMPREF1078_RS20090	0.52	+0.0
107,343	+		HMPREF1078_RS20090	0.62	-0.2
107,351	-		HMPREF1078_RS20090	0.64	-1.2
107,419	+		HMPREF1078_RS20090	0.81	-0.6