Experiment: marine_broth_2216 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04355 and HMPREF1078_RS04360 are separated by 150 nucleotides HMPREF1078_RS04360 and HMPREF1078_RS04365 are separated by 1 nucleotides HMPREF1078_RS04365 and HMPREF1078_RS04370 are separated by 152 nucleotides
HMPREF1078_RS04355: HMPREF1078_RS04355 - hypothetical protein, at 103,033 to 103,446
_RS04355
HMPREF1078_RS04360: HMPREF1078_RS04360 - sigma-70 family RNA polymerase sigma factor, at 103,597 to 104,154
_RS04360
HMPREF1078_RS04365: HMPREF1078_RS04365 - hypothetical protein, at 104,156 to 104,515
_RS04365
HMPREF1078_RS04370: HMPREF1078_RS04370 - 30S ribosomal protein S1, at 104,668 to 106,461
_RS04370
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.171 kb on - strand, within HMPREF1078_RS04355 at 103.174 kb on - strand, within HMPREF1078_RS04355 at 103.187 kb on - strand, within HMPREF1078_RS04355 at 103.205 kb on - strand, within HMPREF1078_RS04355 at 103.205 kb on - strand, within HMPREF1078_RS04355 at 103.211 kb on - strand, within HMPREF1078_RS04355 at 103.211 kb on - strand, within HMPREF1078_RS04355 at 103.217 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.363 kb on - strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.392 kb on - strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.396 kb on - strand, within HMPREF1078_RS04355 at 103.400 kb on - strand, within HMPREF1078_RS04355 at 103.446 kb on + strand at 103.446 kb on + strand at 103.447 kb on - strand at 103.452 kb on + strand at 103.452 kb on + strand at 103.452 kb on + strand at 103.460 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.533 kb on + strand at 103.561 kb on + strand at 103.567 kb on - strand at 103.588 kb on + strand at 103.589 kb on - strand at 103.590 kb on + strand at 103.590 kb on + strand at 103.590 kb on + strand at 103.593 kb on + strand at 103.606 kb on + strand at 103.622 kb on - strand at 103.622 kb on - strand at 103.622 kb on - strand at 103.623 kb on + strand at 103.624 kb on - strand at 103.625 kb on + strand at 103.625 kb on + strand at 103.626 kb on - strand at 103.635 kb on - strand at 103.635 kb on - strand at 103.648 kb on - strand at 103.678 kb on + strand, within HMPREF1078_RS04360 at 103.678 kb on + strand, within HMPREF1078_RS04360 at 103.692 kb on + strand, within HMPREF1078_RS04360 at 103.758 kb on + strand, within HMPREF1078_RS04360 at 103.836 kb on + strand, within HMPREF1078_RS04360 at 103.836 kb on + strand, within HMPREF1078_RS04360 at 103.900 kb on - strand, within HMPREF1078_RS04360 at 103.903 kb on - strand, within HMPREF1078_RS04360 at 103.903 kb on - strand, within HMPREF1078_RS04360 at 103.907 kb on + strand, within HMPREF1078_RS04360 at 104.027 kb on - strand, within HMPREF1078_RS04360 at 104.028 kb on + strand, within HMPREF1078_RS04360 at 104.082 kb on + strand, within HMPREF1078_RS04360 at 104.109 kb on - strand at 104.133 kb on - strand at 104.326 kb on + strand, within HMPREF1078_RS04365 at 104.357 kb on + strand, within HMPREF1078_RS04365 at 104.357 kb on + strand, within HMPREF1078_RS04365 at 104.358 kb on - strand, within HMPREF1078_RS04365 at 104.414 kb on + strand, within HMPREF1078_RS04365 at 104.414 kb on + strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.475 kb on + strand, within HMPREF1078_RS04365 at 104.514 kb on - strand at 104.514 kb on - strand at 104.526 kb on + strand at 104.526 kb on + strand at 104.526 kb on + strand at 104.630 kb on + strand at 104.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) remove 103,171 - HMPREF1078_RS04355 0.33 -1.9 103,174 - HMPREF1078_RS04355 0.34 -2.4 103,187 - HMPREF1078_RS04355 0.37 -2.6 103,205 - HMPREF1078_RS04355 0.42 -0.4 103,205 - HMPREF1078_RS04355 0.42 -1.9 103,211 - HMPREF1078_RS04355 0.43 +0.5 103,211 - HMPREF1078_RS04355 0.43 -0.1 103,217 - HMPREF1078_RS04355 0.44 -1.1 103,279 - HMPREF1078_RS04355 0.59 +0.1 103,279 - HMPREF1078_RS04355 0.59 -1.1 103,279 - HMPREF1078_RS04355 0.59 +0.4 103,279 - HMPREF1078_RS04355 0.59 +0.9 103,363 - HMPREF1078_RS04355 0.80 -0.1 103,391 + HMPREF1078_RS04355 0.86 -0.6 103,391 + HMPREF1078_RS04355 0.86 -0.9 103,391 + HMPREF1078_RS04355 0.86 -0.6 103,391 + HMPREF1078_RS04355 0.86 -0.6 103,392 - HMPREF1078_RS04355 0.87 -1.0 103,395 + HMPREF1078_RS04355 0.87 +1.5 103,395 + HMPREF1078_RS04355 0.87 +0.7 103,395 + HMPREF1078_RS04355 0.87 +2.5 103,396 - HMPREF1078_RS04355 0.88 -1.7 103,400 - HMPREF1078_RS04355 0.89 +0.6 103,446 + +1.5 103,446 + -0.5 103,447 - -0.2 103,452 + +0.5 103,452 + -0.3 103,452 + -0.5 103,460 + -0.8 103,484 + +0.2 103,484 + +0.7 103,484 + -1.1 103,484 + -0.1 103,533 + -0.3 103,561 + -0.1 103,567 - -0.3 103,588 + -0.2 103,589 - +0.5 103,590 + +0.0 103,590 + -0.5 103,590 + +0.0 103,593 + -2.0 103,606 + -0.6 103,622 - +0.5 103,622 - -0.5 103,622 - +1.5 103,623 + +0.3 103,624 - -2.8 103,625 + +0.7 103,625 + +0.5 103,626 - -0.6 103,635 - +1.5 103,635 - -1.1 103,648 - +0.2 103,678 + HMPREF1078_RS04360 0.15 -1.5 103,678 + HMPREF1078_RS04360 0.15 +1.7 103,692 + HMPREF1078_RS04360 0.17 +1.9 103,758 + HMPREF1078_RS04360 0.29 -0.6 103,836 + HMPREF1078_RS04360 0.43 +1.9 103,836 + HMPREF1078_RS04360 0.43 -0.1 103,900 - HMPREF1078_RS04360 0.54 -1.1 103,903 - HMPREF1078_RS04360 0.55 -1.2 103,903 - HMPREF1078_RS04360 0.55 +0.4 103,907 + HMPREF1078_RS04360 0.56 +0.1 104,027 - HMPREF1078_RS04360 0.77 +0.4 104,028 + HMPREF1078_RS04360 0.77 +0.8 104,082 + HMPREF1078_RS04360 0.87 -1.5 104,109 - +0.1 104,133 - +0.3 104,326 + HMPREF1078_RS04365 0.47 -0.8 104,357 + HMPREF1078_RS04365 0.56 -1.8 104,357 + HMPREF1078_RS04365 0.56 -1.3 104,358 - HMPREF1078_RS04365 0.56 -2.0 104,414 + HMPREF1078_RS04365 0.72 -1.8 104,414 + HMPREF1078_RS04365 0.72 -2.1 104,415 - HMPREF1078_RS04365 0.72 +2.1 104,415 - HMPREF1078_RS04365 0.72 -0.5 104,415 - HMPREF1078_RS04365 0.72 -0.9 104,415 - HMPREF1078_RS04365 0.72 +0.4 104,475 + HMPREF1078_RS04365 0.89 -0.3 104,514 - -0.0 104,514 - -0.4 104,526 + +0.2 104,526 + -0.4 104,526 + -3.3 104,630 + -0.3 104,637 + -0.4
Or see this region's nucleotide sequence